Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012795

Physical Location & Seq

Genomic Coordinates Reverse (-)

640577 .. 642811

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGACCTCCGTTTCCATCACCCTGTCAGCTCTCTCAGTCTCTTCCCTTAGAAAGCCCAGCAATTCGACACCCTGCAACCTATCGACCTCGTTCCTCGGCAGAAAGCTCTCCATTGAAATTCCGCATTCAAACAAGTTCGCTTCAAAGCATCCAACTCCGGTCGCCACCGTTCTCTTCAGCCTCCCAACAGGGAAGCCAGAGAGGATTTCTTCTGGGAAAACCTCACAATGGTCGGCCAGAGCCATTAAGTCGTTTGCTATGGGTGAATTGGAAGCAAGGAAGCTCAAGTATCCCAATACTGGCACGGAAGCCCTTCTAATGGGAATTTTAGTCGAGGGAACTAGTATAGCTGCCAAGTTTCTCAGAGCTAATGGAATCACACTTTTCAAGGTTCGAGAAGAAACTGTGAAGTTACTTGGAAAGTCGGACATGTACTTTTTCAGCCCCGAGCATCCTCCATTGACTGAGCCTGCTCAGAGGGCCCTTGACTGGGCTGTTGATCAAAAACTAAAGTCAGGAGACAGTGGGGAAATAACAGTAAGTCATCTGTTACTTGGGATCTGGTCTGAAAAAGAGTCGGCAGGTCACAAGATCTTGGTTTCCCTGGGTTTTGATGATGAGAAAGCAAAAGAGCTTTCTGTATCTATGGACAAGGATTATGTTCTTAGCTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

226

Amino Acids

24.54

Weight (kDa)

9.34

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	80 - 200	7.2e-15	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25370
fragaria_vesca	FvH4_7g00050
malus_domestica	MD00G1055600.v1.1 MD02G1320000.v1.1
prunus_persica	Prupe.2G002100_v2.0.a1
pyrus_communis	pycom07g00100
rosa_chinensis	RchiOBHm_Chr1g0313031 RchiOBHm_Chr1g0313191
rosa_laevigata	RLG00000030817
rosa_multiflora	Rmu_co8509777.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332400
rosa_rugosa	RorugPtG0001300.1
rosa_samantha	Rh1AG000400 Rh1AG001500 Rh1CG003500 Rh1CG006100 Rh1DG001400
rosa_wichuraiana	Rw1G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	572
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	117, 324
AcuI	CTGAAG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	5 cut(s)	228, 299, 319, 489, 490
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	116, 129, 144, 388
AhlI	ACTAGT	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	7 cut(s)	29, 106, 283, 350, 368, 634, 669
AluI	AGCT	7 cut(s)	29, 106, 283, 350, 368, 634, 669
Alw26I	GTCTC	2 cut(s)	43, 513
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	234, 480
ApaI	GGGCCC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	2 cut(s)	117, 324
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	480, 481
AsuHPI	GGTGA	2 cut(s)	10, 275
AvaI	CYCGRG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	43, 513
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	572
BfuI	GTATCC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	591
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	480, 481
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	605
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	157, 460
BmuI	ACTGGG	1 cut(s)	499
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	94, 603, 604
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 299, 319, 489, 490
Bse1I	ACTGG	2 cut(s)	304, 494
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	3 cut(s)	94, 603, 604
BseGI	GGATG	2 cut(s)	148, 451
BseLI	CCNNNNNNNGG	5 cut(s)	228, 299, 319, 489, 490
BseMII	CTCAG	4 cut(s)	48, 376, 456, 488
BseNI	ACTGG	2 cut(s)	304, 494
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	337
BseYI	CCCAGC	1 cut(s)	56
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	236, 482
BsiEI	CGRYCG	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	5 cut(s)	228, 299, 319, 489, 490
BsmAI	GTCTC	2 cut(s)	43, 513
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	236, 482
BsoBI	CYCGRG	1 cut(s)	446
Bsp120I	GGGCCC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	499, 558, 591
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	236, 482
BspCNI	CTCAG	4 cut(s)	47, 375, 457, 487
BspLI	GGNNCC	1 cut(s)	482
BspMI	ACCTGC	1 cut(s)	572
BspPI	GGATC	1 cut(s)	566
BsrI	ACTGG	2 cut(s)	304, 494
BssECI	CCNNGG	3 cut(s)	94, 603, 604
BssMI	GATC	3 cut(s)	499, 558, 591
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	169, 406, 524, 538
Bst6I	CTCTTC	2 cut(s)	46, 179
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	6 cut(s)	34, 47, 362, 465, 474, 665
BstF5I	GGATG	2 cut(s)	148, 451
BstKTI	GATC	3 cut(s)	502, 561, 594
BstMAI	GTCTC	2 cut(s)	43, 513
BstMBI	GATC	3 cut(s)	499, 558, 591
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	2 cut(s)	558, 591
BstYI	RGATCY	2 cut(s)	558, 591
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	236, 482
BtsCI	GGATG	2 cut(s)	148, 451
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	480, 481
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	1 cut(s)	430
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	6 cut(s)	34, 47, 362, 465, 474, 665
DpnI	GATC	3 cut(s)	501, 560, 593
DpnII	GATC	3 cut(s)	499, 558, 591
DraI	TTTAAA	1 cut(s)	673
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	46, 179
EarI	CTCTTC	2 cut(s)	46, 179
Eco24I	GRGCYC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	480, 481
EcoRII	CCWGG	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	484
FaeI	CATG	1 cut(s)	433
FaiI	YATR	5 cut(s)	260, 347, 431, 647, 660
FatI	CATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	135, 438
FriOI	GRGCYC	1 cut(s)	484
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	351
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	236, 482
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	1 cut(s)	433
HinfI	GANTC	2 cut(s)	375, 575
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	10, 275
Hpy188I	TCNGA	4 cut(s)	365, 427, 477, 568
Hpy188III	TCNNGA	2 cut(s)	395, 516
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	4 cut(s)	169, 406, 524, 538
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	6 cut(s)	34, 47, 362, 465, 474, 665
Hsp92II	CATG	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	499, 558, 591
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	157, 460
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	3 cut(s)	411, 549, 584
MalI	GATC	3 cut(s)	501, 560, 593
MboI	GATC	3 cut(s)	499, 558, 591
MboII	GAAGA	4 cut(s)	33, 166, 201, 410
MflI	RGATCY	2 cut(s)	558, 591
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	61, 117, 266, 324
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	176, 405
MnlI	CCTC	9 cut(s)	16, 97, 104, 191, 195, 232, 328, 465, 471
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	246, 672
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	3 cut(s)	499, 558, 591
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	584
NspI	RCATGY	1 cut(s)	433
PasI	CCCWGGG	1 cut(s)	604
PciI	ACATGT	1 cut(s)	429
PctI	GAATGC	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	583
PpsI	GAGTC	1 cut(s)	583
PscI	ACATGT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	482
PspOMI	GGGCCC	1 cut(s)	480
PspPI	GGNCC	2 cut(s)	480, 481
PsuI	RGATCY	2 cut(s)	558, 591
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	246, 672
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	499, 558, 591
Sau96I	GGNCC	2 cut(s)	480, 481
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	605
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	2 cut(s)	157, 460
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	4 cut(s)	61, 117, 266, 324
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	169, 406, 524, 538
TaqI	TCGA	4 cut(s)	65, 83, 333, 394
TasI	AATT	4 cut(s)	61, 117, 266, 324
TatI	WGTACW	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	246, 672
Tru9I	TTAA	2 cut(s)	246, 672
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	584
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	529
XapI	RAATTY	2 cut(s)	117, 324
XceI	RCATGY	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.