Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011353

Physical Location & Seq

Genomic Coordinates Forward (+)

26500960 .. 26502963

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATAGCAAAGTGGAGGTAGACGAAGCGCCACAGCCGGAGCTCCAATCCACCGCCGCACAGCCATCACCGCCTTCGGAAATAGCTCAAATGGTTTGTGGCTCATGCCGCCGCCTGCTTAAGTATCCACGAGGAGCCAGACATGTCGAATGCTCGTGCTGTCAGACAGTCAACTTTGTTTTAGAAGCTCATCAGGTTGGACAAGTTAAATGTGGTAGTTGTGCAGTGTTGCTGATGTACCCATATGGAGCGGCGTCCGTCAGGTGTTCCTCTTGCAATTTTGTGACAGAAGTTGGAGAACACAACAAGCGCCCGCCATGGTCCGTCCAACAGGGGCAATCACCAGCTCCTCCTAATCCTGCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0031347 GO:0031349 GO:0040008 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

123

Amino Acids

13.18

Weight (kDa)

6.87

Isoelectric Point (pI)

73.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	33 - 57	1.2e-11	LSD1 zinc finger
zf-LSD1	PF06943	71 - 95	1.6e-12	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21610 AT4G21610
fragaria_vesca	FvH4_3g09310 FvH4_3g09310
malus_domestica	MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica	Prupe.4G046600_v2.0.a1
pyrus_communis	pycom05g29120 pycom10g24730
rosa_chinensis	RchiOBHm_Chr5g0008291
rosa_laevigata	RLG00000031559
rosa_multiflora	Rmu_co8513525.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068170
rosa_rugosa	Rorug04G0434800 Rorug04G0434800
rosa_samantha	Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana	Rw5G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	7 cut(s)	54, 57, 71, 109, 112, 251, 314
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	142
AluBI	AGCT	4 cut(s)	43, 86, 188, 347
AluI	AGCT	4 cut(s)	43, 86, 188, 347
Alw21I	GWGCWC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	31, 312
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	60, 333
AvaII	GGWCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	2 cut(s)	129, 154
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	135
BfoI	RGCGCY	2 cut(s)	32, 313
BfrI	CTTAAG	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	4 cut(s)	57, 109, 112, 252
BlsI	GCNGC	4 cut(s)	58, 110, 113, 253
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	147, 339
BsgI	GTGCAG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	7 cut(s)	54, 57, 71, 109, 112, 251, 314
BspLI	GGNNCC	1 cut(s)	136
BspTI	CTTAAG	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	254
BssSI	CACGAG	2 cut(s)	129, 154
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	2 cut(s)	129, 154
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	116, 314
BstDSI	CCRYGG	1 cut(s)	317
BstH2I	RGCGCY	2 cut(s)	32, 313
BstHHI	GCGC	2 cut(s)	31, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 108
BstNSI	RCATGY	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	116, 314
CfoI	GCGC	2 cut(s)	31, 312
Cfr13I	GGNCC	1 cut(s)	321
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	105, 143, 318
CviJI	RGCY	8 cut(s)	37, 43, 64, 86, 102, 137, 188, 347
CviKI_1	RGCY	8 cut(s)	37, 43, 64, 86, 102, 137, 188, 347
CviQI	GTAC	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	108, 146, 321
FaiI	YATR	5 cut(s)	106, 144, 244, 246, 319
FatI	CATG	3 cut(s)	104, 142, 317
FauI	CCCGC	1 cut(s)	321
FauNDI	CATATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	57, 109, 112, 252
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	57, 109, 112, 252
GlaI	GCGC	2 cut(s)	30, 311
GluI	GCNGC	4 cut(s)	57, 109, 112, 252
HaeII	RGCGCY	2 cut(s)	32, 313
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	2 cut(s)	31, 312
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	108, 146, 321
Hin6I	GCGC	2 cut(s)	29, 310
HinP1I	GCGC	2 cut(s)	29, 310
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	60, 333
Hpy166II	GTNNAC	2 cut(s)	22, 172
Hpy188I	TCNGA	2 cut(s)	79, 165
Hpy8I	GTNNAC	2 cut(s)	22, 172
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	2 cut(s)	224, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 108
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	108, 146, 321
HspAI	GCGC	2 cut(s)	29, 310
LmnI	GCTCC	5 cut(s)	40, 48, 134, 248, 352
LpnPI	CCDG	7 cut(s)	51, 128, 151, 179, 247, 317, 357
MaeIII	GTNAC	1 cut(s)	283
MbiI	CCGCTC	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	3 cut(s)	178, 274, 352
MnlI	CCTC	4 cut(s)	10, 125, 280, 360
MseI	TTAA	2 cut(s)	120, 207
MspCI	CTTAAG	1 cut(s)	119
MspI	CCGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	70, 108
NcoI	CCATGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	244
NlaIII	CATG	3 cut(s)	108, 146, 321
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	58, 110, 113, 253
PscI	ACATGT	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	321
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	120, 207
SatI	GCNGC	4 cut(s)	57, 109, 112, 252
Sau96I	GGNCC	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	21, 45, 88, 190, 198, 266, 349
SinI	GGWCC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	7 cut(s)	54, 57, 71, 109, 112, 251, 314
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	277
TauI	GCSGC	4 cut(s)	59, 111, 114, 254
Tru1I	TTAA	2 cut(s)	120, 207
Tru9I	TTAA	2 cut(s)	120, 207
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	247, 313
TspRI	CASTG	1 cut(s)	231
Vha464I	CTTAAG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.