AT4G25370

Clp amino terminal domain, pathogenicity island component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012795
Physical Location & Seq
Forward (+)
12972685 .. 12974963
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25370.1

Sequence Viewer

Length: 717 bp
ATGGCGTCGTACACAGTCTCCTTTATCCCTTTGACGCTCTCTAATCCTCGGATCTTTGTTTCGAGACAGAATGGATCTCCCTCGTCTTCTTCTCGGATTCCTCTAACGTCTTCTCTGTTAGGTAAGAAGCTTCTGGCGACACAACCGTCGCATCGCTGCTTCGTCCCCAAGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCGCAACCGGAGAATGGTTCTTCGGATAAGATCCCAAAATGGTCGGCGAGAGCTATAAAGTCACTTGCAATGGGAGAATTGGAGGCTAGGAAGCTCAAGTATCCAAGTACCGGGACCGAAGCCATTCTCATGGGTATTTTAGTCGAAGGCACTAGCACAGTTGCTAAGTTCCTGAGGGGGAATGGAGTCACACTTTTCAAGGTTCGAGATGAGACGTTAAGCCTGCTGGGGAAATCAGACATGTACTTTTTCAGCCCAGAGCATCCTCCTCTAACTGAGCCGGCTCAAAAGGCCATTGCCTGGGCCATTGATGAGAAGAATAAATCTGATGTGGATGGGGAACTAACCACGGCCTACTTGCTTCTGGGGGTTTGGTCTCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTTAACGAAGATAAAGCCAAAGAAGTTGAGAAATCGATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAGGTCAATAG

Protein Analysis

238

Amino Acids

26.05

Weight (kDa)

9.24

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 87 - 210 2e-10 Clp repeat (R) N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25370
fragaria_vesca FvH4_7g00050
malus_domestica MD00G1055600.v1.1 MD02G1320000.v1.1
prunus_persica Prupe.2G002100_v2.0.a1
pyrus_communis pycom07g00100
rosa_chinensis RchiOBHm_Chr1g0313031 RchiOBHm_Chr1g0313191
rosa_laevigata RLG00000030817
rosa_multiflora Rmu_co8509777.1_g000001
rosa_roxburghii Rroxscaffold_4G00332400
rosa_rugosa RorugPtG0001300.1
rosa_samantha Rh1AG000400 Rh1AG001500 Rh1CG003500 Rh1CG006100 Rh1DG001400
rosa_wichuraiana Rw1G000050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
Acc16I TGCGCA 1 cut(s) 219
AccB7I CCANNNNNTGG 2 cut(s) 516, 622
AciI CCGC 1 cut(s) 613
AclWI GGATC 3 cut(s) 59, 82, 241
AcoI YGGCCR 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 11, 325, 461
AfiI CCNNNNNNNGG 5 cut(s) 174, 230, 326, 516, 622
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 2 cut(s) 415, 700
AjnI CCWGG 1 cut(s) 515
AluBI AGCT 6 cut(s) 130, 172, 269, 310, 631, 696
AluI AGCT 6 cut(s) 130, 172, 269, 310, 631, 696
Alw26I GTCTC 4 cut(s) 22, 58, 422, 597
AlwI GGATC 3 cut(s) 59, 82, 241
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 5 cut(s) 189, 507, 519, 567, 610
ApeKI GCWGC 1 cut(s) 156
Asp700I GAANNNNTTC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 330, 519
AsuC2I CCSGG 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 330
AxyI CCTNAGG 1 cut(s) 389
BbsI GAAGAC 2 cut(s) 78, 102
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 545
BceAI ACGGC 1 cut(s) 582
BciT130I CCWGG 1 cut(s) 517
BciVI GTATCC 1 cut(s) 327
BcnI CCSGG 1 cut(s) 328
BcoDI GTCTC 4 cut(s) 22, 58, 422, 597
BfaI CTAG 2 cut(s) 303, 369
BfuI GTATCC 1 cut(s) 327
BisI GCNGC 2 cut(s) 157, 613
BlsI GCNGC 2 cut(s) 158, 614
Bme1390I CCNGG 2 cut(s) 328, 517
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 330, 519
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 328, 517
BmsI GCATC 2 cut(s) 160, 487
BpiI GAAGAC 2 cut(s) 78, 102
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 671
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 47, 186, 516, 564
BsaWI WCCGGW 2 cut(s) 174, 223
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 230, 326, 516, 622
Bse118I RCCGGY 1 cut(s) 496
Bse21I CCTNAGG 1 cut(s) 389
Bse3DI GCAATG 2 cut(s) 291, 510
BseBI CCWGG 1 cut(s) 517
BseCI ATCGAT 1 cut(s) 671
BseDI CCNNGG 4 cut(s) 47, 186, 516, 564
BseGI GGATG 2 cut(s) 478, 556
BseLI CCNNNNNNNGG 5 cut(s) 174, 230, 326, 516, 622
BseMI GCAATG 2 cut(s) 291, 510
BseMII CTCAG 2 cut(s) 380, 483
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 5 cut(s) 191, 509, 521, 569, 612
BshVI ATCGAT 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 4 cut(s) 175, 224, 327, 497
BslFI GGGAC 3 cut(s) 149, 194, 343
BslI CCNNNNNNNGG 5 cut(s) 174, 230, 326, 516, 622
BsmAI GTCTC 4 cut(s) 22, 58, 422, 597
BsmBI CGTCTC 1 cut(s) 422
BsmFI GGGAC 3 cut(s) 149, 194, 343
BsnI GGCC 5 cut(s) 191, 509, 521, 569, 612
Bso31I GGTCTC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 632
Bsp143I GATC 3 cut(s) 51, 74, 246
BspACI CCGC 1 cut(s) 613
BspANI GGCC 5 cut(s) 191, 509, 521, 569, 612
BspCNI CTCAG 2 cut(s) 381, 484
BspDI ATCGAT 1 cut(s) 671
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 3 cut(s) 59, 82, 241
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 291, 510
BsrFI RCCGGY 1 cut(s) 496
BssAI RCCGGY 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 47, 186, 516, 564
BssMI GATC 3 cut(s) 51, 74, 246
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 517
Bst4CI ACNGT 4 cut(s) 16, 147, 199, 376
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 4 cut(s) 193, 440, 498, 610
BstDEI CTNAG 3 cut(s) 381, 389, 492
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 478, 556
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 3 cut(s) 54, 77, 249
BstMAI GTCTC 4 cut(s) 22, 58, 422, 597
BstMBI GATC 3 cut(s) 51, 74, 246
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 2 cut(s) 326, 515
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 2 cut(s) 78, 102
BstX2I RGATCY 3 cut(s) 51, 74, 246
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 3 cut(s) 51, 74, 246
Bsu15I ATCGAT 1 cut(s) 671
Bsu36I CCTNAGG 1 cut(s) 389
BsuI GTATCC 1 cut(s) 327
BsuRI GGCC 5 cut(s) 191, 509, 521, 569, 612
BsuTUI ATCGAT 1 cut(s) 671
BtgI CCRYGG 1 cut(s) 564
BtgZI GCGATG 1 cut(s) 137
BtsCI GGATG 2 cut(s) 478, 556
Cac8I GCNNGC 4 cut(s) 193, 440, 498, 610
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 330, 519
ClaI ATCGAT 1 cut(s) 671
CseI GACGC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 10, 324, 460
CviAII CATG 2 cut(s) 346, 457
CviQI GTAC 3 cut(s) 10, 324, 460
DdeI CTNAG 3 cut(s) 381, 389, 492
DpnI GATC 3 cut(s) 53, 76, 248
DpnII GATC 3 cut(s) 51, 74, 246
DrdI GACNNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 330
Eco81I CCTNAGG 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 422
FaeI CATG 2 cut(s) 349, 460
FaiI YATR 3 cut(s) 272, 347, 458
FaqI GGGAC 3 cut(s) 149, 194, 343
FatI CATG 2 cut(s) 345, 456
Fnu4HI GCNGC 2 cut(s) 157, 613
FokI GGATG 2 cut(s) 465, 563
Fsp4HI GCNGC 2 cut(s) 157, 613
FspBI CTAG 2 cut(s) 303, 369
FspI TGCGCA 1 cut(s) 219
GlaI GCGC 1 cut(s) 219
GluI GCNGC 2 cut(s) 157, 613
GsaI CCCAGC 1 cut(s) 446
HaeIII GGCC 5 cut(s) 191, 509, 521, 569, 612
HapII CCGG 4 cut(s) 175, 224, 327, 497
HgaI GACGC 1 cut(s) 43
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 349, 460
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 97, 402, 602
HpaII CCGG 4 cut(s) 175, 224, 327, 497
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 5 cut(s) 51, 96, 241, 454, 544
Hpy188III TCNNGA 4 cut(s) 63, 388, 422, 700
Hpy8I GTNNAC 1 cut(s) 12
Hpy99I CGWCG 2 cut(s) 10, 151
HpyAV CCTTC 1 cut(s) 356
HpyCH4III ACNGT 4 cut(s) 16, 147, 199, 376
HpyCH4IV ACGT 3 cut(s) 107, 207, 431
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 3 cut(s) 381, 389, 492
HpySE526I ACGT 3 cut(s) 107, 207, 431
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 349, 460
HspAI GCGC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
Kzo9I GATC 3 cut(s) 51, 74, 246
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 2 cut(s) 160, 487
MaeI CTAG 2 cut(s) 303, 369
MaeII ACGT 3 cut(s) 107, 207, 431
MaeIII GTNAC 2 cut(s) 276, 403
MalI GATC 3 cut(s) 53, 76, 248
MboI GATC 3 cut(s) 51, 74, 246
MboII GAAGA 7 cut(s) 78, 81, 102, 228, 544, 656, 692
MflI RGATCY 3 cut(s) 51, 74, 246
MluCI AATT 1 cut(s) 293
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 8 cut(s) 57, 91, 111, 196, 292, 384, 492, 495
MroNI GCCGGC 1 cut(s) 496
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 3 cut(s) 203, 434, 639
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 4 cut(s) 175, 224, 327, 497
MspR9I CCNGG 2 cut(s) 328, 517
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 1 cut(s) 506
NaeI GCCGGC 1 cut(s) 498
NciI CCSGG 1 cut(s) 328
NdeII GATC 3 cut(s) 51, 74, 246
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 2 cut(s) 349, 460
NlaIV GGNNCC 1 cut(s) 331
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 276, 403
NsbI TGCGCA 1 cut(s) 219
NspI RCATGY 1 cut(s) 460
PciI ACATGT 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 639
PdiI GCCGGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 97, 602
PflMI CCANNNNNTGG 2 cut(s) 516, 622
PkrI GCNGC 2 cut(s) 158, 614
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PscI ACATGT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 330, 519
PsuI RGATCY 3 cut(s) 51, 74, 246
RsaI GTAC 3 cut(s) 11, 325, 461
RsaNI GTAC 3 cut(s) 10, 324, 460
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 3 cut(s) 203, 434, 639
SatI GCNGC 2 cut(s) 157, 613
Sau3AI GATC 3 cut(s) 51, 74, 246
Sau96I GGNCC 2 cut(s) 330, 519
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 328, 517
SfaNI GCATC 2 cut(s) 160, 487
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 293
SsiI CCGC 1 cut(s) 613
SspMI CTAG 2 cut(s) 303, 369
StyD4I CCNGG 2 cut(s) 326, 515
TaaI ACNGT 4 cut(s) 16, 147, 199, 376
TaiI ACGT 3 cut(s) 110, 210, 434
TaqI TCGA 4 cut(s) 62, 360, 421, 671
TaqII GACCGA 1 cut(s) 347
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 2 cut(s) 97, 602
Tru1I TTAA 3 cut(s) 203, 434, 639
Tru9I TTAA 3 cut(s) 203, 434, 639
TseFI GTSAC 2 cut(s) 276, 403
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 2 cut(s) 276, 403
TspDTI ATGAA 2 cut(s) 689, 693
Van91I CCANNNNNTGG 2 cut(s) 516, 622
VpaK11BI GGWCC 1 cut(s) 330
XceI RCATGY 1 cut(s) 460
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 2 cut(s) 303, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.