RLG00000004085

Protein of unknown function (DUF1191)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013990
Physical Location & Seq
Forward (+)
56037883 .. 56039115
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004085

Sequence Viewer

Length: 888 bp
ATGTTCATCTGCATTGTTTGGGAAACTGAAGTCTGGGTTAGTCGTGTTAGCAACTCTAGCACTACTGACCCTTTAGATGTGTTTACTAGAGATGTGGCCCTGAAAACTCTTGCGCAGCACCGGCCTCACACCGGTGCTGTATACAAGGTTCTCCTCCCGGCTAACCTATCCGGCATGGAAGTGTTCGTTGAAGGGATTCGAAGCAGGAGGCTGTGGAACATAGGTGCTGAAAAGCTCGGCTGTTTTCATATTCCATCAAGAACCAAGCCAATGCCTCATGTGAAGAGACTGGCTTTGGTGTATCAAGACTTGGGGAATCTGTCATCTCAGTTCTACCGTCTTCCAGGTTACTCATTTCTCACCTCTGTTGTTGGTTTTCTTGTTTATGATGCAACACATACAAGTTCGAAAAGTGCCAAAATGGTTGGTCTAAACACAATGGGGAATTCGATATTGATTCAGTTCCCAAATCTGACATCGGAAGAACGGTTGAACTCCAATGCAAAATGCGCGTCATTTGCTGCCAGTGGGACGGTTTACCTCAGTGACATGATATCTCCTGGTATGTGTAACACCACCACGGATCATGGTCATTTTTCAATTGTTGTTCCAGTGAAGAAAAAACCACTGATCCTGCGGTATTCATGGGTAGTTGCGATTGTCCTTGGAGTTCTTGCAGCTATTTTGGGGTGTTATCTTGGGATGGTGTGTATGAGACATCGGAAGAGGAAGAAGTTTCAAGATATGGAAGAACAGGCTGACGATGATTCAGTTCTTGAAAATAGGTGGGTTCGTGGTAGCAAAATGCCTTCTGGTGGCGTTATAAGAACTCAGCCAGTTTCTGAGAATGGTTTCCAACACCTAGCTTCACCTGATCAGTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1191

Protein Analysis

296

Amino Acids

32.86

Weight (kDa)

9.31

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1191 PF06697 22 - 204 1.9e-57 Protein of unknown function (DUF1191)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23720
fragaria_vesca FvH4_5g03780
malus_domestica MD06G1098600.v1.1 MD14G1117800.v1.1
prunus_persica Prupe.5G112200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0195831
rosa_laevigata RLG00000004084 RLG00000004085
rosa_multiflora Rmu_co8456501.1_g000001 Rmu_sc0002445.1_g000012
rosa_roxburghii Rroxscaffold_3G00260060
rosa_rugosa Rorug07G0026500
rosa_samantha Rh7AG154500 Rh7BG156300 Rh7CG160000 Rh7DG155400
rosa_wichuraiana Rw7G013200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 824
Acc16I TGCGCA 1 cut(s) 114
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 512
AciI CCGC 1 cut(s) 637
AclWI GGATC 2 cut(s) 591, 625
AcsI RAATTY 1 cut(s) 445
AcuI CTGAAG 1 cut(s) 48
AfiI CCNNNNNNNGG 2 cut(s) 131, 815
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 191, 493, 600, 740, 779
AjnI CCWGG 2 cut(s) 343, 559
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 3 cut(s) 235, 680, 866
AluI AGCT 3 cut(s) 235, 680, 866
Alw26I GTCTC 2 cut(s) 280, 709
AlwI GGATC 2 cut(s) 591, 625
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 96, 122
ApeKI GCWGC 3 cut(s) 115, 521, 677
ApoI RAATTY 1 cut(s) 445
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 2 cut(s) 195, 851
AspLEI GCGC 2 cut(s) 115, 512
AspS9I GGNCC 1 cut(s) 97
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 352, 861
AsuII TTCGAA 2 cut(s) 199, 407
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 3 cut(s) 127, 508, 689
BccI CCATC 2 cut(s) 262, 697
BciT130I CCWGG 2 cut(s) 345, 561
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 2 cut(s) 280, 709
BfaI CTAG 3 cut(s) 57, 87, 863
BisI GCNGC 3 cut(s) 116, 522, 678
BlsI GCNGC 3 cut(s) 117, 523, 679
Bme1390I CCNGG 3 cut(s) 158, 345, 561
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 158, 345, 561
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 2 cut(s) 199, 407
BpuMI CCSGG 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 579, 664
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 815
Bse118I RCCGGY 2 cut(s) 120, 131
Bse1I ACTGG 4 cut(s) 294, 525, 611, 836
BseBI CCWGG 2 cut(s) 345, 561
BseDI CCNNGG 2 cut(s) 579, 664
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 131, 815
BseMII CTCAG 4 cut(s) 341, 556, 834, 845
BseNI ACTGG 4 cut(s) 294, 525, 611, 836
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 127, 508, 689
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 98, 124
BshTI ACCGGT 1 cut(s) 131
BsiSI CCGG 4 cut(s) 121, 132, 158, 171
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 2 cut(s) 131, 815
BsmAI GTCTC 2 cut(s) 280, 709
BsmFI GGGAC 1 cut(s) 544
BsnI GGCC 2 cut(s) 98, 124
Bsp119I TTCGAA 2 cut(s) 199, 407
Bsp143I GATC 3 cut(s) 583, 630, 874
BspACI CCGC 1 cut(s) 637
BspANI GGCC 2 cut(s) 98, 124
BspCNI CTCAG 4 cut(s) 340, 555, 835, 844
BspFNI CGCG 1 cut(s) 512
BspPI GGATC 2 cut(s) 591, 625
BspT104I TTCGAA 2 cut(s) 199, 407
BsrFI RCCGGY 2 cut(s) 120, 131
BsrI ACTGG 4 cut(s) 294, 525, 611, 836
BssAI RCCGGY 2 cut(s) 120, 131
BssECI CCNNGG 2 cut(s) 579, 664
BssMI GATC 3 cut(s) 583, 630, 874
BssNAI GTATAC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 664
Bst1107I GTATAC 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 345, 561
Bst4CI ACNGT 3 cut(s) 338, 489, 535
Bst6I CTCTTC 2 cut(s) 278, 719
BstBI TTCGAA 2 cut(s) 199, 407
BstDEI CTNAG 4 cut(s) 327, 542, 831, 843
BstDSI CCRYGG 1 cut(s) 579
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 512
BstHHI GCGC 2 cut(s) 115, 512
BstKTI GATC 3 cut(s) 586, 633, 877
BstMAI GTCTC 2 cut(s) 280, 709
BstMBI GATC 3 cut(s) 583, 630, 874
BstMWI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
BstNI CCWGG 2 cut(s) 345, 561
BstSCI CCNGG 3 cut(s) 156, 343, 559
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 3 cut(s) 127, 508, 689
BstV2I GAAGAC 1 cut(s) 332
BstZ17I GTATAC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 98, 124
BtgI CCRYGG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 708
BtsIMutI CAGTG 4 cut(s) 532, 550, 618, 626
CaiI CAGNNNCTG 1 cut(s) 842
CfoI GCGC 2 cut(s) 115, 512
Cfr10I RCCGGY 2 cut(s) 120, 131
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 501
CspAI ACCGGT 1 cut(s) 131
CviAII CATG 5 cut(s) 175, 278, 550, 587, 645
DdeI CTNAG 4 cut(s) 327, 542, 831, 843
DpnI GATC 3 cut(s) 585, 632, 876
DpnII GATC 3 cut(s) 583, 630, 874
Eam1104I CTCTTC 2 cut(s) 278, 719
EarI CTCTTC 2 cut(s) 278, 719
Eco130I CCWWGG 1 cut(s) 664
Eco32I GATATC 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 343, 559
EcoRV GATATC 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 5 cut(s) 178, 281, 553, 590, 648
FaqI GGGAC 1 cut(s) 544
FatI CATG 5 cut(s) 174, 277, 549, 586, 644
FbaI TGATCA 1 cut(s) 874
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 116, 522, 678
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 3 cut(s) 116, 522, 678
FspBI CTAG 3 cut(s) 57, 87, 863
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 2 cut(s) 114, 511
GluI GCNGC 3 cut(s) 116, 522, 678
HaeIII GGCC 2 cut(s) 98, 124
HapII CCGG 4 cut(s) 121, 132, 158, 171
HgaI GACGC 1 cut(s) 501
HhaI GCGC 2 cut(s) 115, 512
Hin1II CATG 5 cut(s) 178, 281, 553, 590, 648
Hin6I GCGC 2 cut(s) 113, 510
HinP1I GCGC 2 cut(s) 113, 510
HinfI GANTC 4 cut(s) 196, 316, 457, 767
HpaII CCGG 4 cut(s) 121, 132, 158, 171
HphI GGTGA 2 cut(s) 352, 861
Hpy166II GTNNAC 3 cut(s) 84, 142, 538
Hpy188I TCNGA 5 cut(s) 474, 481, 723, 844, 887
Hpy188III TCNNGA 4 cut(s) 258, 305, 740, 776
Hpy8I GTNNAC 3 cut(s) 84, 142, 538
HpyAV CCTTC 2 cut(s) 185, 819
HpyCH4III ACNGT 3 cut(s) 338, 489, 535
HpyCH4V TGCA 4 cut(s) 12, 392, 503, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
HpyF3I CTNAG 4 cut(s) 327, 542, 831, 843
Hsp92II CATG 5 cut(s) 178, 281, 553, 590, 648
HspAI GCGC 2 cut(s) 113, 510
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 3 cut(s) 583, 630, 874
Lsp1109I GCAGC 3 cut(s) 127, 508, 689
LweI GCATC 1 cut(s) 379
MaeI CTAG 3 cut(s) 57, 87, 863
MaeIII GTNAC 3 cut(s) 347, 545, 569
MalI GATC 3 cut(s) 585, 632, 876
MboI GATC 3 cut(s) 583, 630, 874
MboII GAAGA 7 cut(s) 295, 332, 494, 628, 736, 742, 761
MfeI CAATTG 1 cut(s) 600
MluCI AATT 2 cut(s) 445, 600
MmeI TCCRAC 1 cut(s) 880
MnlI CCTC 7 cut(s) 135, 164, 201, 285, 373, 551, 720
MroXI GAANNNNTTC 2 cut(s) 195, 851
MslI CAYNNNNRTG 2 cut(s) 132, 179
MspI CCGG 4 cut(s) 121, 132, 158, 171
MspR9I CCNGG 3 cut(s) 158, 345, 561
MunI CAATTG 1 cut(s) 600
MvaI CCWGG 2 cut(s) 345, 561
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 4 cut(s) 57, 121, 509, 518
NciI CCSGG 1 cut(s) 158
NdeII GATC 3 cut(s) 583, 630, 874
NlaIII CATG 5 cut(s) 178, 281, 553, 590, 648
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 545
NsbI TGCGCA 1 cut(s) 114
NspV TTCGAA 2 cut(s) 199, 407
OliI CACNNNNGTG 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 195, 851
PfeI GAWTC 4 cut(s) 196, 316, 457, 767
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 3 cut(s) 117, 523, 679
PsiI TTATAA 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 343, 559
PspGI CCWGG 2 cut(s) 343, 559
PspPI GGNCC 1 cut(s) 97
PsrI GAACNNNNNNTAC 2 cut(s) 132, 164
PstNI CAGNNNCTG 1 cut(s) 842
RseI CAYNNNNRTG 2 cut(s) 132, 179
SatI GCNGC 3 cut(s) 116, 522, 678
Sau3AI GATC 3 cut(s) 583, 630, 874
Sau96I GGNCC 1 cut(s) 97
ScrFI CCNGG 3 cut(s) 158, 345, 561
SfaNI GCATC 1 cut(s) 379
SfuI TTCGAA 2 cut(s) 199, 407
SgrAI CRCCGGYG 1 cut(s) 131
SmiMI CAYNNNNRTG 2 cut(s) 132, 179
Sse9I AATT 2 cut(s) 445, 600
SsiI CCGC 1 cut(s) 637
SspMI CTAG 3 cut(s) 57, 87, 863
StyD4I CCNGG 3 cut(s) 156, 343, 559
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 338, 489, 535
TaqI TCGA 3 cut(s) 199, 407, 449
TasI AATT 2 cut(s) 445, 600
TfiI GAWTC 4 cut(s) 196, 316, 457, 767
TscAI CASTG 4 cut(s) 532, 550, 618, 633
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 3 cut(s) 115, 521, 677
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 236, 633, 871
TspGWI ACGGA 1 cut(s) 596
TspRI CASTG 4 cut(s) 532, 550, 618, 633
XapI RAATTY 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 195, 851
XspI CTAG 3 cut(s) 57, 87, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.