Rorug07G0026500

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013990
Physical Location & Seq
Forward (+)
1879542 .. 1880266
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0026500.1

Sequence Viewer

Length: 261 bp
ATGGATCACGGAGACAAGAAATCGAATGGTTACGAGACGACGTCATGGGCAGACCAGTGGGACTACACCAACAACTCGTCGTACCCTGTGGACGTCAAAGGCGGCGAGGGAACCGCCGCCAAGTGCAAGCAGAAGGTCGGCGAAGGCCTCGTGAAGACTAAAGCCGTCGCCTCCACCGGAGTCAAGAAGGTCAAGGATGGCGCCTCCTCCGGTTTCCAGTGGATCAAGGACAAGTATCAGAAGACCACCCAGAAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

86

Amino Acids

9.44

Weight (kDa)

9.46

Isoelectric Point (pI)

0.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 44, 96
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 3 cut(s) 102, 114, 117
AclWI GGATC 2 cut(s) 12, 230
AcyI GRCGYC 3 cut(s) 41, 93, 201
AfaI GTAC 1 cut(s) 83
Alw26I GTCTC 2 cut(s) 6, 29
AlwI GGATC 2 cut(s) 12, 230
AoxI GGCC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 200
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 161, 248
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 6, 29
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 2 cut(s) 103, 117
BlsI GCNGC 2 cut(s) 104, 118
BmiI GGNNCC 2 cut(s) 112, 202
BpiI GAAGAC 2 cut(s) 161, 248
BsaHI GRCGYC 3 cut(s) 41, 93, 201
BsaWI WCCGGW 2 cut(s) 176, 209
Bse1I ACTGG 2 cut(s) 55, 217
BseGI GGATG 1 cut(s) 202
BseNI ACTGG 2 cut(s) 55, 217
BseRI GAGGAG 1 cut(s) 196
BshFI GGCC 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 200
BsiSI CCGG 2 cut(s) 177, 210
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 6, 29
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 4, 222
BspACI CCGC 3 cut(s) 102, 114, 117
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 112, 202
BspPI GGATC 2 cut(s) 12, 230
BspT107I GGYRCC 1 cut(s) 200
BsrI ACTGG 2 cut(s) 55, 217
BssMI GATC 2 cut(s) 4, 222
BssNI GRCGYC 3 cut(s) 41, 93, 201
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
BstACI GRCGYC 3 cut(s) 41, 93, 201
BstC8I GCNNGC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 2 cut(s) 7, 225
BstMAI GTCTC 2 cut(s) 6, 29
BstMBI GATC 2 cut(s) 4, 222
BstV2I GAAGAC 2 cut(s) 161, 248
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 62, 224
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 45
CviJI RGCY 2 cut(s) 147, 164
CviKI_1 RGCY 2 cut(s) 147, 164
CviQI GTAC 1 cut(s) 82
DinI GGCGCC 1 cut(s) 202
DpnI GATC 2 cut(s) 6, 224
DpnII GATC 2 cut(s) 4, 222
Eco147I AGGCCT 1 cut(s) 147
EgeI GGCGCC 1 cut(s) 202
EheI GGCGCC 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 1 cut(s) 48
FaiI YATR 1 cut(s) 46
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 103, 117
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 103, 117
GlaI GCGC 1 cut(s) 202
GluI GCNGC 2 cut(s) 103, 117
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 177, 210
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 3 cut(s) 41, 93, 201
Hin1II CATG 1 cut(s) 48
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 1 cut(s) 180
HpaII CCGG 2 cut(s) 177, 210
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 151, 184
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 3 cut(s) 43, 82, 170
HpyAV CCTTC 3 cut(s) 127, 137, 181
HpyCH4IV ACGT 2 cut(s) 41, 93
HpyCH4V TGCA 1 cut(s) 126
HpySE526I ACGT 2 cut(s) 41, 93
Hsp92I GRCGYC 3 cut(s) 41, 93, 201
Hsp92II CATG 1 cut(s) 48
HspAI GCGC 1 cut(s) 201
KasI GGCGCC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 4, 222
LpnPI CCDG 5 cut(s) 68, 99, 190, 223, 230
MaeII ACGT 2 cut(s) 41, 93
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 6, 224
MboI GATC 2 cut(s) 4, 222
MboII GAAGA 2 cut(s) 166, 253
Mly113I GGCGCC 1 cut(s) 201
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 5 cut(s) 100, 158, 181, 214, 217
MspI CCGG 2 cut(s) 177, 210
NarI GGCGCC 1 cut(s) 201
NdeII GATC 2 cut(s) 4, 222
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 2 cut(s) 112, 202
PceI AGGCCT 1 cut(s) 147
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 104, 118
PleI GAGTC 1 cut(s) 188
PluTI GGCGCC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 112, 202
PsyI GACNNNGTC 1 cut(s) 40
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 2 cut(s) 103, 117
Sau3AI GATC 2 cut(s) 4, 222
SchI GAGTC 1 cut(s) 189
SetI ASST 4 cut(s) 44, 96, 138, 192
SfoI GGCGCC 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 147
SsiI CCGC 3 cut(s) 102, 114, 117
SspDI GGCGCC 1 cut(s) 200
StuI AGGCCT 1 cut(s) 147
TaiI ACGT 2 cut(s) 44, 96
TaqI TCGA 1 cut(s) 23
TauI GCSGC 2 cut(s) 105, 119
TscAI CASTG 2 cut(s) 62, 224
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 62, 224
Tth111I GACNNNGTC 1 cut(s) 40
ZraI GACGTC 2 cut(s) 42, 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.