Rmu_co8456501.1_g000001

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8456501.1
OG0013990
Physical Location & Seq
Reverse (-)
2 .. 606
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8456501.1_g000001.1.cds

Sequence Viewer

Length: 532 bp
atgttcatctgcattgcttgggaaactgaagtctgggttagtcgtgttagcaactctagcactactgaccctttagatgtgtttactagagatgtggccctgaaaactcttgcgcagcaccggcctcacaccggtgctgtatacagggttctcctccctgctaacctatccagcatggaagtgttcgttgaagggattcgaagcaggaggctgtggaacagaggtgctgaaaagctcggctgttttcatatcccatcaagaaccaagccaatgcctcatgtgaagagactggctttggtgtatcaagacttggggaatctgtcatctcagttctaccgtcttccaggttactcatttctcacctctgttgttggttttctcgtttatgatgcaacacatacaagtttgaaaagtgcccaaattgttggtctaaacacaatggggaagtcgatattgattcagttcccaaatctgacatcggaagaacggttgaactccaatgcaaaatgcgcgtcatttgctgccagtggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

177

Amino Acids

19.72

Weight (kDa)

9.62

Isoelectric Point (pI)

34.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 131
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 3 cut(s) 191, 409, 493
AjnI CCWGG 1 cut(s) 343
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 280
AoxI GGCC 2 cut(s) 96, 122
ApeKI GCWGC 2 cut(s) 115, 521
ArsI GACNNNNNNTTYG 4 cut(s) 412, 444, 497, 529
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 115, 512
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 352
AsuII TTCGAA 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 2 cut(s) 127, 508
BccI CCATC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 57, 87
BisI GCNGC 2 cut(s) 116, 522
BlsI GCNGC 2 cut(s) 117, 523
Bme1390I CCNGG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 2 cut(s) 120, 131
Bse1I ACTGG 2 cut(s) 294, 525
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 294, 525
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 127, 508
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 98, 124
BshTI ACCGGT 1 cut(s) 131
BsiSI CCGG 2 cut(s) 121, 132
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 280
BsnI GGCC 2 cut(s) 98, 124
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 418
BspANI GGCC 2 cut(s) 98, 124
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 120, 131
BsrI ACTGG 2 cut(s) 294, 525
BssAI RCCGGY 2 cut(s) 120, 131
BssNAI GTATAC 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 338, 489
Bst6I CTCTTC 1 cut(s) 278
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 2 cut(s) 115, 512
BstMAI GTCTC 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 343
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 127, 508
BstV2I GAAGAC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 425
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 98, 124
BtsIMutI CAGTG 1 cut(s) 532
CfoI GCGC 2 cut(s) 115, 512
Cfr10I RCCGGY 2 cut(s) 120, 131
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 501
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 2 cut(s) 175, 278
CviJI RGCY 7 cut(s) 98, 124, 211, 235, 240, 268, 293
CviKI_1 RGCY 7 cut(s) 98, 124, 211, 235, 240, 268, 293
DdeI CTNAG 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 343
FaeI CATG 2 cut(s) 178, 281
FaiI YATR 6 cut(s) 142, 176, 249, 279, 387, 399
FatI CATG 2 cut(s) 174, 277
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 116, 522
Fsp4HI GCNGC 2 cut(s) 116, 522
FspBI CTAG 2 cut(s) 57, 87
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 2 cut(s) 114, 511
GluI GCNGC 2 cut(s) 116, 522
HaeIII GGCC 2 cut(s) 98, 124
HapII CCGG 2 cut(s) 121, 132
HgaI GACGC 1 cut(s) 501
HhaI GCGC 2 cut(s) 115, 512
Hin1II CATG 2 cut(s) 178, 281
Hin6I GCGC 2 cut(s) 113, 510
HinP1I GCGC 2 cut(s) 113, 510
HinfI GANTC 3 cut(s) 196, 316, 457
HpaII CCGG 2 cut(s) 121, 132
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 84, 142
Hpy188I TCNGA 2 cut(s) 474, 481
Hpy188III TCNNGA 2 cut(s) 258, 305
Hpy8I GTNNAC 2 cut(s) 84, 142
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 2 cut(s) 338, 489
HpyCH4V TGCA 3 cut(s) 12, 392, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 2 cut(s) 178, 281
HspAI GCGC 2 cut(s) 113, 510
Lsp1109I GCAGC 2 cut(s) 127, 508
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 57, 87
MaeIII GTNAC 1 cut(s) 347
MboII GAAGA 3 cut(s) 295, 332, 494
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 1 cut(s) 420
MnlI CCTC 6 cut(s) 135, 164, 201, 215, 285, 373
MroXI GAANNNNTTC 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 132, 179
MspI CCGG 2 cut(s) 121, 132
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
NlaIII CATG 2 cut(s) 178, 281
NmeAIII GCCGAG 1 cut(s) 216
NsbI TGCGCA 1 cut(s) 114
NspV TTCGAA 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 3 cut(s) 196, 316, 457
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 2 cut(s) 117, 523
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspPI GGNCC 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
RseI CAYNNNNRTG 2 cut(s) 132, 179
SatI GCNGC 2 cut(s) 116, 522
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 418
SetI ASST 5 cut(s) 168, 226, 237, 349, 365
SfaNI GCATC 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 132, 179
Sse9I AATT 1 cut(s) 420
SspMI CTAG 2 cut(s) 57, 87
StyD4I CCNGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 338, 489
TaqI TCGA 2 cut(s) 199, 449
TasI AATT 1 cut(s) 420
TfiI GAWTC 3 cut(s) 196, 316, 457
TscAI CASTG 1 cut(s) 532
TseI GCWGC 2 cut(s) 115, 521
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 57, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.