Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8509777.1

Orthogroup ID

OG0012795

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1578

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8509777.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 512 bp

gaatttgtttgtctcctttttccaggaaaccagagaggatttcttctgggaaaagctcacaatggtcggccagagcgattaagtcgtttgctatgggtgaattggaagcaaggaagctcaagtatcccaatactggcacggaagcccttctaatgggaattttagttgagggaacaagtatagctgcgaagtttctcagagctaatggaatcacacttttcaaggttcgagaagaaactgtaaagttacttggaaagtcagacatgtactttttcagccccgagcatcctccattgaccgagccagctcagagggcccttgactgggctgtagatcaaaaactgaagtcaggagacagtggggaaataacagtaactcatctgcttctcgggatttggtctgaaaaagagtcagcaggtcacaagatcttggtggccctgggttttgatgatgagaaagcaaaagagctttctgtatctatggacaaggattatgttcctagctataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

8.6

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25370
fragaria_vesca	FvH4_7g00050
malus_domestica	MD00G1055600.v1.1 MD02G1320000.v1.1
prunus_persica	Prupe.2G002100_v2.0.a1
pyrus_communis	pycom07g00100
rosa_chinensis	RchiOBHm_Chr1g0313031 RchiOBHm_Chr1g0313191
rosa_laevigata	RLG00000030817
rosa_multiflora	Rmu_co8509777.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332400
rosa_rugosa	RorugPtG0001300.1
rosa_samantha	Rh1AG000400 Rh1AG001500 Rh1CG003500 Rh1CG006100 Rh1DG001400
rosa_wichuraiana	Rw1G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	2, 158
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	4 cut(s)	133, 153, 323, 324
AflIII	ACRYGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	22, 437
AluBI	AGCT	7 cut(s)	56, 117, 184, 202, 307, 468, 503
AluI	AGCT	7 cut(s)	56, 117, 184, 202, 307, 468, 503
Alw26I	GTCTC	2 cut(s)	17, 347
Ama87I	CYCGRG	2 cut(s)	280, 388
AoxI	GGCC	3 cut(s)	68, 314, 434
ApaI	GGGCCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	2, 158
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	314, 315, 435
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	2 cut(s)	280, 388
BaeGI	GKGCMC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	24, 439
BciVI	GTATCC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	17, 347
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	24, 439
BmeT110I	CYCGRG	2 cut(s)	280, 388
BmgT120I	GGNCC	3 cut(s)	314, 315, 435
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	24, 439
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	437, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 153, 323, 324
Bse1I	ACTGG	2 cut(s)	138, 328
BseBI	CCWGG	2 cut(s)	24, 439
BseDI	CCNNGG	2 cut(s)	437, 438
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	133, 153, 323, 324
BseMII	CTCAG	2 cut(s)	210, 322
BseNI	ACTGG	2 cut(s)	138, 328
BseSI	GKGCMC	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	3 cut(s)	70, 316, 436
BsiHKCI	CYCGRG	2 cut(s)	280, 388
BslI	CCNNNNNNNGG	4 cut(s)	133, 153, 323, 324
BsmAI	GTCTC	2 cut(s)	17, 347
BsnI	GGCC	3 cut(s)	70, 316, 436
BsoBI	CYCGRG	2 cut(s)	280, 388
Bsp120I	GGGCCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	333, 425
BspANI	GGCC	3 cut(s)	70, 316, 436
BspCNI	CTCAG	2 cut(s)	209, 321
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	138, 328
BssECI	CCNNGG	2 cut(s)	437, 438
BssMI	GATC	2 cut(s)	333, 425
Bst2UI	CCWGG	2 cut(s)	24, 439
Bst4CI	ACNGT	3 cut(s)	240, 358, 372
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	196, 308
BstF5I	GGATG	1 cut(s)	285
BstKTI	GATC	2 cut(s)	336, 428
BstMAI	GTCTC	2 cut(s)	17, 347
BstMBI	GATC	2 cut(s)	333, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	24, 439
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	2 cut(s)	22, 437
BstSFI	CTRYAG	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	70, 316, 436
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	363
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	314, 315, 435
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	1 cut(s)	264
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	2 cut(s)	196, 308
DpnI	GATC	2 cut(s)	335, 427
DpnII	GATC	2 cut(s)	333, 425
EaeI	YGGCCR	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	364
Eco88I	CYCGRG	2 cut(s)	280, 388
EcoO109I	RGGNCCY	2 cut(s)	314, 315
EcoRII	CCWGG	2 cut(s)	22, 437
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	1 cut(s)	267
FaiI	YATR	6 cut(s)	94, 181, 265, 481, 494, 506
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	185
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	70, 316, 436
Hin1II	CATG	1 cut(s)	267
HinfI	GANTC	2 cut(s)	209, 409
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	199, 261, 311, 402
Hpy188III	TCNNGA	3 cut(s)	229, 350, 390
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	3 cut(s)	240, 358, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	196, 308
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	333, 425
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	3 cut(s)	245, 372, 418
MalI	GATC	2 cut(s)	335, 427
MboI	GATC	2 cut(s)	333, 425
MboII	GAAGA	2 cut(s)	35, 244
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	2, 100, 158
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	29, 162, 299, 305
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	24, 439
MvaI	CCWGG	2 cut(s)	24, 439
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeII	GATC	2 cut(s)	333, 425
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	267
PasI	CCCWGGG	1 cut(s)	438
PciI	ACATGT	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	209
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	186
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PscI	ACATGT	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	22, 437
PspGI	CCWGG	2 cut(s)	22, 437
PspN4I	GGNNCC	1 cut(s)	316
PspOMI	GGGCCC	1 cut(s)	314
PspPI	GGNCC	3 cut(s)	314, 315, 435
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	333, 425
Sau96I	GGNCC	3 cut(s)	314, 315, 435
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	24, 439
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	9 cut(s)	58, 119, 186, 204, 227, 309, 420, 470, 505
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	2, 100, 158
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	2 cut(s)	22, 437
TaaI	ACNGT	3 cut(s)	240, 358, 372
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	2, 100, 158
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	418
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	2, 158
XceI	RCATGY	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.