Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012795

Physical Location & Seq

Genomic Coordinates Reverse (-)

66523729 .. 66526093

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGACCTCCGTTTCCATCACACTGTCAGCTCTCTCAGTCTCACTCTCTACCACCGAACCACCTTCCCTTAGAAAGCCTAGCAATTCAACACCCTGCAACCTATCGACCTCATTCCTTGGCAGAAAGCTCTCCGTTGGAATTCCACATTCAAACAAGTTGGCTTTAAAACATACAACAGCGGTCGCCACCATTCTCTTCAGCCTCCCAACAGGGAAACCAGAGAGGATTTCTTCTGGGAAAACCTCACAATGGTCAGCCAGAGCGATTAAGTCGTTTGCTATGGGTGAATTGGAAGCAAGGAAGCTCAAGTATCCCAATACTGGCACGGAAGCCCTTCTTATGGGAATTTTAGTTGAGGGAACAAGTATAGCTGCGAAGTTTCTCAGAGCTAATGGAATCACGCTTTTCAAGGTTCGAGAAGAAGCTGTAAAGTTACTTGGAAAGTCAGACATGTACTTTTTCAGCCCGGAGCATCCTCCATTGACTGAGCCAGCTCAGAGGGCCCTTGACTGGGCTGTAGATCTAAAACTGAAGTCAGGAGACAGTGGGGAAATAACAGTAACTCATCTGCTTCTCGGGATTTGGTCTGAAAAAGAGTCAGCAGGTCACAAGATCTTGGTGTCCCTGGGTTTTGATGATGAGAAAGCAAAAGAGCTTTCTGTGTCTATGGACAAGGATTATGTTCTTAGCTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

232

Amino Acids

25.15

Weight (kDa)

9.32

Isoelectric Point (pI)

21.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	87 - 207	4.2e-15	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25370
fragaria_vesca	FvH4_7g00050
malus_domestica	MD00G1055600.v1.1 MD02G1320000.v1.1
prunus_persica	Prupe.2G002100_v2.0.a1
pyrus_communis	pycom07g00100
rosa_chinensis	RchiOBHm_Chr1g0313031 RchiOBHm_Chr1g0313191
rosa_laevigata	RLG00000030817
rosa_multiflora	Rmu_co8509777.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332400
rosa_rugosa	RorugPtG0001300.1
rosa_samantha	Rh1AG000400 Rh1AG001500 Rh1CG003500 Rh1CG006100 Rh1DG001400
rosa_wichuraiana	Rw1G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	138, 345
AcuI	CTGAAG	2 cut(s)	181, 551
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	5 cut(s)	249, 320, 340, 510, 511
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	87, 150, 409
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	9 cut(s)	29, 127, 304, 371, 389, 425, 494, 655, 690
AluI	AGCT	9 cut(s)	29, 127, 304, 371, 389, 425, 494, 655, 690
Alw26I	GTCTC	2 cut(s)	43, 534
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	501
ApaI	GGGCCC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	138, 345
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	501, 502
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	43, 534
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	321
BglII	AGATCT	2 cut(s)	520, 612
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	467, 626
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	2 cut(s)	501, 502
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	467, 626
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	520
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	115, 624, 625
Bsc4I	CCNNNNNNNGG	5 cut(s)	249, 320, 340, 510, 511
Bse1I	ACTGG	2 cut(s)	325, 515
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	115, 624, 625
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	5 cut(s)	249, 320, 340, 510, 511
BseMII	CTCAG	4 cut(s)	48, 397, 477, 509
BseNI	ACTGG	2 cut(s)	325, 515
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	503
BsiEI	CGRYCG	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	5 cut(s)	249, 320, 340, 510, 511
BsmAI	GTCTC	2 cut(s)	43, 534
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	575
Bsp120I	GGGCCC	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp143I	GATC	2 cut(s)	520, 612
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	4 cut(s)	47, 396, 478, 508
BspLI	GGNNCC	1 cut(s)	503
BspMI	ACCTGC	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	325, 515
BssECI	CCNNGG	3 cut(s)	115, 624, 625
BssMI	GATC	2 cut(s)	520, 612
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	24, 545, 559
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	6 cut(s)	34, 68, 383, 486, 495, 686
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	2 cut(s)	523, 615
BstMAI	GTCTC	2 cut(s)	43, 534
BstMBI	GATC	2 cut(s)	520, 612
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	465, 624
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	505
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	520, 612
BstYI	RGATCY	2 cut(s)	520, 612
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	20, 550
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	501, 502
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	6 cut(s)	34, 68, 383, 486, 495, 686
DpnI	GATC	2 cut(s)	522, 614
DpnII	GATC	2 cut(s)	520, 612
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	181, 551
Eco88I	CYCGRG	1 cut(s)	575
EcoO109I	RGGNCCY	2 cut(s)	501, 502
EcoRI	GAATTC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	454
FaiI	YATR	8 cut(s)	171, 281, 341, 368, 452, 668, 681, 693
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	459
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	1 cut(s)	454
HinfI	GANTC	2 cut(s)	396, 596
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	4 cut(s)	386, 448, 498, 589
Hpy188III	TCNNGA	3 cut(s)	416, 537, 577
HpyAV	CCTTC	2 cut(s)	72, 344
HpyCH4III	ACNGT	3 cut(s)	24, 545, 559
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	6 cut(s)	34, 68, 383, 486, 495, 686
Hsp92II	CATG	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	520, 612
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	3 cut(s)	432, 559, 605
MalI	GATC	2 cut(s)	522, 614
MboI	GATC	2 cut(s)	520, 612
MboII	GAAGA	3 cut(s)	187, 222, 431
MflI	RGATCY	2 cut(s)	520, 612
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	4 cut(s)	82, 138, 287, 345
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	8 cut(s)	16, 118, 212, 216, 253, 349, 486, 492
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	2 cut(s)	164, 267
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	467, 626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	2 cut(s)	520, 612
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	1 cut(s)	503
NmuCI	GTSAC	1 cut(s)	605
NspI	RCATGY	1 cut(s)	454
PasI	CCCWGGG	1 cut(s)	625
PciI	ACATGT	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PscI	ACATGT	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	503
PspOMI	GGGCCC	1 cut(s)	501
PspPI	GGNCC	2 cut(s)	501, 502
PsuI	RGATCY	2 cut(s)	520, 612
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	164, 267
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	520, 612
Sau96I	GGNCC	2 cut(s)	501, 502
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	467, 626
SduI	GDGCHC	1 cut(s)	505
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	82, 138, 287, 345
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	465, 624
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	3 cut(s)	24, 545, 559
TaqI	TCGA	2 cut(s)	104, 415
TasI	AATT	4 cut(s)	82, 138, 287, 345
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	164, 267
Tru9I	TTAA	2 cut(s)	164, 267
TscAI	CASTG	2 cut(s)	27, 550
TseFI	GTSAC	1 cut(s)	605
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	605
TspGWI	ACGGA	2 cut(s)	121, 341
TspRI	CASTG	2 cut(s)	27, 550
XapI	RAATTY	2 cut(s)	138, 345
XceI	RCATGY	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.