AT4G25620

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011979
Physical Location & Seq
Reverse (-)
13067186 .. 13069762
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25620.1

Sequence Viewer

Length: 1350 bp
ATGAGGAGCGTTAATAATAGTAGTGTCGACACCGTGAACGCCGCCGCTTCCGCCATCGTCTCCGCTGAGTCTAGAACACAACCGTCGTCGGTTCAGAAAAAAAGGGGAAGCTGGTGGAGCTTGTACTGGTGTTTTGGATCCAAGAAGAACAATAAAAGGATAGGCCACGCGGTGCTTGTACCCGAACCAGCTGCATCAGGAGCTGCGGTGGCTCCAGTCCAAAACTCTTCGAGCAATTCTACTTCAATATTCATGCCCTTTATAGCTCCTCCTTCATCTCCTGCTTCCTTTCTGCCATCAGGTCCTCCCTCTGCGTCACATACTCCTGATCCTGGTCTACTTTGTTCCCTAACCGTCAATGAACCGCCTTCAGCCTTTACTATTGGACCATACGCTCATGAGACTCAACCTGTTACTCCTCCAGTGTTCTCTGCTTTCACAACGGAACCCTCCACCGCGCCATTCACGCCACCTCCTGAATCACCTTCTTCCCCTGAAGTGCCTTTTGCTCAGTTACTTACATCTTCATTGGAAAGGGCTAGGAGGAACAGTGGTGGTGGAATGAATCAGAAGTTTTCAGCTGCACACTACGAGTTTAAGTCTTGTCAAGTGTATCCTGGAAGTCCAGGTGGTAATCTAATCTCTCCTGGTTCAGGTACATCTTCTCCTTACCCAGGGAAATGCTCCATCATCGAGTTTCGTATCGGCGAACCTCCAAAGTTTCTTGGTTTTGAGCACTTCACAGCGCGTAAATGGGGATCAAGATTCGGTTCTGGATCCATCACACCTGCTGGACAAGGTTCAAGGTTGGGTTCAGGTGCTTTGACTCCTGATGGCTCAAAGCTAACTTCTGGTGTAGTGACACCAAATGGTGCAGAGACTGTTATAAGAATGAGTTATGGGAATCTCACACCACTTGAAGGCAGTCTTTTGGATAGTCAGATCTCTGAGGTTGCGTCTTTAGCCAATTCGGACCACGGGTCGTCAAGGCATAATGATGAAGCTCTCGTGGTTCCTCACAGAGTTTCTTTCGAGTTGACTGGTGAAGACGTTGCACGGTGTCTTGCAAGCAAGCTAAACCGTTCCGGTTCACATGAAAAAGCAAGCGGCGAACATTTAAGACCAAACTGTTGTAAAACGTCGGGAGAAACAGAGAGCGAACAGAGTCAGAAGCTAAGATCGTTTTCTACAGGCTCTAACAAAGAATTCAAGTTTGATAGCACCAATGAAGAGATGATAGAGAAAATTCGATCGGAGTGGTGGGCGAATGAGAAGGTCGCCGGAAAAGGTGATCACAGTCCAAGAAACAGTTGGACTTTCTTTCCAGTCTTACGCTCTGGACATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

47.72

Weight (kDa)

8.41

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25620 AT5G52430
fragaria_vesca FvH4_7g29970 FvH4_7g29970 FvH4_7g29970
malus_domestica MD01G1205800.v1.1
prunus_persica Prupe.2G298300_v2.0.a1
pyrus_communis pycom01g21520 pycom07g25120
rosa_chinensis RchiOBHm_Chr1g0377921
rosa_laevigata RLG00000026486
rosa_multiflora Rmu_sc0004824.1_g000016
rosa_roxburghii Rroxscaffold_4G00280940
rosa_rugosa Rorug01G0405400
rosa_samantha Rh1AG426000 Rh1BG383100 Rh1CG396900 Rh1DG414100
rosa_wichuraiana Rw1G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AarI CACCTGC 1 cut(s) 796
Acc36I ACCTGC 1 cut(s) 796
AccI GTMKAC 2 cut(s) 27, 337
AccII CGCG 3 cut(s) 170, 458, 748
AciI CCGC 9 cut(s) 42, 45, 51, 63, 170, 206, 365, 456, 1107
AclWI GGATC 6 cut(s) 132, 145, 323, 766, 771, 784
AcsI RAATTY 2 cut(s) 1205, 1245
AcuI CTGAAG 2 cut(s) 354, 516
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 3 cut(s) 125, 180, 658
AfiI CCNNNNNNNGG 4 cut(s) 332, 653, 674, 920
AgsI TTSAA 4 cut(s) 246, 804, 920, 1210
AhdI GACNNNNNGTC 1 cut(s) 979
AjnI CCWGG 5 cut(s) 331, 616, 625, 646, 673
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 3 cut(s) 64, 395, 872
AlwI GGATC 6 cut(s) 132, 145, 323, 766, 771, 784
AlwNI CAGNNNCTG 2 cut(s) 203, 881
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 191, 203, 581
ApoI RAATTY 2 cut(s) 1205, 1245
AspLEI GCGC 2 cut(s) 460, 748
AspS9I GGNCC 3 cut(s) 302, 386, 973
AsuHPI GGTGA 3 cut(s) 474, 1055, 1301
AvaII GGWCC 3 cut(s) 302, 386, 973
BamHI GGATCC 2 cut(s) 137, 776
BauI CACGAG 1 cut(s) 1007
BbsI GAAGAC 1 cut(s) 1053
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 3 cut(s) 178, 190, 568
BccI CCATC 5 cut(s) 62, 304, 695, 788, 827
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 5 cut(s) 333, 618, 627, 648, 675
BciVI GTATCC 1 cut(s) 624
BclI TGATCA 1 cut(s) 1291
BcoDI GTCTC 3 cut(s) 64, 395, 872
BfaI CTAG 2 cut(s) 72, 540
BfmI CTRYAG 1 cut(s) 1188
BfuAI ACCTGC 1 cut(s) 796
BfuI GTATCC 1 cut(s) 624
BglII AGATCT 1 cut(s) 942
BisI GCNGC 6 cut(s) 42, 45, 192, 204, 582, 1108
BlsI GCNGC 6 cut(s) 43, 46, 193, 205, 583, 1109
Bme1390I CCNGG 5 cut(s) 333, 618, 627, 648, 675
Bme18I GGWCC 3 cut(s) 302, 386, 973
BmeRI GACNNNNNGTC 1 cut(s) 979
BmgT120I GGNCC 3 cut(s) 302, 386, 973
BmiI GGNNCC 5 cut(s) 139, 213, 447, 778, 1014
BmrFI CCNGG 5 cut(s) 333, 618, 627, 648, 675
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 1053
BpmI CTGGAG 2 cut(s) 198, 405
BsaJI CCNNGG 3 cut(s) 673, 674, 976
BsaWI WCCGGW 1 cut(s) 1085
BsaXI ACNNNNNCTCC 8 cut(s) 192, 222, 457, 487, 535, 565, 649, 679
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 653, 674, 920
Bse1I ACTGG 5 cut(s) 131, 215, 422, 1045, 1325
BseBI CCWGG 5 cut(s) 333, 618, 627, 648, 675
BseDI CCNNGG 3 cut(s) 673, 674, 976
BseLI CCNNNNNNNGG 4 cut(s) 332, 653, 674, 920
BseMII CTCAG 3 cut(s) 57, 524, 939
BseNI ACTGG 5 cut(s) 131, 215, 422, 1045, 1325
BseRI GAGGAG 3 cut(s) 19, 258, 408
BseXI GCAGC 3 cut(s) 178, 190, 568
BsgI GTGCAG 2 cut(s) 567, 894
Bsh1236I CGCG 3 cut(s) 170, 458, 748
Bsh1285I CGRYCG 1 cut(s) 1253
BshFI GGCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 1253
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 2 cut(s) 1086, 1281
BslI CCNNNNNNNGG 4 cut(s) 332, 653, 674, 920
BsmAI GTCTC 3 cut(s) 64, 395, 872
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
BspACI CCGC 9 cut(s) 42, 45, 51, 63, 170, 206, 365, 456, 1107
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 58, 523, 940
BspFNI CGCG 3 cut(s) 170, 458, 748
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 5 cut(s) 139, 213, 447, 778, 1014
BspMI ACCTGC 1 cut(s) 796
BspPI GGATC 6 cut(s) 132, 145, 323, 766, 771, 784
BsrI ACTGG 5 cut(s) 131, 215, 422, 1045, 1325
BssECI CCNNGG 3 cut(s) 673, 674, 976
BssMI GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
BssSI CACGAG 1 cut(s) 1007
Bst2BI CACGAG 1 cut(s) 1007
Bst2UI CCWGG 5 cut(s) 333, 618, 627, 648, 675
Bst6I CTCTTC 2 cut(s) 232, 1224
BstC8I GCNNGC 3 cut(s) 1069, 1073, 1105
BstDEI CTNAG 5 cut(s) 66, 510, 948, 1175, 1347
BstDSI CCRYGG 1 cut(s) 976
BstENI CCTNNNNNAGG 2 cut(s) 651, 672
BstFNI CGCG 3 cut(s) 170, 458, 748
BstHHI GCGC 2 cut(s) 460, 748
BstKTI GATC 8 cut(s) 140, 331, 761, 779, 945, 1181, 1253, 1294
BstMAI GTCTC 3 cut(s) 64, 395, 872
BstMBI GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
BstMCI CGRYCG 1 cut(s) 1253
BstMWI GCNNNNNNNGC 6 cut(s) 50, 117, 200, 209, 466, 962
BstNI CCWGG 5 cut(s) 333, 618, 627, 648, 675
BstSCI CCNGG 5 cut(s) 331, 616, 625, 646, 673
BstSFI CTRYAG 1 cut(s) 1188
BstUI CGCG 3 cut(s) 170, 458, 748
BstV1I GCAGC 3 cut(s) 178, 190, 568
BstV2I GAAGAC 1 cut(s) 1053
BstX2I RGATCY 3 cut(s) 137, 776, 942
BstYI RGATCY 3 cut(s) 137, 776, 942
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 976
BtsIMutI CAGTG 2 cut(s) 429, 556
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 3 cut(s) 1069, 1073, 1105
CaiI CAGNNNCTG 2 cut(s) 203, 881
CciI TCATGA 1 cut(s) 397
CfoI GCGC 2 cut(s) 460, 748
Cfr13I GGNCC 3 cut(s) 302, 386, 973
CseI GACGC 2 cut(s) 303, 945
Csp6I GTAC 3 cut(s) 124, 179, 657
CviAII CATG 3 cut(s) 253, 398, 1094
CviQI GTAC 3 cut(s) 124, 179, 657
DdeI CTNAG 5 cut(s) 66, 510, 948, 1175, 1347
DpnI GATC 8 cut(s) 139, 330, 760, 778, 944, 1180, 1252, 1293
DpnII GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
DraIII CACNNNGTG 1 cut(s) 172
DriI GACNNNNNGTC 1 cut(s) 979
Eam1104I CTCTTC 2 cut(s) 232, 1224
Eam1105I GACNNNNNGTC 1 cut(s) 979
EarI CTCTTC 2 cut(s) 232, 1224
EciI GGCGGA 1 cut(s) 40
Eco47I GGWCC 3 cut(s) 302, 386, 973
Eco57I CTGAAG 2 cut(s) 354, 516
EcoNI CCTNNNNNAGG 2 cut(s) 651, 672
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1205
EcoRII CCWGG 5 cut(s) 331, 616, 625, 646, 673
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 3 cut(s) 256, 401, 1097
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FatI CATG 3 cut(s) 252, 397, 1093
FbaI TGATCA 1 cut(s) 1291
FblI GTMKAC 2 cut(s) 27, 337
Fnu4HI GCNGC 6 cut(s) 42, 45, 192, 204, 582, 1108
Fsp4HI GCNGC 6 cut(s) 42, 45, 192, 204, 582, 1108
FspBI CTAG 2 cut(s) 72, 540
GlaI GCGC 2 cut(s) 459, 747
GluI GCNGC 6 cut(s) 42, 45, 192, 204, 582, 1108
GsuI CTGGAG 2 cut(s) 198, 405
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 1086, 1281
HgaI GACGC 2 cut(s) 303, 945
HhaI GCGC 2 cut(s) 460, 748
Hin1II CATG 3 cut(s) 256, 401, 1097
Hin6I GCGC 2 cut(s) 458, 746
HinP1I GCGC 2 cut(s) 458, 746
HincII GTYRAC 2 cut(s) 28, 1038
HindII GTYRAC 2 cut(s) 28, 1038
HinfI GANTC 8 cut(s) 68, 403, 479, 565, 765, 826, 904, 1165
HpaII CCGG 2 cut(s) 1086, 1281
HphI GGTGA 3 cut(s) 474, 1055, 1301
Hpy166II GTNNAC 5 cut(s) 28, 37, 338, 1038, 1091
Hpy188I TCNGA 7 cut(s) 96, 570, 942, 949, 973, 1170, 1255
Hpy8I GTNNAC 5 cut(s) 28, 37, 338, 1038, 1091
Hpy99I CGWCG 3 cut(s) 88, 91, 1144
HpyAV CCTTC 5 cut(s) 282, 378, 495, 914, 1267
HpyCH4IV ACGT 2 cut(s) 1050, 1139
HpyCH4V TGCA 5 cut(s) 194, 584, 875, 1055, 1067
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 117, 200, 209, 466, 962
HpyF3I CTNAG 5 cut(s) 66, 510, 948, 1175, 1347
HpySE526I ACGT 2 cut(s) 1050, 1139
Hsp92II CATG 3 cut(s) 256, 401, 1097
HspAI GCGC 2 cut(s) 458, 746
Ksp22I TGATCA 1 cut(s) 1291
Kzo9I GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
LmnI GCTCC 6 cut(s) 6, 117, 200, 217, 271, 689
Lsp1109I GCAGC 3 cut(s) 178, 190, 568
LweI GCATC 1 cut(s) 203
MaeI CTAG 2 cut(s) 72, 540
MaeII ACGT 2 cut(s) 1050, 1139
MaeIII GTNAC 4 cut(s) 315, 412, 513, 859
MalI GATC 8 cut(s) 139, 330, 760, 778, 944, 1180, 1252, 1293
MboI GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
MboII GAAGA 7 cut(s) 157, 219, 480, 516, 654, 1058, 1241
MflI RGATCY 3 cut(s) 137, 776, 942
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 4 cut(s) 235, 967, 1205, 1245
MlyI GAGTC 4 cut(s) 77, 397, 820, 1174
MmeI TCCRAC 1 cut(s) 1292
MseI TTAA 3 cut(s) 12, 597, 1118
MslI CAYNNNNRTG 1 cut(s) 996
MspA1I CMGCKG 3 cut(s) 65, 191, 581
MspI CCGG 2 cut(s) 1086, 1281
MspR9I CCNGG 5 cut(s) 333, 618, 627, 648, 675
MvaI CCWGG 5 cut(s) 333, 618, 627, 648, 675
MvnI CGCG 3 cut(s) 170, 458, 748
MwoI GCNNNNNNNGC 6 cut(s) 50, 117, 200, 209, 466, 962
NdeII GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
NlaIII CATG 3 cut(s) 256, 401, 1097
NlaIV GGNNCC 5 cut(s) 139, 213, 447, 778, 1014
NmuCI GTSAC 2 cut(s) 315, 859
PagI TCATGA 1 cut(s) 397
PaqCI CACCTGC 1 cut(s) 796
PasI CCCWGGG 1 cut(s) 674
PfeI GAWTC 4 cut(s) 479, 565, 765, 904
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 6 cut(s) 43, 46, 193, 205, 583, 1109
Ple19I CGATCG 1 cut(s) 1253
PleI GAGTC 4 cut(s) 76, 397, 820, 1173
PpsI GAGTC 4 cut(s) 76, 397, 820, 1173
PpuMI RGGWCCY 1 cut(s) 302
PsiI TTATAA 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 5 cut(s) 331, 616, 625, 646, 673
PspGI CCWGG 5 cut(s) 331, 616, 625, 646, 673
PspN4I GGNNCC 5 cut(s) 139, 213, 447, 778, 1014
PspPI GGNCC 3 cut(s) 302, 386, 973
PspPPI RGGWCCY 1 cut(s) 302
PstNI CAGNNNCTG 2 cut(s) 203, 881
PsuI RGATCY 3 cut(s) 137, 776, 942
PvuI CGATCG 1 cut(s) 1253
PvuII CAGCTG 2 cut(s) 191, 581
RsaI GTAC 3 cut(s) 125, 180, 658
RsaNI GTAC 3 cut(s) 124, 179, 657
RseI CAYNNNNRTG 1 cut(s) 996
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 12, 597, 1118
SatI GCNGC 6 cut(s) 42, 45, 192, 204, 582, 1108
Sau3AI GATC 8 cut(s) 137, 328, 758, 776, 942, 1178, 1250, 1291
Sau96I GGNCC 3 cut(s) 302, 386, 973
SchI GAGTC 4 cut(s) 77, 397, 820, 1174
ScrFI CCNGG 5 cut(s) 333, 618, 627, 648, 675
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 1 cut(s) 203
SfcI CTRYAG 1 cut(s) 1188
SinI GGWCC 3 cut(s) 302, 386, 973
SmiMI CAYNNNNRTG 1 cut(s) 996
Sse9I AATT 4 cut(s) 235, 967, 1205, 1245
SsiI CCGC 9 cut(s) 42, 45, 51, 63, 170, 206, 365, 456, 1107
SspI AATATT 1 cut(s) 249
SspMI CTAG 2 cut(s) 72, 540
StyD4I CCNGG 5 cut(s) 331, 616, 625, 646, 673
TaiI ACGT 2 cut(s) 1053, 1142
TaqI TCGA 5 cut(s) 27, 230, 693, 1032, 1249
TasI AATT 4 cut(s) 235, 967, 1205, 1245
TatI WGTACW 1 cut(s) 123
TauI GCSGC 3 cut(s) 44, 47, 1110
TfiI GAWTC 4 cut(s) 479, 565, 765, 904
Tru1I TTAA 3 cut(s) 12, 597, 1118
Tru9I TTAA 3 cut(s) 12, 597, 1118
TscAI CASTG 2 cut(s) 429, 556
TseFI GTSAC 2 cut(s) 315, 859
TseI GCWGC 3 cut(s) 191, 203, 581
Tsp45I GTSAC 2 cut(s) 315, 859
TspDTI ATGAA 8 cut(s) 241, 264, 375, 516, 578, 1014, 1110, 1242
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 429, 556
VpaK11BI GGWCC 3 cut(s) 302, 386, 973
XagI CCTNNNNNAGG 2 cut(s) 651, 672
XapI RAATTY 2 cut(s) 1205, 1245
XbaI TCTAGA 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 1308
XmiI GTMKAC 2 cut(s) 27, 337
XspI CTAG 2 cut(s) 72, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.