Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011353

Physical Location & Seq

Genomic Coordinates Forward (+)

44386721 .. 44389428

Gene Structure 2708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1313200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACAGCAAAGTGGAAGTAGACGAAGCGCCGCAGTCGGAGCTCCAATCCACCGCCGCGCAGCCATCACCGCCTTCCGAAATAGCTCAAATGGTCTGTGGTTCTTGCCGCCGGCTGCTGAAGTATCCTCGAGGAGCCAGACATGTCGAGTGCTCGTGCTGTCAGACCGTCAACTTCGTGCTCGAAGCTCATCAGGTTGGACAAGTTAAATGTGGTAGCTGTGCAGTGTTGCTGATGTACCTGTATGGAGCGCCTTCCGTTAGGTGTTCCTCGTGCCATTTTGTGACAGAAGTTGGGGAACACAACAAGCGCCCTCCATGGTCCGTCCAACAGGGGCAATCACCAACTCCTCCAAATCCTGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0031347 GO:0031349 GO:0040008 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

123

Amino Acids

13.3

Weight (kDa)

6.93

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	33 - 57	1.2e-11	LSD1 zinc finger
zf-LSD1	PF06943	71 - 95	1.2e-11	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21610 AT4G21610
fragaria_vesca	FvH4_3g09310 FvH4_3g09310
malus_domestica	MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica	Prupe.4G046600_v2.0.a1
pyrus_communis	pycom05g29120 pycom10g24730
rosa_chinensis	RchiOBHm_Chr5g0008291
rosa_laevigata	RLG00000031559
rosa_multiflora	Rmu_co8513525.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068170
rosa_rugosa	Rorug04G0434800 Rorug04G0434800
rosa_samantha	Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana	Rw5G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	59
AciI	CCGC	5 cut(s)	32, 54, 57, 71, 109
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	142
AluBI	AGCT	4 cut(s)	43, 86, 188, 219
AluI	AGCT	4 cut(s)	43, 86, 188, 219
Alw21I	GWGCWC	3 cut(s)	45, 155, 183
Ama87I	CYCGRG	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	61, 115
AspLEI	GCGC	4 cut(s)	31, 61, 253, 312
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	2 cut(s)	60, 333
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	2 cut(s)	154, 271
Bbv12I	GWGCWC	3 cut(s)	45, 155, 183
BbvI	GCAGC	2 cut(s)	73, 102
BccI	CCATC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	135
BfoI	RGCGCY	3 cut(s)	32, 254, 313
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	5 cut(s)	32, 57, 62, 109, 116
BlsI	GCNGC	5 cut(s)	33, 58, 63, 110, 117
Bme18I	GGWCC	1 cut(s)	321
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	317
Bse118I	RCCGGY	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	317
BseRI	GAGGAG	2 cut(s)	147, 339
BseXI	GCAGC	2 cut(s)	73, 102
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	59
BsiHKAI	GWGCWC	3 cut(s)	45, 155, 183
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	3 cut(s)	45, 155, 183
Bsp19I	CCATGG	1 cut(s)	317
BspACI	CCGC	5 cut(s)	32, 54, 57, 71, 109
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	317
BssSI	CACGAG	2 cut(s)	154, 271
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	2 cut(s)	154, 271
Bst4CI	ACNGT	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	3 cut(s)	32, 254, 313
BstHHI	GCGC	4 cut(s)	31, 61, 253, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 70
BstNSI	RCATGY	1 cut(s)	146
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	73, 102
BsuI	GTATCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	4 cut(s)	31, 61, 253, 312
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	143, 318
CviJI	RGCY	7 cut(s)	43, 64, 86, 115, 137, 188, 219
CviKI_1	RGCY	7 cut(s)	43, 64, 86, 115, 137, 188, 219
CviQI	GTAC	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	146, 321
FaiI	YATR	3 cut(s)	144, 246, 319
FatI	CATG	2 cut(s)	142, 317
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	32, 57, 62, 109, 116
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	5 cut(s)	32, 57, 62, 109, 116
GlaI	GCGC	4 cut(s)	30, 60, 252, 311
GluI	GCNGC	5 cut(s)	32, 57, 62, 109, 116
HaeII	RGCGCY	3 cut(s)	32, 254, 313
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	4 cut(s)	31, 61, 253, 312
Hin1II	CATG	2 cut(s)	146, 321
Hin6I	GCGC	4 cut(s)	29, 59, 251, 310
HinP1I	GCGC	4 cut(s)	29, 59, 251, 310
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	60, 333
Hpy166II	GTNNAC	3 cut(s)	22, 172, 364
Hpy188I	TCNGA	3 cut(s)	40, 79, 165
Hpy8I	GTNNAC	3 cut(s)	22, 172, 364
HpyAV	CCTTC	2 cut(s)	84, 264
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 70
Hsp92II	CATG	2 cut(s)	146, 321
HspAI	GCGC	4 cut(s)	29, 59, 251, 310
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
LmnI	GCTCC	4 cut(s)	40, 48, 134, 248
LpnPI	CCDG	5 cut(s)	125, 151, 179, 254, 317
Lsp1109I	GCAGC	2 cut(s)	73, 102
MaeIII	GTNAC	1 cut(s)	283
MhlI	GDGCHC	3 cut(s)	45, 155, 183
MmeI	TCCRAC	3 cut(s)	18, 178, 352
MnlI	CCTC	5 cut(s)	125, 138, 280, 324, 360
MroNI	GCCGGC	1 cut(s)	111
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	40, 70
NaeI	GCCGGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	317
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	146, 321
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	129
PciI	ACATGT	1 cut(s)	142
PdiI	GCCGGC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	33, 58, 63, 110, 117
PscI	ACATGT	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	321
PspXI	VCTCGAGB	1 cut(s)	129
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	5 cut(s)	32, 57, 62, 109, 116
Sau96I	GGNCC	1 cut(s)	321
SduI	GDGCHC	3 cut(s)	45, 155, 183
SetI	ASST	7 cut(s)	45, 88, 190, 198, 221, 243, 266
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	321
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SsiI	CCGC	5 cut(s)	32, 54, 57, 71, 109
SstI	GAGCTC	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	130, 147, 183
TauI	GCSGC	3 cut(s)	34, 59, 111
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	61, 115
Tsp45I	GTSAC	1 cut(s)	283
TspGWI	ACGGA	2 cut(s)	247, 313
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.