Rroxscaffold_3G00260060

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013990
Physical Location & Seq
Forward (+)
54447473 .. 54448585
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260060.1

Sequence Viewer

Length: 885 bp
ATGTTCATCTGCATTGTTTGGGAAACTGGAGTCTGGGTTAGTCGTGTTAGCAACTCTAGCACTACTGACCCTATAGATGTGTTTAGTAGAGATGTGGCCCTGAAAACTCTTGCGCAGCACCGGCCTCACACCGGTGCTGTATACAAGGTTCTTCTCCCGGCTAACCTATCCGGCATGGAAGTGTTCGTTGAAGGGATTCGAAGCAGGAGGCTGTGGAACAGAGGTGCTGAAAAGCTCGGCTGTTTTCATATCCCATCAAGAACCAAGCCAATGCCTCATGTGAAGAGACTGGCTTTGGTGTATCAAGACTTGGGGAATCTGTCATCTCAGTTCTACCGTCTTCCAGGTTACTCATTTCTCACCTCTGTTGTTGGTTTTCTCGTTTATGATGCAACACATACAAGTTCGAAAAGTGCCAAAATGGTTGGTCTAAACACAATGGGGAAGTCGATATTGATTCAGTTCCCAAATCTGACATCGGAAGAACGGTTGAACTCCAATGCAAAATGCGCGTCATTTGCTGCCAGTGGGACGGTTTACCTCAGTGACATGATATCTCCTGGTATATGTAACACCACGGATCATGGTCATTTTTCAATTGTTGTTCCAGTGAAGAAAAAACCACTGATCCTGCGGTATTCATGGGTAGTTGCGATTGTCCTTGGAGCTCTTGCAGCTATTTTGGGGTGTTATCTTGGGATGGTGTGTATGAGACATCGGAAGAGGAAGAAGTTTCAAGATATGGAAGAACACGCTGACGACGATTCAGTTCTTGAAAATAGGTGGGTTCGTGGTAGCAAAATGCCTTCTGGTGGAGTTACAAGAACTCAGCCAGTTTCTGAGAATGGTTTCCAACACCTAGCTCCACCTGATCACTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

294

Amino Acids

32.7

Weight (kDa)

9.55

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 22 - 203 1.8e-58 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 114
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 512
AciI CCGC 1 cut(s) 634
AclWI GGATC 2 cut(s) 588, 622
AfiI CCNNNNNNNGG 2 cut(s) 131, 812
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 191, 493, 597, 737, 776
AjnI CCWGG 2 cut(s) 343, 559
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 4 cut(s) 235, 668, 677, 863
AluI AGCT 4 cut(s) 235, 668, 677, 863
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 280, 706
AlwI GGATC 2 cut(s) 588, 622
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 2 cut(s) 96, 122
ApeKI GCWGC 3 cut(s) 115, 521, 674
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 2 cut(s) 195, 848
AspLEI GCGC 2 cut(s) 115, 512
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 352
AsuII TTCGAA 2 cut(s) 199, 407
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 3 cut(s) 127, 508, 686
BccI CCATC 2 cut(s) 262, 694
BciT130I CCWGG 2 cut(s) 345, 561
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 280, 706
BfaI CTAG 2 cut(s) 57, 860
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 116, 522, 675
BlsI GCNGC 3 cut(s) 117, 523, 676
Bme1390I CCNGG 3 cut(s) 158, 345, 561
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 158, 345, 561
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 48
Bpu14I TTCGAA 2 cut(s) 199, 407
BpuMI CCSGG 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 576, 661
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 812
Bse118I RCCGGY 2 cut(s) 120, 131
Bse1I ACTGG 5 cut(s) 31, 294, 525, 608, 833
BseBI CCWGG 2 cut(s) 345, 561
BseDI CCNNGG 2 cut(s) 576, 661
BseGI GGATG 1 cut(s) 705
BseLI CCNNNNNNNGG 2 cut(s) 131, 812
BseMII CTCAG 4 cut(s) 341, 556, 831, 842
BseNI ACTGG 5 cut(s) 31, 294, 525, 608, 833
BseXI GCAGC 3 cut(s) 127, 508, 686
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 98, 124
BshTI ACCGGT 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 4 cut(s) 121, 132, 158, 171
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 131, 812
BsmAI GTCTC 2 cut(s) 280, 706
BsmFI GGGAC 1 cut(s) 544
BsnI GGCC 2 cut(s) 98, 124
Bsp119I TTCGAA 2 cut(s) 199, 407
Bsp1286I GDGCHC 1 cut(s) 670
Bsp143I GATC 3 cut(s) 580, 627, 871
BspACI CCGC 1 cut(s) 634
BspANI GGCC 2 cut(s) 98, 124
BspCNI CTCAG 4 cut(s) 340, 555, 832, 841
BspFNI CGCG 1 cut(s) 512
BspPI GGATC 2 cut(s) 588, 622
BspT104I TTCGAA 2 cut(s) 199, 407
BsrFI RCCGGY 2 cut(s) 120, 131
BsrI ACTGG 5 cut(s) 31, 294, 525, 608, 833
BssAI RCCGGY 2 cut(s) 120, 131
BssECI CCNNGG 2 cut(s) 576, 661
BssMI GATC 3 cut(s) 580, 627, 871
BssNAI GTATAC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 661
Bst1107I GTATAC 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 345, 561
Bst4CI ACNGT 3 cut(s) 338, 489, 535
Bst6I CTCTTC 2 cut(s) 278, 716
BstBI TTCGAA 2 cut(s) 199, 407
BstDEI CTNAG 4 cut(s) 327, 542, 828, 840
BstDSI CCRYGG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 705
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 2 cut(s) 115, 512
BstKTI GATC 3 cut(s) 583, 630, 874
BstMAI GTCTC 2 cut(s) 280, 706
BstMBI GATC 3 cut(s) 580, 627, 871
BstMWI GCNNNNNNNGC 5 cut(s) 57, 121, 509, 518, 674
BstNI CCWGG 2 cut(s) 345, 561
BstSCI CCNGG 3 cut(s) 156, 343, 559
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 127, 508, 686
BstV2I GAAGAC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 98, 124
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 1 cut(s) 705
BtsIMutI CAGTG 4 cut(s) 532, 550, 615, 623
CaiI CAGNNNCTG 1 cut(s) 839
CfoI GCGC 2 cut(s) 115, 512
Cfr10I RCCGGY 2 cut(s) 120, 131
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 501
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 5 cut(s) 175, 278, 550, 584, 642
DdeI CTNAG 4 cut(s) 327, 542, 828, 840
DpnI GATC 3 cut(s) 582, 629, 873
DpnII GATC 3 cut(s) 580, 627, 871
Eam1104I CTCTTC 2 cut(s) 278, 716
EarI CTCTTC 2 cut(s) 278, 716
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 1 cut(s) 670
Eco32I GATATC 1 cut(s) 555
Eco53kI GAGCTC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 668
EcoRII CCWGG 2 cut(s) 343, 559
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 5 cut(s) 178, 281, 553, 587, 645
FaqI GGGAC 1 cut(s) 544
FatI CATG 5 cut(s) 174, 277, 549, 583, 641
FbaI TGATCA 1 cut(s) 871
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 116, 522, 675
FokI GGATG 1 cut(s) 712
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 3 cut(s) 116, 522, 675
FspBI CTAG 2 cut(s) 57, 860
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 2 cut(s) 114, 511
GluI GCNGC 3 cut(s) 116, 522, 675
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 2 cut(s) 98, 124
HapII CCGG 4 cut(s) 121, 132, 158, 171
HgaI GACGC 1 cut(s) 501
HhaI GCGC 2 cut(s) 115, 512
Hin1II CATG 5 cut(s) 178, 281, 553, 587, 645
Hin6I GCGC 2 cut(s) 113, 510
HinP1I GCGC 2 cut(s) 113, 510
HinfI GANTC 5 cut(s) 30, 196, 316, 457, 764
HpaII CCGG 4 cut(s) 121, 132, 158, 171
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 142, 538
Hpy188I TCNGA 5 cut(s) 474, 481, 720, 841, 884
Hpy188III TCNNGA 4 cut(s) 258, 305, 737, 773
Hpy8I GTNNAC 2 cut(s) 142, 538
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 2 cut(s) 185, 816
HpyCH4III ACNGT 3 cut(s) 338, 489, 535
HpyCH4V TGCA 4 cut(s) 12, 392, 503, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 121, 509, 518, 674
HpyF3I CTNAG 4 cut(s) 327, 542, 828, 840
Hsp92II CATG 5 cut(s) 178, 281, 553, 587, 645
HspAI GCGC 2 cut(s) 113, 510
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 3 cut(s) 580, 627, 871
LmnI GCTCC 2 cut(s) 665, 868
Lsp1109I GCAGC 3 cut(s) 127, 508, 686
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 57, 860
MaeIII GTNAC 4 cut(s) 347, 545, 569, 817
MalI GATC 3 cut(s) 582, 629, 873
MboI GATC 3 cut(s) 580, 627, 871
MboII GAAGA 8 cut(s) 143, 295, 332, 494, 625, 733, 739, 758
MfeI CAATTG 1 cut(s) 597
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 1 cut(s) 597
MlyI GAGTC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 877
MnlI CCTC 7 cut(s) 135, 201, 215, 285, 373, 551, 717
MroXI GAANNNNTTC 2 cut(s) 195, 848
MslI CAYNNNNRTG 2 cut(s) 132, 179
MspI CCGG 4 cut(s) 121, 132, 158, 171
MspR9I CCNGG 3 cut(s) 158, 345, 561
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 2 cut(s) 345, 561
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 5 cut(s) 57, 121, 509, 518, 674
NciI CCSGG 1 cut(s) 158
NdeII GATC 3 cut(s) 580, 627, 871
NlaIII CATG 5 cut(s) 178, 281, 553, 587, 645
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 545
NsbI TGCGCA 1 cut(s) 114
NspV TTCGAA 2 cut(s) 199, 407
OliI CACNNNNGTG 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PdmI GAANNNNTTC 2 cut(s) 195, 848
PfeI GAWTC 4 cut(s) 196, 316, 457, 764
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 3 cut(s) 117, 523, 676
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 670
Psp6I CCWGG 2 cut(s) 343, 559
PspGI CCWGG 2 cut(s) 343, 559
PspPI GGNCC 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PstNI CAGNNNCTG 1 cut(s) 839
RseI CAYNNNNRTG 2 cut(s) 132, 179
SacI GAGCTC 1 cut(s) 670
SatI GCNGC 3 cut(s) 116, 522, 675
Sau3AI GATC 3 cut(s) 580, 627, 871
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 3 cut(s) 158, 345, 561
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 72
SfuI TTCGAA 2 cut(s) 199, 407
SgrAI CRCCGGYG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 132, 179
Sse9I AATT 1 cut(s) 597
SsiI CCGC 1 cut(s) 634
SspMI CTAG 2 cut(s) 57, 860
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 3 cut(s) 156, 343, 559
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 3 cut(s) 338, 489, 535
TaqI TCGA 3 cut(s) 199, 407, 449
TasI AATT 1 cut(s) 597
TfiI GAWTC 4 cut(s) 196, 316, 457, 764
TscAI CASTG 4 cut(s) 532, 550, 615, 630
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 3 cut(s) 115, 521, 674
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 236, 630, 868
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 4 cut(s) 532, 550, 615, 630
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 195, 848
XspI CTAG 2 cut(s) 57, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.