MD06G1098600.v1.1

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013990
Physical Location & Seq
Forward (+)
23462546 .. 23462998
453 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1098600.v1.1.491

Sequence Viewer

Length: 453 bp
ATGAAAGTCTCCATGGTGAGGCTTTTAAGCCGCCGGTTGTGGAATAGAGGAGCTACTAACTTCAGCTGTTTCAAAATTCCATTAAGAACCATGCCAATGCCTCATGTGAAAAGACTGGCTTTTGTGCATCAAAATTTGGGCAATTGGTCATCTCATTACTACTCTCTTCCAGGTTACTCACTAGTCTCTTCTGTTATTGGTTTTACAGTTTATGATGCATCGAATACAAGTTCGAAGAGAACCGCAAAGCTCAGTCTCAACACTATGGGGAAACCTATATTGGTTCAGTTTCCGAATCTCACATTGGACAGAAGCACAAGCGTCGCGGAAAAATGTGCATCATTTTTTGCCAATGGGACGGTTTTCCTCAGTGAAATGAGATTACCTGGTGTGTGTCTTACCACAGAGCAAGGTCATTTGTCGTTGTTCCATCGAAGAGAAAAGAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

10.48

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 1 - 142 1.8e-49 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 326
AciI CCGC 3 cut(s) 31, 243, 326
AcsI RAATTY 2 cut(s) 75, 133
AcuI CTGAAG 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 2 cut(s) 169, 385
AjuI GAANNNNNNNTTGG 4 cut(s) 263, 287, 295, 319
AluBI AGCT 3 cut(s) 53, 66, 250
AluI AGCT 3 cut(s) 53, 66, 250
Alw26I GTCTC 3 cut(s) 13, 190, 260
AoxI GGCC 1 cut(s) 447
ApoI RAATTY 2 cut(s) 75, 133
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 233
BccI CCATC 1 cut(s) 438
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 2 cut(s) 171, 387
BcoDI GTCTC 3 cut(s) 13, 190, 260
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 2 cut(s) 171, 387
BmrFI CCNGG 2 cut(s) 171, 387
BmsI GCATC 4 cut(s) 136, 205, 227, 347
Bpu14I TTCGAA 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 2 cut(s) 171, 387
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 2 cut(s) 265, 382
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 13, 190, 260
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 3 cut(s) 31, 243, 326
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 264, 381
BspFNI CGCG 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 33
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 171, 387
Bst4CI ACNGT 2 cut(s) 208, 361
Bst6I CTCTTC 4 cut(s) 171, 193, 230, 430
BstBI TTCGAA 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 251, 368
BstDSI CCRYGG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 326
BstMAI GTCTC 3 cut(s) 13, 190, 260
BstNI CCWGG 2 cut(s) 171, 387
BstSCI CCNGG 2 cut(s) 169, 385
BstUI CGCG 1 cut(s) 326
BsuRI GGCC 1 cut(s) 449
BtgI CCRYGG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 376
Cfr10I RCCGGY 1 cut(s) 33
CseI GACGC 1 cut(s) 310
CsiI ACCWGGT 1 cut(s) 385
CviAII CATG 3 cut(s) 13, 91, 104
CviJI RGCY 7 cut(s) 22, 30, 53, 66, 119, 250, 449
CviKI_1 RGCY 7 cut(s) 22, 30, 53, 66, 119, 250, 449
DdeI CTNAG 2 cut(s) 251, 368
Eam1104I CTCTTC 4 cut(s) 171, 193, 230, 430
EarI CTCTTC 4 cut(s) 171, 193, 230, 430
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 169, 385
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 94, 107
FaiI YATR 6 cut(s) 14, 92, 105, 213, 266, 278
FalI AAGNNNNNCTT 2 cut(s) 103, 135
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 12, 90, 103
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 449
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 310
Hin1II CATG 3 cut(s) 16, 94, 107
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 2 cut(s) 208, 361
HpyCH4V TGCA 3 cut(s) 127, 218, 338
HpyF3I CTNAG 2 cut(s) 251, 368
Hsp92II CATG 3 cut(s) 16, 94, 107
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 47, 101, 156, 183, 372, 399
LweI GCATC 4 cut(s) 136, 205, 227, 347
MabI ACCWGGT 1 cut(s) 385
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 4 cut(s) 158, 180, 247, 447
MfeI CAATTG 1 cut(s) 142
MluCI AATT 3 cut(s) 75, 133, 142
MnlI CCTC 4 cut(s) 12, 41, 111, 377
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 26, 83
MslI CAYNNNNRTG 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 171, 387
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 2 cut(s) 171, 387
MvnI CGCG 1 cut(s) 326
NcoI CCATGG 1 cut(s) 12
NlaIII CATG 3 cut(s) 16, 94, 107
NsiI ATGCAT 1 cut(s) 220
NspV TTCGAA 1 cut(s) 233
PceI AGGCCT 1 cut(s) 449
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 169, 385
PspGI CCWGG 2 cut(s) 169, 385
PvuII CAGCTG 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 2 cut(s) 26, 83
SatI GCNGC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 171, 387
SetI ASST 7 cut(s) 55, 68, 175, 252, 277, 388, 415
SexAI ACCWGGT 1 cut(s) 385
SfaNI GCATC 4 cut(s) 136, 205, 227, 347
SfuI TTCGAA 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 3 cut(s) 75, 133, 142
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 3 cut(s) 31, 243, 326
SspMI CTAG 1 cut(s) 182
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 2 cut(s) 169, 385
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 208, 361
TaqI TCGA 3 cut(s) 221, 233, 433
TasI AATT 3 cut(s) 75, 133, 142
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 26, 83
Tru9I TTAA 2 cut(s) 26, 83
TscAI CASTG 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 376
XapI RAATTY 2 cut(s) 75, 133
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.