FvH4_5g03780

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013990
Physical Location & Seq
Forward (+)
2225828 .. 2226715
888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03780.t1

Sequence Viewer

Length: 888 bp
ATGAGCTGGTTTTTCATCTCGGTTTTCTGCATCTTTCTTTTCTGCTCGTGTAGCAACTCTAGCAGTACTGACTCTTTAGATGTGTTCACTAGAGATGTGGCCCTGAAGACTCTTGTGCAGCACCGGCCTCACACCGGTGCTGTGTACAAGGCAATCCTCCCGGCTAACCTATCCGGCGTGGAAGTCTTTGTTGTGGGGCTTCGAAGCAGGAGGTTGTGGAACAGAGGTGCTGAAAAGCTCAGCTGTTTTCATATCCCATCAAGAACCAAGCCAATGCCTCATGTGAAGAGACTGGCTTTGGTGTATCAAGACTTGGGGAATCTGTCATCTCAGTTCTACCATCATCCAGGTTACTCATTTCTCACCTCTGTTGTTGGTTTACTAGTTTACGATGCAACAGATACAAGTTCGACAAATGCAAGAAGGGTTGGTCTAAACACAATGGGGAAGCCGATATTGATTCAGTTCCCGAATCTGACATTGGAGGAACGTTTGATCTCTAAGGCAAAATGTGCATTGTTTGCTGCCAACGGGACAGTTTACCTCAGTGACATGAGATCTCCTGGGGTATGTAACACTAATGATGAAGGTCATTTTTCAATTGTTGTTCCAGTAAAGAAGAAACCGGAGATCCTGCGGTATTCATGGGTAGTTGCAATTGTCCTTGGTGTTCTTGTAGCTATTTTGGGGTGTTATCTTGGGATGGTATGTATGAGACATCGAAAGAGGAAGAAGTTTCAAGTAATGGAAGGACAGGCTGAAGACGATTCAGTTCTTGAAAATAGGTGGGTTTGTGGTAGCAAAATGCCCTCGGGTGGAGTTGTAAGAACTCAGCCAGTTCCTGAGAATGGTTTTCGACACCTAGCTTCACCTGATCACTTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

296

Amino Acids

32.89

Weight (kDa)

9.47

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 22 - 204 1.4e-62 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 637
AclI AACGTT 1 cut(s) 490
AclWI GGATC 1 cut(s) 625
AcuI CTGAAG 3 cut(s) 125, 780, 865
AfaI GTAC 2 cut(s) 67, 146
AfiI CCNNNNNNNGG 3 cut(s) 134, 815, 848
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 600, 740, 779
AhlI ACTAGT 1 cut(s) 382
AjnI CCWGG 2 cut(s) 346, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 6 cut(s) 6, 238, 243, 680, 866, 885
AluI AGCT 6 cut(s) 6, 238, 243, 680, 866, 885
Alw26I GTCTC 2 cut(s) 283, 709
AlwI GGATC 1 cut(s) 625
AlwNI CAGNNNCTG 1 cut(s) 842
Ama87I CYCGRG 1 cut(s) 811
AoxI GGCC 2 cut(s) 99, 125
ApeKI GCWGC 2 cut(s) 118, 524
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 355, 861
AsuII TTCGAA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 811
BauI CACGAG 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 113, 768
BbvI GCAGC 2 cut(s) 130, 511
BccI CCATC 3 cut(s) 265, 348, 697
BciT130I CCWGG 2 cut(s) 348, 564
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 283, 709
BcuI ACTAGT 1 cut(s) 382
BfaI CTAG 4 cut(s) 60, 90, 383, 863
BglII AGATCT 1 cut(s) 557
BisI GCNGC 2 cut(s) 119, 525
BlpI GCTNAGC 1 cut(s) 239
BlsI GCNGC 2 cut(s) 120, 526
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 3 cut(s) 161, 348, 564
BmeT110I CYCGRG 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 100
BmrFI CCNGG 3 cut(s) 161, 348, 564
BmsI GCATC 2 cut(s) 39, 382
BpiI GAAGAC 2 cut(s) 113, 768
Bpu1102I GCTNAGC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 3 cut(s) 563, 664, 810
BsaWI WCCGGW 2 cut(s) 134, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 815, 848
Bse118I RCCGGY 2 cut(s) 123, 134
Bse1I ACTGG 3 cut(s) 297, 611, 836
BseBI CCWGG 2 cut(s) 348, 564
BseDI CCNNGG 3 cut(s) 563, 664, 810
BseGI GGATG 2 cut(s) 343, 708
BseLI CCNNNNNNNGG 3 cut(s) 134, 815, 848
BseMII CTCAG 5 cut(s) 253, 344, 559, 834, 845
BseNI ACTGG 3 cut(s) 297, 611, 836
BseXI GCAGC 2 cut(s) 130, 511
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 2 cut(s) 101, 127
BshTI ACCGGT 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 811
BsiSI CCGG 5 cut(s) 124, 135, 161, 174, 626
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 3 cut(s) 134, 815, 848
BsmAI GTCTC 2 cut(s) 283, 709
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 2 cut(s) 101, 127
BsoBI CYCGRG 1 cut(s) 811
Bsp119I TTCGAA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 4 cut(s) 495, 557, 630, 874
Bsp1720I GCTNAGC 1 cut(s) 239
BspACI CCGC 1 cut(s) 637
BspANI GGCC 2 cut(s) 101, 127
BspCNI CTCAG 5 cut(s) 252, 343, 558, 835, 844
BspPI GGATC 1 cut(s) 625
BspT104I TTCGAA 1 cut(s) 202
BsrFI RCCGGY 2 cut(s) 123, 134
BsrGI TGTACA 1 cut(s) 144
BsrI ACTGG 3 cut(s) 297, 611, 836
BssAI RCCGGY 2 cut(s) 123, 134
BssECI CCNNGG 3 cut(s) 563, 664, 810
BssMI GATC 4 cut(s) 495, 557, 630, 874
BssSI CACGAG 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 348, 564
Bst4CI ACNGT 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 512, 521
BstAUI TGTACA 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 202
BstDEI CTNAG 6 cut(s) 239, 330, 501, 545, 831, 843
BstF5I GGATG 2 cut(s) 343, 708
BstKTI GATC 4 cut(s) 498, 560, 633, 877
BstMAI GTCTC 2 cut(s) 283, 709
BstMBI GATC 4 cut(s) 495, 557, 630, 874
BstMWI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
BstNI CCWGG 2 cut(s) 348, 564
BstSCI CCNGG 3 cut(s) 159, 346, 562
BstV1I GCAGC 2 cut(s) 130, 511
BstV2I GAAGAC 2 cut(s) 113, 768
BstX2I RGATCY 2 cut(s) 557, 630
BstYI RGATCY 2 cut(s) 557, 630
BsuRI GGCC 2 cut(s) 101, 127
BtsCI GGATG 2 cut(s) 343, 708
BtsIMutI CAGTG 1 cut(s) 553
CaiI CAGNNNCTG 1 cut(s) 842
Cfr10I RCCGGY 2 cut(s) 123, 134
Cfr13I GGNCC 1 cut(s) 100
Csp6I GTAC 2 cut(s) 66, 145
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 3 cut(s) 281, 553, 645
CviQI GTAC 2 cut(s) 66, 145
DdeI CTNAG 6 cut(s) 239, 330, 501, 545, 831, 843
DpnI GATC 4 cut(s) 497, 559, 632, 876
DpnII GATC 4 cut(s) 495, 557, 630, 874
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 664
Eco57I CTGAAG 3 cut(s) 125, 780, 865
Eco88I CYCGRG 1 cut(s) 811
EcoRII CCWGG 2 cut(s) 346, 562
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 3 cut(s) 284, 556, 648
FaiI YATR 7 cut(s) 252, 282, 554, 571, 646, 709, 713
FaqI GGGAC 1 cut(s) 547
FatI CATG 3 cut(s) 280, 552, 644
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 2 cut(s) 119, 525
FokI GGATG 2 cut(s) 330, 715
Fsp4HI GCNGC 2 cut(s) 119, 525
FspBI CTAG 4 cut(s) 60, 90, 383, 863
GluI GCNGC 2 cut(s) 119, 525
HaeIII GGCC 2 cut(s) 101, 127
HapII CCGG 5 cut(s) 124, 135, 161, 174, 626
Hin1II CATG 3 cut(s) 284, 556, 648
HinfI GANTC 6 cut(s) 71, 109, 319, 460, 472, 767
HpaII CCGG 5 cut(s) 124, 135, 161, 174, 626
HphI GGTGA 2 cut(s) 355, 861
Hpy166II GTNNAC 5 cut(s) 87, 145, 380, 388, 541
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 5 cut(s) 261, 308, 469, 776, 842
Hpy8I GTNNAC 5 cut(s) 87, 145, 380, 388, 541
HpyAV CCTTC 3 cut(s) 417, 581, 743
HpyCH4III ACNGT 1 cut(s) 538
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 6 cut(s) 30, 118, 395, 419, 515, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
HpyF3I CTNAG 6 cut(s) 239, 330, 501, 545, 831, 843
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 3 cut(s) 284, 556, 648
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 4 cut(s) 495, 557, 630, 874
Lsp1109I GCAGC 2 cut(s) 130, 511
LweI GCATC 2 cut(s) 39, 382
MaeI CTAG 4 cut(s) 60, 90, 383, 863
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 3 cut(s) 350, 548, 572
MalI GATC 4 cut(s) 497, 559, 632, 876
MboI GATC 4 cut(s) 495, 557, 630, 874
MboII GAAGA 5 cut(s) 118, 298, 631, 742, 773
MfeI CAATTG 2 cut(s) 600, 657
MflI RGATCY 2 cut(s) 557, 630
MluCI AATT 2 cut(s) 600, 657
MlyI GAGTC 2 cut(s) 65, 103
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 2 cut(s) 243, 885
MspI CCGG 5 cut(s) 124, 135, 161, 174, 626
MspR9I CCNGG 3 cut(s) 161, 348, 564
MunI CAATTG 2 cut(s) 600, 657
MvaI CCWGG 2 cut(s) 348, 564
MwoI GCNNNNNNNGC 5 cut(s) 51, 60, 124, 512, 521
NciI CCSGG 1 cut(s) 161
NdeII GATC 4 cut(s) 495, 557, 630, 874
NlaIII CATG 3 cut(s) 284, 556, 648
NmuCI GTSAC 1 cut(s) 548
NspV TTCGAA 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 135
PfeI GAWTC 4 cut(s) 319, 460, 472, 767
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 2 cut(s) 120, 526
PleI GAGTC 2 cut(s) 65, 103
PpsI GAGTC 2 cut(s) 65, 103
Psp1406I AACGTT 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 346, 562
PspGI CCWGG 2 cut(s) 346, 562
PspPI GGNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 842
PsuI RGATCY 2 cut(s) 557, 630
PvuII CAGCTG 2 cut(s) 243, 885
RsaI GTAC 2 cut(s) 67, 146
RsaNI GTAC 2 cut(s) 66, 145
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 2 cut(s) 119, 525
Sau3AI GATC 4 cut(s) 495, 557, 630, 874
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 2 cut(s) 65, 103
ScrFI CCNGG 3 cut(s) 161, 348, 564
SfaNI GCATC 2 cut(s) 39, 382
SfuI TTCGAA 1 cut(s) 202
SgrAI CRCCGGYG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 382
Sse9I AATT 2 cut(s) 600, 657
SsiI CCGC 1 cut(s) 637
SspMI CTAG 4 cut(s) 60, 90, 383, 863
StyD4I CCNGG 3 cut(s) 159, 346, 562
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 1 cut(s) 538
TaiI ACGT 1 cut(s) 493
TaqI TCGA 4 cut(s) 202, 410, 721, 856
TasI AATT 2 cut(s) 600, 657
TatI WGTACW 2 cut(s) 65, 144
TfiI GAWTC 4 cut(s) 319, 460, 472, 767
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 2 cut(s) 118, 524
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 4, 239, 600, 633
TspRI CASTG 1 cut(s) 553
XspI CTAG 4 cut(s) 60, 90, 383, 863
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.