Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012795

Physical Location & Seq

Genomic Coordinates Forward (+)

297393 .. 301012

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTCCACCTCCATCACGCTCTCAGCCCTCTCAATCTCACCCTCTACCTCTCAACTACACAGAAACCCTAGCGCTTCTTCTCCGTCCCTTCCTTGCCATCTTCCTCCCTACAACCTATCCACCACTTTTATGGGCAAAAAGCTCTCAATTCGAGTTCCGAATTTAAATCACTTGGCTTCAAAGCATAGGACGGCGGTCGCCACGGTCCTGTTCAGCCTCCCAACAGCGAAACCCGATAGGAATTCTACTGGGAAAAGCCCGAAATGGTCAGCCAGAGCCATAAAGTCGTTTGCTATGGGTGAATTGGAAGCGCGGAAGCTTAAATATCCCAATACTGGGACCGAAGCACTTCTAATGGGGATTTTGGTTGAGGGAACAAGCCTAGCTGCAAAGTTTCTTAGAGCTAATGGAATTACACTTTTCAAGGTTCGAGATGAAACTGTAAATTTACTTGGAAAATCAGACCTGTACTTTTTCAGCCCTGAGCATCCTCCATTGACTGAACCAGCTCAGAGGGCCCTTGACTGGGCCGTTGATCAGAAGCTAAAATCAGGAGAAAATGGGGAAATAACAGTAACTCATCTGCTTCTTGGGATTTGGTCTGAAAAAGAGTCAGCAGGTCACAAGATCTTGGCATCCCTAGGTTTTGATGAAGAGAAAGCTAAAGAGCTTTCCAAATCTATGGACTCAGATTATGTTCCTAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

238

Amino Acids

25.79

Weight (kDa)

9.36

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25370
fragaria_vesca	FvH4_7g00050
malus_domestica	MD00G1055600.v1.1 MD02G1320000.v1.1
prunus_persica	Prupe.2G002100_v2.0.a1
pyrus_communis	pycom07g00100
rosa_chinensis	RchiOBHm_Chr1g0313031 RchiOBHm_Chr1g0313191
rosa_laevigata	RLG00000030817
rosa_multiflora	Rmu_co8509777.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332400
rosa_rugosa	RorugPtG0001300.1
rosa_samantha	Rh1AG000400 Rh1AG001500 Rh1CG003500 Rh1CG006100 Rh1DG001400
rosa_wichuraiana	Rw1G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
AccII	CGCG	1 cut(s)	316
AciI	CCGC	2 cut(s)	197, 316
AcsI	RAATTY	3 cut(s)	163, 244, 448
AfaI	GTAC	1 cut(s)	473
AfeI	AGCGCT	1 cut(s)	76
AfiI	CCNNNNNNNGG	4 cut(s)	338, 339, 528, 529
AgsI	TTSAA	2 cut(s)	183, 427
AluBI	AGCT	9 cut(s)	145, 322, 389, 407, 512, 547, 665, 673, 708
AluI	AGCT	9 cut(s)	145, 322, 389, 407, 512, 547, 665, 673, 708
Aor51HI	AGCGCT	1 cut(s)	76
AoxI	GGCC	2 cut(s)	519, 531
ApaI	GGGCCC	1 cut(s)	523
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	3 cut(s)	163, 244, 448
Asp700I	GAANNNNTTC	1 cut(s)	351
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	2 cut(s)	77, 316
AspS9I	GGNCC	5 cut(s)	208, 342, 519, 520, 531
AsuHPI	GGTGA	2 cut(s)	33, 314
AvaII	GGWCC	2 cut(s)	208, 342
AvrII	CCTAGG	1 cut(s)	643
BaeGI	GKGCMC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	23, 108
BceAI	ACGGC	2 cut(s)	210, 518
BclI	TGATCA	1 cut(s)	538
BfaI	CTAG	4 cut(s)	72, 386, 644, 705
BfoI	RGCGCY	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	611
BglII	AGATCT	1 cut(s)	630
BisI	GCNGC	1 cut(s)	390
BlnI	CCTAGG	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	391
Bme18I	GGWCC	2 cut(s)	208, 342
BmgT120I	GGNCC	5 cut(s)	208, 342, 519, 520, 531
BmiI	GGNNCC	2 cut(s)	343, 521
BmrI	ACTGGG	3 cut(s)	261, 348, 538
BmsI	GCATC	2 cut(s)	499, 647
BmuI	ACTGGG	3 cut(s)	261, 348, 538
BoxI	GACNNNNGTC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	204, 643
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 339, 528, 529
Bse1I	ACTGG	3 cut(s)	256, 343, 533
BseDI	CCNNGG	2 cut(s)	204, 643
BseGI	GGATG	2 cut(s)	490, 638
BseLI	CCNNNNNNNGG	4 cut(s)	338, 339, 528, 529
BseMII	CTCAG	4 cut(s)	39, 477, 527, 705
BseNI	ACTGG	3 cut(s)	256, 343, 533
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	521, 533
BsiEI	CGRYCG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	73, 355
BslI	CCNNNNNNNGG	4 cut(s)	338, 339, 528, 529
BsmFI	GGGAC	2 cut(s)	73, 355
BsnI	GGCC	2 cut(s)	521, 533
Bsp120I	GGGCCC	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	2 cut(s)	538, 630
BspACI	CCGC	2 cut(s)	197, 316
BspANI	GGCC	2 cut(s)	521, 533
BspCNI	CTCAG	4 cut(s)	38, 478, 526, 704
BspFNI	CGCG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	343, 521
BspMI	ACCTGC	1 cut(s)	611
BsrI	ACTGG	3 cut(s)	256, 343, 533
BssECI	CCNNGG	2 cut(s)	204, 643
BssMI	GATC	2 cut(s)	538, 630
BssT1I	CCWWGG	1 cut(s)	643
Bst4CI	ACNGT	3 cut(s)	208, 445, 577
Bst6I	CTCTTC	1 cut(s)	651
BstDEI	CTNAG	5 cut(s)	25, 401, 486, 513, 691
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	2 cut(s)	490, 638
BstFNI	CGCG	1 cut(s)	316
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 316
BstKTI	GATC	2 cut(s)	541, 633
BstMBI	GATC	2 cut(s)	538, 630
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	523
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	2 cut(s)	133, 685
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	521, 533
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	490, 638
BveI	ACCTGC	1 cut(s)	611
CfoI	GCGC	2 cut(s)	77, 316
Cfr13I	GGNCC	5 cut(s)	208, 342, 519, 520, 531
Csp6I	GTAC	1 cut(s)	472
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	5 cut(s)	25, 401, 486, 513, 691
DpnI	GATC	2 cut(s)	540, 632
DpnII	GATC	2 cut(s)	538, 630
DraI	TTTAAA	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	643
Eco24I	GRGCYC	1 cut(s)	523
Eco47I	GGWCC	2 cut(s)	208, 342
Eco47III	AGCGCT	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	519, 520
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	523
ErhI	CCWWGG	1 cut(s)	643
FaiI	YATR	6 cut(s)	134, 189, 284, 299, 686, 699
FaqI	GGGAC	2 cut(s)	73, 355
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	477, 625
FriOI	GRGCYC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	4 cut(s)	72, 386, 644, 705
GlaI	GCGC	2 cut(s)	76, 315
GluI	GCNGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	521, 533
HhaI	GCGC	2 cut(s)	77, 316
Hin6I	GCGC	2 cut(s)	75, 314
HinP1I	GCGC	2 cut(s)	75, 314
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	614, 689
HphI	GGTGA	2 cut(s)	33, 314
Hpy188I	TCNGA	6 cut(s)	162, 466, 516, 543, 607, 694
Hpy188III	TCNNGA	2 cut(s)	434, 555
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	3 cut(s)	208, 445, 577
HpyCH4V	TGCA	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	5 cut(s)	25, 401, 486, 513, 691
HspAI	GCGC	2 cut(s)	75, 314
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	538, 630
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	499, 647
MaeI	CTAG	4 cut(s)	72, 386, 644, 705
MaeIII	GTNAC	2 cut(s)	577, 623
MalI	GATC	2 cut(s)	540, 632
MboI	GATC	2 cut(s)	538, 630
MboII	GAAGA	3 cut(s)	72, 95, 668
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	6 cut(s)	150, 163, 244, 305, 414, 448
MlyI	GAGTC	2 cut(s)	623, 683
MnlI	CCTC	9 cut(s)	22, 41, 55, 61, 117, 230, 367, 504, 510
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	167, 324
MslI	CAYNNNNRTG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	2 cut(s)	538, 630
NlaIV	GGNNCC	2 cut(s)	343, 521
NmuCI	GTSAC	1 cut(s)	623
PdmI	GAANNNNTTC	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	622, 683
PpsI	GAGTC	2 cut(s)	622, 683
PshAI	GACNNNNGTC	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	343, 521
PspOMI	GGGCCC	1 cut(s)	519
PspPI	GGNCC	5 cut(s)	208, 342, 519, 520, 531
PsuI	RGATCY	1 cut(s)	630
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	167, 324
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	538, 630
Sau96I	GGNCC	5 cut(s)	208, 342, 519, 520, 531
SchI	GAGTC	2 cut(s)	623, 683
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	499, 647
SinI	GGWCC	2 cut(s)	208, 342
SmiI	ATTTAAAT	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	6 cut(s)	150, 163, 244, 305, 414, 448
SsiI	CCGC	2 cut(s)	197, 316
SspMI	CTAG	4 cut(s)	72, 386, 644, 705
StyI	CCWWGG	1 cut(s)	643
SwaI	ATTTAAAT	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	208, 445, 577
TaqI	TCGA	2 cut(s)	154, 433
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	6 cut(s)	150, 163, 244, 305, 414, 448
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	2 cut(s)	167, 324
Tru9I	TTAA	2 cut(s)	167, 324
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	453, 669
TspGWI	ACGGA	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	208, 342
XapI	RAATTY	3 cut(s)	163, 244, 448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmaJI	CCTAGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	4 cut(s)	72, 386, 644, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.