Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011353

Physical Location & Seq

Genomic Coordinates Reverse (-)

2218621 .. 2220965

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G046600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGAGCACAGTGGAAGTAGACAAAGGGCCAGTCCCCGAGCACCAATCCATCGCTGCTGCCCAACCACCACCCTCCCCTTCCGAAATAGCTCAAATGGTTTGTGGTTCTTGCCGTCGCCTGCTTAAATATTCACGAGGAGCCAGACATGTTCAATGCTCATGCTGTCAGACAGTCAACTTTGTGCTAGAAGCTGATCAGGTTGGACAAGTTAAATGTGGTAGTTGTGCAGTGTTGCTGATGTATCAATATGGAGCTTCATCCGTCAGGTGTTCCTCTTGCCAGTTTGTGACAGAAATTGGAGAACACAACAAGCGTCCTCCATGGTCTGTTCAACAGGGGCAACCACCTCCCCCTGCCAATCCTGTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0031347 GO:0031349 GO:0040008 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045927 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

125

Amino Acids

13.41

Weight (kDa)

7.55

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21610 AT4G21610
fragaria_vesca	FvH4_3g09310 FvH4_3g09310
malus_domestica	MD05G1313200.v1.1 MD10G1295400.v1.1
prunus_persica	Prupe.4G046600_v2.0.a1
pyrus_communis	pycom05g29120 pycom10g24730
rosa_chinensis	RchiOBHm_Chr5g0008291
rosa_laevigata	RLG00000031559
rosa_multiflora	Rmu_co8513525.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068170
rosa_rugosa	Rorug04G0434800 Rorug04G0434800
rosa_samantha	Rh5AG063500 Rh5BG060000 Rh5CG070300 Rh5DG059500
rosa_wichuraiana	Rw5G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	2 cut(s)	155, 335
AluBI	AGCT	3 cut(s)	92, 194, 257
AluI	AGCT	3 cut(s)	92, 194, 257
Alw21I	GWGCWC	2 cut(s)	11, 45
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	56, 59
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AspS9I	GGNCC	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	38
BauI	CACGAG	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	11, 45
BbvI	GCAGC	2 cut(s)	43, 46
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	32, 283
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	32, 283
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	43, 46
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	11, 45
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	11, 45
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	323
BspANI	GGCC	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	32, 283
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	1 cut(s)	196
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	13, 175
BstC8I	GCNNGC	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	43, 46
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	18, 237
Cac8I	GCNNGC	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	305
CviAII	CATG	3 cut(s)	149, 162, 324
CviJI	RGCY	5 cut(s)	31, 92, 143, 194, 257
CviKI_1	RGCY	5 cut(s)	31, 92, 143, 194, 257
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	152, 165, 327
FaiI	YATR	4 cut(s)	150, 163, 252, 325
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	148, 161, 323
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	57, 60
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	57, 60
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	2 cut(s)	57, 60
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	152, 165, 327
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	22, 178
Hpy188I	TCNGA	2 cut(s)	85, 171
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	22, 178
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	2 cut(s)	13, 175
HpyCH4V	TGCA	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	152, 165, 327
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	140, 254
LpnPI	CCDG	8 cut(s)	45, 134, 157, 185, 253, 296, 323, 369
Lsp1109I	GCAGC	2 cut(s)	43, 46
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	11, 45
MluCI	AATT	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	5 cut(s)	85, 131, 286, 330, 360
MseI	TTAA	3 cut(s)	126, 213, 373
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	3 cut(s)	152, 165, 327
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	152
PciI	ACATGT	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	58, 61
PscI	ACATGT	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	1 cut(s)	29
SaqAI	TTAA	3 cut(s)	126, 213, 373
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	29
SduI	GDGCHC	2 cut(s)	11, 45
SetI	ASST	6 cut(s)	94, 196, 204, 259, 272, 352
Sse9I	AATT	1 cut(s)	297
SspI	AATATT	1 cut(s)	131
SspMI	CTAG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	13, 175
TasI	AATT	1 cut(s)	297
Tru1I	TTAA	3 cut(s)	126, 213, 373
Tru9I	TTAA	3 cut(s)	126, 213, 373
TscAI	CASTG	2 cut(s)	18, 237
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	56, 59
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	249, 359
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	2 cut(s)	18, 237
XceI	RCATGY	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.