Rh1BG383100

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011979
Physical Location & Seq
Reverse (-)
51162393 .. 51165527
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG383100.1

Sequence Viewer

Length: 1158 bp
ATGTCATTTGCTTCCCTTTCTGCCAATGCCTACTCTCCAGGTGGAGCTCAGTCCATGTTCACCATTGGCCCTTATGCATATGAGACCCAATTAGTCTCACCACCTGTGTTCTCCACCTTCAACACTGAACCATCTACTGCTCCATATACTCCCCCTCCCGAATCTGTGCAACTGACTACACCTTCATCCCCTGAAGTGCCATTTGCTCAGCTTCTGACATCTTCATTGGACCGAAGTCGCAGACACAGTGGTGGCAGTCAGAAGTTTGCATTGTCCTATGGTGAATTCCAGCCGTACCAACAATATCCAGGAAGCCCAGGTGGCCAACTCAGATCACCGGGATCAGCAATATCAAATTCTGGCACATCTTCTCCTTTTCCTGACAGATATCCGGGGCTTGACTTTCGCATGGGGGAAGCTCCCAAACTCATGGGGTTTGAACATTTTACCACTCATAAATGGGGTTCAAGGCTAGGTTCTGGATCATTAACACCAGATGGTGCGGGGTTGGGTTCCAGGCTAGGTTCTGGGACACTAACGCCAGACGGCTATGAGCTAGGTTCAAGGTTAGCTTCTGGATCTATGACCCCTAATGGTGTGGGGATTGGTTCTAGGCTGGGTTCTGGATGTTTGACACCCGATGGTACGGGGCCTGCGTCTAGAGACACTGTCCTTCCGGAGAACCAGATATCTGAGGTGGCATCCCTGGGCAACTCTGAGAGTGGATGTCAAAATGATGGAAATGTATTTGATCACAGGGTGTCATTTGAATTGACTTGTGAGGATGTTGCATGCTGTCTTGCAAATAAATCAGGTGCATCATTTAAAACTGCATCAGAATCGTCAAAGGATATGTCAGCTGAAATCCCAAATGAAAGACATGGGTCATCAATAACAAATAAGTCGAGTGCTGGGGACAGTTTCAGTAAAATTCCTGAAAATTGTTTGGGAGAAGGGGAAGATCATTGTTATCGGAAGCATAGATCAATCACGCTTGGGTCAACGAAGGACTTCAATTTTGACAACACAAAAGCTGATGTTCCCAATAAGTCGGACATTGGCTCAGAGTGGTGGGCAAACAAAAACGTTGCTGCTAAGGAATCGAAACCTGGCAATGACTGGACCTTTTTTCCAATTCTACAAGCTGGAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

385

Amino Acids

40.71

Weight (kDa)

5.45

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25620 AT5G52430
fragaria_vesca FvH4_7g29970 FvH4_7g29970 FvH4_7g29970
malus_domestica MD01G1205800.v1.1
prunus_persica Prupe.2G298300_v2.0.a1
pyrus_communis pycom01g21520 pycom07g25120
rosa_chinensis RchiOBHm_Chr1g0377921
rosa_laevigata RLG00000026486
rosa_multiflora Rmu_sc0004824.1_g000016
rosa_roxburghii Rroxscaffold_4G00280940
rosa_rugosa Rorug01G0405400
rosa_samantha Rh1AG426000 Rh1BG383100 Rh1CG396900 Rh1DG414100
rosa_wichuraiana Rw1G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 1 cut(s) 503
AclI AACGTT 1 cut(s) 1086
AclWI GGATC 3 cut(s) 349, 490, 586
AcoI YGGCCR 1 cut(s) 322
AcsI RAATTY 3 cut(s) 284, 355, 930
AcuI CTGAAG 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 760
AfaI GTAC 2 cut(s) 296, 646
AgsI TTSAA 6 cut(s) 121, 440, 468, 564, 770, 1015
AjnI CCWGG 6 cut(s) 37, 307, 316, 515, 705, 1108
AleI CACNNNNGTG 1 cut(s) 249
AluBI AGCT 8 cut(s) 47, 211, 419, 556, 572, 860, 1034, 1145
AluI AGCT 8 cut(s) 47, 211, 419, 556, 572, 860, 1034, 1145
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 3 cut(s) 77, 100, 657
AlwI GGATC 3 cut(s) 349, 490, 586
AlwNI CAGNNNCTG 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 3 cut(s) 67, 322, 650
ApeKI GCWGC 1 cut(s) 1091
ApoI RAATTY 3 cut(s) 284, 355, 930
ArsI GACNNNNNNTTYG 4 cut(s) 839, 871, 1001, 1033
Asp700I GAANNNNTTC 1 cut(s) 1010
AspS9I GGNCC 4 cut(s) 68, 229, 650, 1122
AsuC2I CCSGG 2 cut(s) 339, 393
AsuHPI GGTGA 4 cut(s) 52, 90, 293, 327
AvaII GGWCC 2 cut(s) 229, 1122
BalI TGGCCA 1 cut(s) 324
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 1078
BccI CCATC 4 cut(s) 139, 491, 635, 731
BceAI ACGGC 2 cut(s) 277, 562
BcgI CGANNNNNNTGC 2 cut(s) 822, 856
BciT130I CCWGG 6 cut(s) 39, 309, 318, 517, 707, 1110
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 2 cut(s) 339, 393
BcoDI GTCTC 3 cut(s) 77, 100, 657
BfaI CTAG 5 cut(s) 473, 521, 557, 612, 660
BglI GCCNNNNNGGC 1 cut(s) 321
BisI GCNGC 1 cut(s) 1092
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 1093
Bme1390I CCNGG 8 cut(s) 39, 309, 318, 339, 393, 517, 707, 1110
Bme18I GGWCC 2 cut(s) 229, 1122
BmgT120I GGNCC 4 cut(s) 68, 229, 650, 1122
BmiI GGNNCC 2 cut(s) 514, 651
BmrFI CCNGG 8 cut(s) 39, 309, 318, 339, 393, 517, 707, 1110
BmsI GCATC 3 cut(s) 710, 827, 842
BoxI GACNNNNGTC 2 cut(s) 234, 883
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 1095
Bpu1102I GCTNAGC 1 cut(s) 207
BpuMI CCSGG 2 cut(s) 339, 393
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 316, 392, 705, 706
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 355, 385
Bse1I ACTGG 1 cut(s) 1124
Bse3DI GCAATG 1 cut(s) 1120
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 6 cut(s) 39, 309, 318, 517, 707, 1110
BseDI CCNNGG 4 cut(s) 316, 392, 705, 706
BseGI GGATG 5 cut(s) 185, 632, 701, 731, 790
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 6 cut(s) 62, 221, 343, 684, 708, 1077
BseNI ACTGG 1 cut(s) 1124
BseXI GCAGC 1 cut(s) 1078
BseYI CCCAGC 2 cut(s) 616, 911
BshFI GGCC 3 cut(s) 69, 324, 652
BsiHKAI GWGCWC 1 cut(s) 49
BsiSI CCGG 3 cut(s) 338, 392, 677
BslFI GGGAC 2 cut(s) 544, 929
BsmAI GTCTC 3 cut(s) 77, 100, 657
BsmFI GGGAC 2 cut(s) 544, 929
BsnI GGCC 3 cut(s) 69, 324, 652
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 49
Bsp13I TCCGGA 1 cut(s) 676
Bsp143I GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 1 cut(s) 503
BspANI GGCC 3 cut(s) 69, 324, 652
BspCNI CTCAG 6 cut(s) 61, 220, 342, 685, 709, 1076
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 514, 651
BspPI GGATC 3 cut(s) 349, 490, 586
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 1120
BsrI ACTGG 1 cut(s) 1124
BssECI CCNNGG 4 cut(s) 316, 392, 705, 706
BssMI GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
Bst2UI CCWGG 6 cut(s) 39, 309, 318, 517, 707, 1110
Bst4CI ACNGT 3 cut(s) 248, 670, 920
BstC8I GCNNGC 2 cut(s) 654, 793
BstDEI CTNAG 7 cut(s) 48, 207, 329, 693, 717, 1063, 1095
BstF5I GGATG 5 cut(s) 185, 632, 701, 731, 790
BstKTI GATC 7 cut(s) 335, 344, 485, 581, 754, 964, 986
BstMAI GTCTC 3 cut(s) 77, 100, 657
BstMBI GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
BstMWI GCNNNNNNNGC 1 cut(s) 321
BstNI CCWGG 6 cut(s) 39, 309, 318, 517, 707, 1110
BstNSI RCATGY 1 cut(s) 795
BstPAI GACNNNNGTC 2 cut(s) 234, 883
BstSCI CCNGG 8 cut(s) 37, 307, 316, 337, 391, 515, 705, 1108
BstV1I GCAGC 1 cut(s) 1078
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 578
BsuRI GGCC 3 cut(s) 69, 324, 652
BtsCI GGATG 5 cut(s) 185, 632, 701, 731, 790
BtsIMutI CAGTG 3 cut(s) 123, 253, 666
Cac8I GCNNGC 2 cut(s) 654, 793
CaiI CAGNNNCTG 1 cut(s) 214
Cfr13I GGNCC 4 cut(s) 68, 229, 650, 1122
CseI GACGC 1 cut(s) 645
Csp6I GTAC 2 cut(s) 295, 645
CviAII CATG 5 cut(s) 55, 409, 430, 792, 881
CviQI GTAC 2 cut(s) 295, 645
DdeI CTNAG 7 cut(s) 48, 207, 329, 693, 717, 1063, 1095
DpnI GATC 7 cut(s) 334, 343, 484, 580, 753, 963, 985
DpnII GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
DraI TTTAAA 1 cut(s) 826
DraIII CACNNNGTG 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 322
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 2 cut(s) 389, 690
Eco47I GGWCC 2 cut(s) 229, 1122
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 6 cut(s) 37, 307, 316, 515, 705, 1108
EcoRV GATATC 2 cut(s) 389, 690
EcoT22I ATGCAT 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 5 cut(s) 58, 412, 433, 795, 884
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 2 cut(s) 544, 929
FatI CATG 5 cut(s) 54, 408, 429, 791, 880
FauI CCCGC 1 cut(s) 496
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 1 cut(s) 1092
FokI GGATG 5 cut(s) 172, 639, 688, 738, 797
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 1092
FspBI CTAG 5 cut(s) 473, 521, 557, 612, 660
GluI GCNGC 1 cut(s) 1092
GsaI CCCAGC 2 cut(s) 620, 915
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 3 cut(s) 69, 324, 652
HapII CCGG 3 cut(s) 338, 392, 677
HgaI GACGC 1 cut(s) 645
Hin1II CATG 5 cut(s) 58, 412, 433, 795, 884
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HinfI GANTC 3 cut(s) 161, 839, 1100
HpaII CCGG 3 cut(s) 338, 392, 677
HphI GGTGA 4 cut(s) 52, 90, 293, 327
Hpy166II GTNNAC 2 cut(s) 60, 1002
Hpy188I TCNGA 9 cut(s) 216, 261, 332, 694, 718, 838, 975, 1054, 1066
Hpy188III TCNNGA 8 cut(s) 158, 380, 480, 576, 624, 660, 677, 935
Hpy8I GTNNAC 2 cut(s) 60, 1002
HpyAV CCTTC 5 cut(s) 127, 192, 683, 947, 1000
HpyCH4III ACNGT 3 cut(s) 248, 670, 920
HpyCH4IV ACGT 1 cut(s) 1086
HpyCH4V TGCA 7 cut(s) 77, 169, 269, 791, 803, 818, 833
HpyF10VI GCNNNNNNNGC 1 cut(s) 321
HpyF3I CTNAG 7 cut(s) 48, 207, 329, 693, 717, 1063, 1095
HpySE526I ACGT 1 cut(s) 1086
Hsp92II CATG 5 cut(s) 58, 412, 433, 795, 884
Kpn2I TCCGGA 1 cut(s) 676
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
LmnI GCTCC 3 cut(s) 44, 145, 424
Lsp1109I GCAGC 1 cut(s) 1078
LweI GCATC 3 cut(s) 710, 827, 842
MaeI CTAG 5 cut(s) 473, 521, 557, 612, 660
MaeII ACGT 1 cut(s) 1086
MalI GATC 7 cut(s) 334, 343, 484, 580, 753, 963, 985
MboI GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
MboII GAAGA 3 cut(s) 213, 360, 971
MflI RGATCY 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 8 cut(s) 89, 284, 355, 770, 930, 940, 1015, 1134
MluNI TGGCCA 1 cut(s) 324
MmeI TCCRAC 1 cut(s) 1032
MnlI CCTC 3 cut(s) 165, 688, 775
Mox20I TGGCCA 1 cut(s) 324
Mph1103I ATGCAT 1 cut(s) 79
MroI TCCGGA 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 1010
MscI TGGCCA 1 cut(s) 324
MseI TTAA 2 cut(s) 488, 825
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 860
MspI CCGG 3 cut(s) 338, 392, 677
MspR9I CCNGG 8 cut(s) 39, 309, 318, 339, 393, 517, 707, 1110
MvaI CCWGG 6 cut(s) 39, 309, 318, 517, 707, 1110
MwoI GCNNNNNNNGC 1 cut(s) 321
NciI CCSGG 2 cut(s) 339, 393
NdeI CATATG 1 cut(s) 79
NdeII GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
NlaIII CATG 5 cut(s) 58, 412, 433, 795, 884
NlaIV GGNNCC 2 cut(s) 514, 651
NsiI ATGCAT 1 cut(s) 79
NspI RCATGY 1 cut(s) 795
OliI CACNNNNGTG 1 cut(s) 249
PaeI GCATGC 1 cut(s) 795
PasI CCCWGGG 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 1010
PfeI GAWTC 3 cut(s) 161, 839, 1100
PflFI GACNNNGTC 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 1093
PshAI GACNNNNGTC 2 cut(s) 234, 883
Psp124BI GAGCTC 1 cut(s) 49
Psp1406I AACGTT 1 cut(s) 1086
Psp6I CCWGG 6 cut(s) 37, 307, 316, 515, 705, 1108
PspFI CCCAGC 2 cut(s) 616, 911
PspGI CCWGG 6 cut(s) 37, 307, 316, 515, 705, 1108
PspN4I GGNNCC 2 cut(s) 514, 651
PspPI GGNCC 4 cut(s) 68, 229, 650, 1122
PstNI CAGNNNCTG 1 cut(s) 214
PsuI RGATCY 1 cut(s) 578
PsyI GACNNNGTC 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 860
RsaI GTAC 2 cut(s) 296, 646
RsaNI GTAC 2 cut(s) 295, 645
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 488, 825
SatI GCNGC 1 cut(s) 1092
Sau3AI GATC 7 cut(s) 332, 341, 482, 578, 751, 961, 983
Sau96I GGNCC 4 cut(s) 68, 229, 650, 1122
ScrFI CCNGG 8 cut(s) 39, 309, 318, 339, 393, 517, 707, 1110
SduI GDGCHC 1 cut(s) 49
SfaNI GCATC 3 cut(s) 710, 827, 842
SinI GGWCC 2 cut(s) 229, 1122
SmiMI CAYNNNNRTG 1 cut(s) 249
SphI GCATGC 1 cut(s) 795
Sse9I AATT 8 cut(s) 89, 284, 355, 770, 930, 940, 1015, 1134
SsiI CCGC 1 cut(s) 503
SspMI CTAG 5 cut(s) 473, 521, 557, 612, 660
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 8 cut(s) 37, 307, 316, 337, 391, 515, 705, 1108
TaaI ACNGT 3 cut(s) 248, 670, 920
TaiI ACGT 1 cut(s) 1089
TaqI TCGA 2 cut(s) 905, 1103
TaqII GACCGA 1 cut(s) 246
TasI AATT 8 cut(s) 89, 284, 355, 770, 930, 940, 1015, 1134
TfiI GAWTC 3 cut(s) 161, 839, 1100
Tru1I TTAA 2 cut(s) 488, 825
Tru9I TTAA 2 cut(s) 488, 825
TscAI CASTG 3 cut(s) 130, 253, 673
TseI GCWGC 1 cut(s) 1091
TspDTI ATGAA 3 cut(s) 174, 213, 888
TspRI CASTG 3 cut(s) 130, 253, 673
Tth111I GACNNNGTC 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 229, 1122
XapI RAATTY 3 cut(s) 284, 355, 930
XbaI TCTAGA 1 cut(s) 659
XceI RCATGY 1 cut(s) 795
XmnI GAANNNNTTC 1 cut(s) 1010
XspI CTAG 5 cut(s) 473, 521, 557, 612, 660
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.