AT4G23720

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013990
Physical Location & Seq
Forward (+)
12358662 .. 12359891
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23720.1

Sequence Viewer

Length: 942 bp
ATGAACTCAAAGTCTCTCACTTGCTGTGTTGTGTTCTTACTACATACCAGTTTGTTTTCTTCTACATTACAATCCTCTCTTATCCACTTGAACTCCACAACATCAATCCTTAATGTCACTTTACCACATTCCTTGTCTCAATCCTTAGAGAATTTCGCCCTCAAGACGTTAACCACTCAACATCATACCGGTGCACTATACCGAGCTATCTTACCGGAAAATCTCTCCGGCATCGAAGTCTCTGTCGTCCGTCTCACCGGGAAGAGTCTTTGGAACTCCGGGGCCAAGTTCAGCAACGTGCTTATTCCGGAAAGGTCAGTTTCGGTTCCTCCTGCTAGGAGAGTCGTTATAGTATACCAAAATCTAGGGAATTGGTCTAACCATTGGTATACCGTACCTGGTTACCGGTTAATCACTTCTGTCTTAGGGTTTAAGGTATTGGATGTGTCGGATCAAGACAATGTTAAAGAAATAATTCTAAAGATGAAGAATCCTGTAGAGGTTTCGTTTAGGGATCTACCTAAAGAGAGGGATGAGGAAATGCTGTCTAGGGTAAGATGCGTGAGTTTCAAGGCACAGACCAAAGATGAGGAAGCGACTCATATAAGCCGAATGGTTATCCCGGGTGTGTGTTATGGTTCGAGCCATGGGGATTATTCGGTGATCGAGCCTTTGGAGAACGATAAGAAGAATGTTGAGTCGTGGTCCACCTGGTGGTGGTTGTGGATCGTGGGATTTGTATTAGGATTCGGTTTATTAGGGTTTTTGTGTACAATGGGGATAAGGGTTTCAAGAGCGAAGAAGATTCAAGTGATGATGGAGAGAGACGCTAATGATGGTGAAGTGTTTGAGAGCAGATGGTTTGGTGGAAGTAAAATGCCATCTGCAGCTGTAACCAGAACTTTACCAGAGCTCGAATCCGGGTTCGAAAGGGTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

313

Amino Acids

35.19

Weight (kDa)

8.55

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 42 - 223 8e-55 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 714
AccI GTMKAC 2 cut(s) 354, 389
AccIII TCCGGA 1 cut(s) 307
AclWI GGATC 3 cut(s) 459, 522, 734
AcsI RAATTY 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 714
AfaI GTAC 2 cut(s) 396, 772
AfiI CCNNNNNNNGG 2 cut(s) 714, 717
AgeI ACCGGT 2 cut(s) 188, 405
AgsI TTSAA 4 cut(s) 91, 571, 792, 809
AjnI CCWGG 2 cut(s) 397, 710
AluBI AGCT 3 cut(s) 206, 890, 913
AluI AGCT 3 cut(s) 206, 890, 913
Alw21I GWGCWC 2 cut(s) 196, 915
Alw26I GTCTC 5 cut(s) 18, 141, 244, 257, 819
Alw44I GTGCAC 1 cut(s) 192
AlwI GGATC 3 cut(s) 459, 522, 734
Ama87I CYCGRG 1 cut(s) 622
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 282
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 887
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
AsiGI ACCGGT 2 cut(s) 188, 405
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 282, 705
AsuC2I CCSGG 5 cut(s) 259, 280, 623, 624, 922
AsuHPI GGTGA 3 cut(s) 247, 673, 851
AsuII TTCGAA 1 cut(s) 927
AvaI CYCGRG 1 cut(s) 622
AvaII GGWCC 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 915
Bbv12I GWGCWC 2 cut(s) 196, 915
BbvI GCAGC 1 cut(s) 899
BccI CCATC 4 cut(s) 811, 830, 852, 889
BciT130I CCWGG 2 cut(s) 399, 712
BcnI CCSGG 5 cut(s) 259, 280, 623, 624, 922
BcoDI GTCTC 5 cut(s) 18, 141, 244, 257, 819
BfaI CTAG 3 cut(s) 336, 365, 549
BfmI CTRYAG 2 cut(s) 495, 885
BisI GCNGC 1 cut(s) 888
BlsI GCNGC 1 cut(s) 889
Bme1390I CCNGG 7 cut(s) 259, 280, 399, 623, 624, 712, 922
Bme18I GGWCC 1 cut(s) 705
BmeT110I CYCGRG 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 282, 705
BmiI GGNNCC 2 cut(s) 283, 327
BmrFI CCNGG 7 cut(s) 259, 280, 399, 623, 624, 712, 922
BmsI GCATC 2 cut(s) 240, 548
Bpu14I TTCGAA 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 5 cut(s) 259, 280, 623, 624, 922
BsaJI CCNNGG 3 cut(s) 279, 622, 646
BsaWI WCCGGW 4 cut(s) 188, 214, 307, 405
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 714, 717
Bse118I RCCGGY 2 cut(s) 188, 405
Bse1I ACTGG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 2 cut(s) 399, 712
BseDI CCNNGG 3 cut(s) 279, 622, 646
BseGI GGATG 2 cut(s) 448, 538
BseLI CCNNNNNNNGG 2 cut(s) 714, 717
BseNI ACTGG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 899
BshFI GGCC 1 cut(s) 284
BshTI ACCGGT 2 cut(s) 188, 405
BsiHKAI GWGCWC 2 cut(s) 196, 915
BsiHKCI CYCGRG 1 cut(s) 622
BsiSI CCGG 9 cut(s) 189, 215, 228, 258, 279, 308, 406, 623, 921
BslI CCNNNNNNNGG 2 cut(s) 714, 717
BsmAI GTCTC 5 cut(s) 18, 141, 244, 257, 819
BsmBI CGTCTC 2 cut(s) 257, 819
BsnI GGCC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 927
Bsp1286I GDGCHC 2 cut(s) 196, 915
Bsp13I TCCGGA 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 770
Bsp143I GATC 4 cut(s) 451, 514, 663, 726
Bsp19I CCATGG 1 cut(s) 646
BspANI GGCC 1 cut(s) 284
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 283, 327
BspMAI CTGCAG 1 cut(s) 889
BspPI GGATC 3 cut(s) 459, 522, 734
BspT104I TTCGAA 1 cut(s) 927
BsrFI RCCGGY 2 cut(s) 188, 405
BsrGI TGTACA 1 cut(s) 770
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 2 cut(s) 188, 405
BssECI CCNNGG 3 cut(s) 279, 622, 646
BssMI GATC 4 cut(s) 451, 514, 663, 726
BssNAI GTATAC 2 cut(s) 355, 390
BssT1I CCWWGG 1 cut(s) 646
Bst1107I GTATAC 2 cut(s) 355, 390
Bst2UI CCWGG 2 cut(s) 399, 712
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 770
BstBI TTCGAA 1 cut(s) 927
BstDEI CTNAG 3 cut(s) 145, 424, 939
BstDSI CCRYGG 1 cut(s) 646
BstEII GGTNACC 1 cut(s) 401
BstF5I GGATG 2 cut(s) 448, 538
BstKTI GATC 4 cut(s) 454, 517, 666, 729
BstMAI GTCTC 5 cut(s) 18, 141, 244, 257, 819
BstMBI GATC 4 cut(s) 451, 514, 663, 726
BstNI CCWGG 2 cut(s) 399, 712
BstPI GGTNACC 1 cut(s) 401
BstSCI CCNGG 7 cut(s) 257, 278, 397, 621, 622, 710, 920
BstSFI CTRYAG 2 cut(s) 495, 885
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BstZ17I GTATAC 2 cut(s) 355, 390
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 646
BtsCI GGATG 2 cut(s) 448, 538
Cfr10I RCCGGY 2 cut(s) 188, 405
Cfr13I GGNCC 2 cut(s) 282, 705
Cfr9I CCCGGG 1 cut(s) 622
CseI GACGC 1 cut(s) 836
CsiI ACCWGGT 2 cut(s) 397, 710
Csp6I GTAC 2 cut(s) 395, 771
CspAI ACCGGT 2 cut(s) 188, 405
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 1 cut(s) 647
CviJI RGCY 7 cut(s) 206, 284, 609, 645, 670, 890, 913
CviKI_1 RGCY 7 cut(s) 206, 284, 609, 645, 670, 890, 913
CviQI GTAC 2 cut(s) 395, 771
DdeI CTNAG 3 cut(s) 145, 424, 939
DpnI GATC 4 cut(s) 453, 516, 665, 728
DpnII GATC 4 cut(s) 451, 514, 663, 726
DraIII CACNNNGTG 1 cut(s) 714
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 913
Eco130I CCWWGG 1 cut(s) 646
Eco24I GRGCYC 1 cut(s) 915
Eco47I GGWCC 1 cut(s) 705
Eco53kI GAGCTC 1 cut(s) 913
Eco88I CYCGRG 1 cut(s) 622
Eco91I GGTNACC 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 397, 710
EcoT14I CCWWGG 1 cut(s) 646
EcoT38I GRGCYC 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 646
Esp3I CGTCTC 2 cut(s) 257, 819
FaeI CATG 1 cut(s) 650
FalI AAGNNNNNCTT 1 cut(s) 922
FatI CATG 1 cut(s) 646
FblI GTMKAC 2 cut(s) 354, 389
Fnu4HI GCNGC 1 cut(s) 888
FokI GGATG 2 cut(s) 455, 545
FriOI GRGCYC 1 cut(s) 915
Fsp4HI GCNGC 1 cut(s) 888
FspBI CTAG 3 cut(s) 336, 365, 549
GluI GCNGC 1 cut(s) 888
HaeIII GGCC 1 cut(s) 284
HapII CCGG 9 cut(s) 189, 215, 228, 258, 279, 308, 406, 623, 921
HgaI GACGC 1 cut(s) 836
Hin1II CATG 1 cut(s) 650
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 8 cut(s) 265, 342, 490, 598, 698, 747, 805, 917
HpaI GTTAAC 1 cut(s) 171
HpaII CCGG 9 cut(s) 189, 215, 228, 258, 279, 308, 406, 623, 921
HphI GGTGA 3 cut(s) 247, 673, 851
Hpy166II GTNNAC 6 cut(s) 171, 194, 355, 390, 708, 771
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 4 cut(s) 163, 308, 455, 792
Hpy8I GTNNAC 6 cut(s) 171, 194, 355, 390, 708, 771
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 167, 297
HpyCH4V TGCA 2 cut(s) 194, 887
HpyF3I CTNAG 3 cut(s) 145, 424, 939
HpySE526I ACGT 2 cut(s) 167, 297
Hsp92II CATG 1 cut(s) 650
Kpn2I TCCGGA 1 cut(s) 307
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 451, 514, 663, 726
Lsp1109I GCAGC 1 cut(s) 899
LweI GCATC 2 cut(s) 240, 548
MabI ACCWGGT 2 cut(s) 397, 710
MaeI CTAG 3 cut(s) 336, 365, 549
MaeII ACGT 2 cut(s) 167, 297
MaeIII GTNAC 3 cut(s) 115, 401, 892
MalI GATC 4 cut(s) 453, 516, 665, 728
MboI GATC 4 cut(s) 451, 514, 663, 726
MboII GAAGA 6 cut(s) 51, 274, 499, 700, 811, 814
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 2 cut(s) 196, 915
MluCI AATT 3 cut(s) 151, 370, 474
MlyI GAGTC 4 cut(s) 274, 351, 592, 707
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 85, 170, 339, 493, 522, 529, 583
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 5 cut(s) 111, 170, 410, 432, 465
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 9 cut(s) 189, 215, 228, 258, 279, 308, 406, 623, 921
MspR9I CCNGG 7 cut(s) 259, 280, 399, 623, 624, 712, 922
MvaI CCWGG 2 cut(s) 399, 712
NciI CCSGG 5 cut(s) 259, 280, 623, 624, 922
NcoI CCATGG 1 cut(s) 646
NdeII GATC 4 cut(s) 451, 514, 663, 726
NlaIII CATG 1 cut(s) 650
NlaIV GGNNCC 2 cut(s) 283, 327
NmuCI GTSAC 1 cut(s) 115
NspV TTCGAA 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 490, 747, 805, 917
PflMI CCANNNNNTGG 1 cut(s) 714
PinAI ACCGGT 2 cut(s) 188, 405
PkrI GCNGC 1 cut(s) 889
PleI GAGTC 4 cut(s) 273, 350, 592, 706
PpsI GAGTC 4 cut(s) 273, 350, 592, 706
Psp124BI GAGCTC 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 397, 710
PspEI GGTNACC 1 cut(s) 401
PspGI CCWGG 2 cut(s) 397, 710
PspN4I GGNNCC 2 cut(s) 283, 327
PspPI GGNCC 2 cut(s) 282, 705
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 2 cut(s) 396, 772
RsaNI GTAC 2 cut(s) 395, 771
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 915
SaqAI TTAA 5 cut(s) 111, 170, 410, 432, 465
SatI GCNGC 1 cut(s) 888
Sau3AI GATC 4 cut(s) 451, 514, 663, 726
Sau96I GGNCC 2 cut(s) 282, 705
SchI GAGTC 4 cut(s) 274, 351, 592, 707
ScrFI CCNGG 7 cut(s) 259, 280, 399, 623, 624, 712, 922
SduI GDGCHC 2 cut(s) 196, 915
SexAI ACCWGGT 2 cut(s) 397, 710
SfaNI GCATC 2 cut(s) 240, 548
SfcI CTRYAG 2 cut(s) 495, 885
SfuI TTCGAA 1 cut(s) 927
SinI GGWCC 1 cut(s) 705
SmaI CCCGGG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 3 cut(s) 151, 370, 474
SspMI CTAG 3 cut(s) 336, 365, 549
SstI GAGCTC 1 cut(s) 915
StyD4I CCNGG 7 cut(s) 257, 278, 397, 621, 622, 710, 920
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 170, 300
TaqI TCGA 5 cut(s) 234, 641, 666, 915, 927
TasI AATT 3 cut(s) 151, 370, 474
TatI WGTACW 1 cut(s) 770
TfiI GAWTC 4 cut(s) 490, 747, 805, 917
Tru1I TTAA 5 cut(s) 111, 170, 410, 432, 465
Tru9I TTAA 5 cut(s) 111, 170, 410, 432, 465
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 887
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 500
TspGWI ACGGA 1 cut(s) 239
TspMI CCCGGG 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 714
VneI GTGCAC 1 cut(s) 192
VpaK11BI GGWCC 1 cut(s) 705
XapI RAATTY 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 622
XmiI GTMKAC 2 cut(s) 354, 389
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 3 cut(s) 336, 365, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.