pycom01g21520

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011979
Physical Location & Seq
Reverse (-)
19517843 .. 19519567
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g21520.2

Sequence Viewer

Length: 726 bp
ATGAATAGCAGCGTTGACACTATCAACGCCGCCGCCACCGCCATCGTCTCCGCCGAAGCTCGAGCCCAACCCACGACCGTCTCTAAAAGAAGATGGGGAAGCTGCTGGAGCCTATATTGGTGCTTCGGGTCACATAAAAATAACAAGCGAATTGGTCATGCTGTCCTCGTTCCCGAGCCTGTAGTGCCAGGAGCTGCAGTTTCTACCATTGGTAACCAAACAACCTCCACCACAATTGTATTACCATTCATTGCCCCTCCATCTTCTCCTGCATCTTTCCTCCCATCCGATCCACCATCCGCTACCCAATCACCTGCTGGATATCTGTCCCTCACTTCCCTTTCTGCCAATGCCTACTCTTCGAGTGAACCTGCATCCATGTTTTCCATAGGCCCTTATGCATATGAGACACAGTTAGTGTCACCACCTGTATTCTCTACATTCAACACTGAACCATCTACTGCTCCATTCACTCCCCCTCCTGAATCCGTTCAGCTGACTACACCTTCATCCCCTGAAGTTCCATTTGCTCAACTTCTGTCGTCTTCACTGGACCGACAACGTAGAAATAGTAGTAACATCCAGAAGTTTCCACTGTCCCAATACGAATACCAGCCTTACCAACAATATCCAGGAAGTCCCGGCGGTCATCTCATATCACCTGGATCGAGCAATATCAAATTCTGGAACATCTTCTCCTTTTCCGGACAGACACCCTATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

25.77

Weight (kDa)

7.77

Isoelectric Point (pI)

78.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25620 AT5G52430
fragaria_vesca FvH4_7g29970 FvH4_7g29970 FvH4_7g29970
malus_domestica MD01G1205800.v1.1
prunus_persica Prupe.2G298300_v2.0.a1
pyrus_communis pycom01g21520 pycom07g25120
rosa_chinensis RchiOBHm_Chr1g0377921
rosa_laevigata RLG00000026486
rosa_multiflora Rmu_sc0004824.1_g000016
rosa_roxburghii Rroxscaffold_4G00280940
rosa_rugosa Rorug01G0405400
rosa_samantha Rh1AG426000 Rh1BG383100 Rh1CG396900 Rh1DG414100
rosa_wichuraiana Rw1G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 2 cut(s) 322, 379
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 6 cut(s) 30, 33, 39, 51, 300, 645
AclWI GGATC 2 cut(s) 284, 673
AcsI RAATTY 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 537
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 3 cut(s) 187, 631, 661
AloI GAACNNNNNNTCC 2 cut(s) 680, 712
AluBI AGCT 4 cut(s) 59, 102, 194, 496
AluI AGCT 4 cut(s) 59, 102, 194, 496
Alw26I GTCTC 3 cut(s) 52, 85, 401
AlwI GGATC 2 cut(s) 284, 673
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 2 cut(s) 60, 173
Aor13HI TCCGGA 1 cut(s) 704
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 3 cut(s) 9, 102, 194
ApoI RAATTY 1 cut(s) 680
Asp700I GAANNNNTTC 2 cut(s) 489, 692
AspS9I GGNCC 2 cut(s) 392, 553
AsuC2I CCSGG 1 cut(s) 642
AsuHPI GGTGA 3 cut(s) 303, 414, 651
AvaI CYCGRG 2 cut(s) 60, 173
AvaII GGWCC 1 cut(s) 553
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 21, 89, 181
BccI CCATC 6 cut(s) 50, 87, 268, 292, 304, 463
BciT130I CCWGG 3 cut(s) 189, 633, 663
BcnI CCSGG 1 cut(s) 642
BcoDI GTCTC 3 cut(s) 52, 85, 401
BfmI CTRYAG 2 cut(s) 180, 195
BfuAI ACCTGC 2 cut(s) 322, 379
BisI GCNGC 5 cut(s) 10, 30, 33, 103, 195
BlsI GCNGC 5 cut(s) 11, 31, 34, 104, 196
Bme1390I CCNGG 4 cut(s) 189, 633, 642, 663
Bme18I GGWCC 1 cut(s) 553
BmeT110I CYCGRG 2 cut(s) 60, 173
BmgT120I GGNCC 2 cut(s) 392, 553
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 4 cut(s) 189, 633, 642, 663
BmsI GCATC 2 cut(s) 281, 383
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 642
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 463, 493, 680, 710
Bse1I ACTGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 704
BseBI CCWGG 3 cut(s) 189, 633, 663
BseGI GGATG 5 cut(s) 284, 296, 374, 509, 579
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 555
BseXI GCAGC 3 cut(s) 21, 89, 181
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 60, 173
BsiSI CCGG 2 cut(s) 642, 705
BslFI GGGAC 3 cut(s) 313, 583, 624
BsmAI GTCTC 3 cut(s) 52, 85, 401
BsmBI CGTCTC 2 cut(s) 52, 85
BsmFI GGGAC 3 cut(s) 313, 583, 624
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 2 cut(s) 60, 173
Bsp1286I GDGCHC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 2 cut(s) 289, 665
BspACI CCGC 6 cut(s) 30, 33, 39, 51, 300, 645
BspANI GGCC 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 704
BspLI GGNNCC 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 2 cut(s) 322, 379
BspPI GGATC 2 cut(s) 284, 673
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 555
BssMI GATC 2 cut(s) 289, 665
Bst2UI CCWGG 3 cut(s) 189, 633, 663
Bst4CI ACNGT 3 cut(s) 79, 414, 597
Bst6I CTCTTC 1 cut(s) 364
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 5 cut(s) 284, 296, 374, 509, 579
BstKTI GATC 2 cut(s) 292, 668
BstMAI GTCTC 3 cut(s) 52, 85, 401
BstMBI GATC 2 cut(s) 289, 665
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 38, 108, 184
BstNI CCWGG 3 cut(s) 189, 633, 663
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 187, 631, 640, 661
BstSFI CTRYAG 2 cut(s) 180, 195
BstV1I GCAGC 3 cut(s) 21, 89, 181
BstV2I GAAGAC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 5 cut(s) 284, 296, 374, 509, 579
BtsIMutI CAGTG 3 cut(s) 447, 548, 593
BveI ACCTGC 2 cut(s) 322, 379
CaiI CAGNNNCTG 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 392, 553
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 2 cut(s) 158, 379
CviJI RGCY 9 cut(s) 59, 65, 102, 111, 178, 194, 393, 496, 616
CviKI_1 RGCY 9 cut(s) 59, 65, 102, 111, 178, 194, 393, 496, 616
DpnI GATC 2 cut(s) 291, 667
DpnII GATC 2 cut(s) 289, 665
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 60, 173
Eco91I GGTNACC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 392
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 3 cut(s) 187, 631, 661
EcoRV GATATC 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 67
Esp3I CGTCTC 2 cut(s) 52, 85
FaeI CATG 2 cut(s) 161, 382
FaqI GGGAC 3 cut(s) 313, 583, 624
FatI CATG 2 cut(s) 157, 378
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 5 cut(s) 10, 30, 33, 103, 195
FokI GGATG 5 cut(s) 271, 283, 361, 496, 566
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 10, 30, 33, 103, 195
GluI GCNGC 5 cut(s) 10, 30, 33, 103, 195
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 1 cut(s) 393
HapII CCGG 2 cut(s) 642, 705
Hin1II CATG 2 cut(s) 161, 382
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HinfI GANTC 1 cut(s) 485
HpaII CCGG 2 cut(s) 642, 705
HphI GGTGA 3 cut(s) 303, 414, 651
Hpy166II GTNNAC 2 cut(s) 16, 368
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 5 cut(s) 173, 482, 583, 685, 705
Hpy8I GTNNAC 2 cut(s) 16, 368
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 3 cut(s) 79, 414, 597
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 197, 272, 374, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 108, 184
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 2 cut(s) 161, 382
Kpn2I TCCGGA 1 cut(s) 704
Kzo9I GATC 2 cut(s) 289, 665
LmnI GCTCC 3 cut(s) 108, 191, 469
Lsp1109I GCAGC 3 cut(s) 21, 89, 181
LweI GCATC 2 cut(s) 281, 383
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 4 cut(s) 129, 212, 420, 575
MalI GATC 2 cut(s) 291, 667
MboI GATC 2 cut(s) 289, 665
MboII GAAGA 5 cut(s) 102, 255, 351, 537, 685
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 3 cut(s) 150, 234, 680
MnlI CCTC 6 cut(s) 176, 235, 267, 290, 341, 489
Mph1103I ATGCAT 1 cut(s) 403
MroI TCCGGA 1 cut(s) 704
MroXI GAANNNNTTC 2 cut(s) 489, 692
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 2 cut(s) 642, 705
MspR9I CCNGG 4 cut(s) 189, 633, 642, 663
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 3 cut(s) 189, 633, 663
MwoI GCNNNNNNNGC 3 cut(s) 38, 108, 184
NciI CCSGG 1 cut(s) 642
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 289, 665
NlaIII CATG 2 cut(s) 161, 382
NlaIV GGNNCC 1 cut(s) 110
NmuCI GTSAC 2 cut(s) 129, 420
NsiI ATGCAT 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 489, 692
PfeI GAWTC 1 cut(s) 485
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 5 cut(s) 11, 31, 34, 104, 196
Psp6I CCWGG 3 cut(s) 187, 631, 661
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 3 cut(s) 187, 631, 661
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 2 cut(s) 392, 553
PspXI VCTCGAGB 1 cut(s) 60
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 496
SatI GCNGC 5 cut(s) 10, 30, 33, 103, 195
Sau3AI GATC 2 cut(s) 289, 665
Sau96I GGNCC 2 cut(s) 392, 553
ScrFI CCNGG 4 cut(s) 189, 633, 642, 663
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 2 cut(s) 281, 383
SfcI CTRYAG 2 cut(s) 180, 195
Sfr274I CTCGAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 553
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
Sse9I AATT 3 cut(s) 150, 234, 680
SsiI CCGC 6 cut(s) 30, 33, 39, 51, 300, 645
StyD4I CCNGG 4 cut(s) 187, 631, 640, 661
TaaI ACNGT 3 cut(s) 79, 414, 597
TaiI ACGT 1 cut(s) 565
TaqI TCGA 3 cut(s) 61, 362, 668
TaqII GACCGA 1 cut(s) 570
TasI AATT 3 cut(s) 150, 234, 680
TauI GCSGC 2 cut(s) 32, 35
TfiI GAWTC 1 cut(s) 485
TscAI CASTG 3 cut(s) 454, 555, 600
TseFI GTSAC 2 cut(s) 129, 420
TseI GCWGC 3 cut(s) 9, 102, 194
Tsp45I GTSAC 2 cut(s) 129, 420
TspDTI ATGAA 3 cut(s) 17, 238, 498
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 454, 555, 600
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 1 cut(s) 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 60
XmnI GAANNNNTTC 2 cut(s) 489, 692
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.