RLG00000004084

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013990
Physical Location & Seq
Reverse (-)
56028659 .. 56032034
3376 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004084

Sequence Viewer

Length: 540 bp
ATGAAAATGCTCAGATTGACGCCGGCGGGGAGAAGACATGAGGAGCCCAAAAGCCTCGATGGACCGAGTGAATCACACCCAAGCCCTCGCCGGAATCCGAATCAGACTCCTATGGCTTCTTCTTCAATCCACTACGATATTCGCTGCGCCCTTCTTCTTCACTTGGCCACGTCATCTTCATCGACATCATCGTCACCTTCGCCGTCATCGTCGTCCACGATTAGGACTCTCAGTGGCAGTGCTGGTAACAGTAACTATGTAGATGAACTACTAGAGATTTGGCCCTCCTGGTTATATGTCTGGGATGGAACCAAGCTAATGACTCAGGTGAAGAGACTGGCTTTGGTGTATGAAGACTTGGGAAATCTGTCATCTCAGTTCTACCGTCTTCCAGGTTACTCAATTCTCACCTATGTTGTTGGTTTTCTCGTTTATGATGCAACACATACAAGTTTGAAAAGTGCCAAAATGGTTGTTCTAAACACAATGGGGAAGCCGATATTGATTCAGTTCCCGAATTTGACATCGGAGGAACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

180

Amino Acids

19.86

Weight (kDa)

9.04

Isoelectric Point (pI)

63.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 103 - 177 3.1e-20 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 190
AciI CCGC 1 cut(s) 26
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 126, 457
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 2 cut(s) 287, 391
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 2 cut(s) 165, 281
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 62, 282
AsuHPI GGTGA 3 cut(s) 186, 340, 400
AvaII GGWCC 1 cut(s) 62
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 3 cut(s) 40, 360, 380
BbvI GCAGC 1 cut(s) 131
BccI CCATC 2 cut(s) 53, 299
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 289, 393
BcoDI GTCTC 1 cut(s) 328
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 289, 393
Bme18I GGWCC 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 62, 282
BmiI GGNNCC 2 cut(s) 45, 310
BmrFI CCNGG 2 cut(s) 289, 393
BmsI GCATC 1 cut(s) 427
BpiI GAAGAC 3 cut(s) 40, 360, 380
BsaHI GRCGYC 1 cut(s) 20
BsaXI ACNNNNNCTCC 1 cut(s) 521
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 289, 393
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 4 cut(s) 25, 244, 338, 389
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 167, 283
BsiSI CCGG 2 cut(s) 23, 91
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 2 cut(s) 167, 283
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 167, 283
BspCNI CTCAG 4 cut(s) 24, 243, 337, 388
BspLI GGNNCC 2 cut(s) 45, 310
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 1 cut(s) 342
BssAI RCCGGY 1 cut(s) 22
BssNI GRCGYC 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 289, 393
Bst4CI ACNGT 3 cut(s) 251, 386, 537
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 4 cut(s) 11, 230, 324, 375
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 328
BstNI CCWGG 2 cut(s) 289, 393
BstSCI CCNGG 2 cut(s) 287, 391
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 3 cut(s) 40, 360, 380
BsuRI GGCC 2 cut(s) 167, 283
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 238, 244
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 62, 282
CseI GACGC 1 cut(s) 28
CviAII CATG 1 cut(s) 38
CviJI RGCY 9 cut(s) 46, 54, 84, 116, 167, 283, 316, 341, 496
CviKI_1 RGCY 9 cut(s) 46, 54, 84, 116, 167, 283, 316, 341, 496
DdeI CTNAG 4 cut(s) 11, 230, 324, 375
DrdI GACNNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 287, 391
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 41
FaiI YATR 9 cut(s) 39, 113, 258, 295, 297, 351, 414, 435, 447
FatI CATG 1 cut(s) 37
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 272
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 167, 283
HapII CCGG 2 cut(s) 23, 91
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 149
Hin1I GRCGYC 1 cut(s) 20
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HinfI GANTC 7 cut(s) 71, 94, 100, 106, 226, 322, 505
HpaII CCGG 2 cut(s) 23, 91
HphI GGTGA 3 cut(s) 186, 340, 400
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 4 cut(s) 14, 99, 105, 529
Hpy188III TCNNGA 1 cut(s) 514
Hpy8I GTNNAC 1 cut(s) 216
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 161, 207
HpyCH4III ACNGT 3 cut(s) 251, 386, 537
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 440
HpyF3I CTNAG 4 cut(s) 11, 230, 324, 375
HpySE526I ACGT 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 20
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 170
MaeIII GTNAC 4 cut(s) 192, 245, 251, 395
MboII GAAGA 9 cut(s) 45, 111, 114, 146, 149, 168, 343, 365, 380
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 402, 517
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 3 cut(s) 100, 220, 316
MnlI CCTC 5 cut(s) 34, 65, 96, 295, 523
Mox20I TGGCCA 1 cut(s) 167
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 2 cut(s) 23, 91
MspR9I CCNGG 2 cut(s) 289, 393
MvaI CCWGG 2 cut(s) 289, 393
NaeI GCCGGC 1 cut(s) 24
NgoMIV GCCGGC 1 cut(s) 22
NlaIII CATG 1 cut(s) 41
NlaIV GGNNCC 2 cut(s) 45, 310
NmuCI GTSAC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 3 cut(s) 188, 206, 215
PdiI GCCGGC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 71, 94, 100, 505
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 3 cut(s) 100, 220, 316
PpsI GAGTC 3 cut(s) 100, 220, 316
Psp6I CCWGG 2 cut(s) 287, 391
PspGI CCWGG 2 cut(s) 287, 391
PspN4I GGNNCC 2 cut(s) 45, 310
PspPI GGNCC 2 cut(s) 62, 282
SatI GCNGC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 62, 282
SchI GAGTC 3 cut(s) 100, 220, 316
ScrFI CCNGG 2 cut(s) 289, 393
SduI GDGCHC 1 cut(s) 48
SetI ASST 6 cut(s) 173, 199, 318, 330, 397, 413
SfaNI GCATC 1 cut(s) 427
SgrAI CRCCGGYG 1 cut(s) 22
SinI GGWCC 1 cut(s) 62
Sse9I AATT 2 cut(s) 402, 517
SsiI CCGC 1 cut(s) 26
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 287, 391
TaaI ACNGT 3 cut(s) 251, 386, 537
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 57, 182
TaqII GACCGA 1 cut(s) 79
TasI AATT 2 cut(s) 402, 517
TfiI GAWTC 4 cut(s) 71, 94, 100, 505
TscAI CASTG 2 cut(s) 238, 244
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 4 cut(s) 17, 168, 279, 366
TspRI CASTG 2 cut(s) 238, 244
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 517
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.