AT5G52430

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011979
Physical Location & Seq
Reverse (-)
21282750 .. 21285366
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52430.1

Sequence Viewer

Length: 1317 bp
ATGAGGAACGTTGTTAATAACAGCGTTGAGACTGTTAACGCCGCCGCTACCGCCATCGTCACCGCCGAGTCTCGAGTACAGCCGTCTTCTTCTCAGAAGGGAAGATGGGGAAAATGTTGGAGTTTATATTCATGTTTTGGAACTCAGAAGAACAATAAAAGGATTGGTAATGCTGTGCTTGTACCTGAACCGGTTACATCTGGAGTTCCGGTAGTTACTGTTCAAAACTCAGCTACTTCAACTACTGTTGTTCTTCCCTTTATAGCTCCTCCTTCATCTCCAGCTTCGTTTTTGCAATCGGATCCTTCATCGGTTTCTCACTCGCCTGTTGGTCCACTTTCTCTTACTAGCAATACATTCTCGCCTAAGGAGCCTCAATCTGTCTTTACCGTTGGACCTTATGCTAATGAAACTCAACCAGTCACTCCTCCGGTGTTCTCTGCGTTTATAACTGAGCCATCTACTGCACCGTATACTCCACCTCCTGAATCATCAGTCCATATAACTACACCTTCTTCACCTGAAGTGCCCTTTGCTCAGTTGCTTACTTCTTCGTTGGAGCTAACTCGGAGGGATAGTACTAGTGGGATGAATCAAAAGTTTTCGTCTTCGCACTATGAGTTTCGGTCTAATCAGGTGTGTCCGGGGAGTCCTGGTGGTGGTAATCTAATCTCTCCCGGGTCAGTGATTTCAAACTCTGGTACATCTTCTCCTTACCCTGGTAAATCACCCATGGTTGAGTTTCGAATAGGCGAGCCTCCAAAGTTCTTGGGTTTTGAGCACTTTACAGCTCGTAAATGGGGATCGAGGTTCGGTTCTGGATCGATCACACCTGTTGGGCATGGTTCAGGTTTGGCTTCAGGCGCTCTGACACCAAATGGTCCAGAGATAGTATCTGGAAACTTAACACCCAACAATACCACATGGCCTCTTCAAAATCAGATCTCTGAGGTCGCTTCACTGGCAAATTCGGATCATGGCTCTGAAGTCATGGTAGCAGATCACAGAGTTTCGTTTGAGTTAACAGGTGAAGACGTTGCACGTTGTCTTGCAAGCAAGCTAAATCGATCACACGACAGAATGAACAACAATGACCGGATCGAAACAGAGGAGAGTTCATCAACAGACATAAGAAGAAACATAGAGAAAAGGTCAGGAGACAGAGAGAACGAACAGCATAGAATTCAGAAGCTGAGTTCCTCATCGATTGGATCTAGCAAAGAATTTAAATTCGACAACACGAAAGACGAGAATATCGAGAAGGTTGCAGGAAACAGCTGGAGTTTCTTCCCGGGGTTACGATCTGGAGTCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

46.83

Weight (kDa)

6.77

Isoelectric Point (pI)

63.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25620 AT5G52430
fragaria_vesca FvH4_7g29970 FvH4_7g29970 FvH4_7g29970
malus_domestica MD01G1205800.v1.1
prunus_persica Prupe.2G298300_v2.0.a1
pyrus_communis pycom01g21520 pycom07g25120
rosa_chinensis RchiOBHm_Chr1g0377921
rosa_laevigata RLG00000026486
rosa_multiflora Rmu_sc0004824.1_g000016
rosa_roxburghii Rroxscaffold_4G00280940
rosa_rugosa Rorug01G0405400
rosa_samantha Rh1AG426000 Rh1BG383100 Rh1CG396900 Rh1DG414100
rosa_wichuraiana Rw1G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 449
AccI GTMKAC 1 cut(s) 473
AciI CCGC 4 cut(s) 42, 45, 51, 63
AclI AACGTT 1 cut(s) 9
AclWI GGATC 7 cut(s) 296, 309, 811, 829, 981, 1106, 1219
AcsI RAATTY 4 cut(s) 967, 1182, 1223, 1229
AcuI CTGAAG 3 cut(s) 543, 843, 1005
AfaI GTAC 4 cut(s) 78, 183, 580, 703
AfiI CCNNNNNNNGG 2 cut(s) 659, 719
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 224, 240, 693, 935
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 2 cut(s) 652, 718
AluBI AGCT 9 cut(s) 233, 266, 284, 562, 791, 1060, 1192, 1278, 1314
AluI AGCT 9 cut(s) 233, 266, 284, 562, 791, 1060, 1192, 1278, 1314
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 3 cut(s) 23, 75, 1152
AlwI GGATC 7 cut(s) 296, 309, 811, 829, 981, 1106, 1219
AlwNI CAGNNNCTG 1 cut(s) 1192
Ama87I CYCGRG 3 cut(s) 72, 677, 1291
AoxI GGCC 1 cut(s) 926
ApoI RAATTY 4 cut(s) 967, 1182, 1223, 1229
AsiGI ACCGGT 1 cut(s) 190
AspLEI GCGC 1 cut(s) 866
AspS9I GGNCC 3 cut(s) 332, 395, 881
AsuC2I CCSGG 5 cut(s) 645, 678, 679, 1292, 1293
AsuHPI GGTGA 4 cut(s) 52, 510, 720, 1040
AsuII TTCGAA 1 cut(s) 745
AvaI CYCGRG 3 cut(s) 72, 677, 1291
AvaII GGWCC 3 cut(s) 332, 395, 881
AxyI CCTNAGG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 531
BamHI GGATCC 1 cut(s) 301
BbsI GAAGAC 3 cut(s) 78, 600, 1038
Bbv12I GWGCWC 1 cut(s) 783
BccI CCATC 3 cut(s) 62, 99, 466
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 1247, 1281
BciT130I CCWGG 2 cut(s) 654, 720
BcnI CCSGG 5 cut(s) 645, 678, 679, 1292, 1293
BcoDI GTCTC 3 cut(s) 23, 75, 1152
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 3 cut(s) 348, 582, 1215
BfoI RGCGCY 1 cut(s) 867
BglII AGATCT 1 cut(s) 942
BisI GCNGC 2 cut(s) 42, 45
BlsI GCNGC 2 cut(s) 43, 46
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 7 cut(s) 645, 654, 678, 679, 720, 1292, 1293
Bme18I GGWCC 3 cut(s) 332, 395, 881
BmeT110I CYCGRG 3 cut(s) 72, 677, 1291
BmgT120I GGNCC 3 cut(s) 332, 395, 881
BmiI GGNNCC 2 cut(s) 303, 372
BmrFI CCNGG 7 cut(s) 645, 654, 678, 679, 720, 1292, 1293
BpiI GAAGAC 3 cut(s) 78, 600, 1038
BpmI CTGGAG 3 cut(s) 222, 264, 1300
Bpu14I TTCGAA 1 cut(s) 745
BpuMI CCSGG 5 cut(s) 645, 678, 679, 1292, 1293
Bsa29I ATCGAT 3 cut(s) 824, 1066, 1205
BsaJI CCNNGG 6 cut(s) 644, 677, 718, 732, 1291, 1292
BsaWI WCCGGW 4 cut(s) 190, 208, 430, 1095
Bsc4I CCNNNNNNNGG 2 cut(s) 659, 719
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 2 cut(s) 419, 966
Bse21I CCTNAGG 1 cut(s) 366
BseBI CCWGG 2 cut(s) 654, 720
BseCI ATCGAT 3 cut(s) 824, 1066, 1205
BseDI CCNNGG 6 cut(s) 644, 677, 718, 732, 1291, 1292
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 659, 719
BseMII CTCAG 7 cut(s) 107, 158, 243, 444, 551, 939, 1184
BseNI ACTGG 2 cut(s) 419, 966
BseRI GAGGAG 3 cut(s) 258, 417, 1124
BseSI GKGCMC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 928
BshTI ACCGGT 1 cut(s) 190
BshVI ATCGAT 3 cut(s) 824, 1066, 1205
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 3 cut(s) 72, 677, 1291
BsiSI CCGG 7 cut(s) 191, 209, 431, 644, 678, 1096, 1292
BslI CCNNNNNNNGG 2 cut(s) 659, 719
BsmAI GTCTC 3 cut(s) 23, 75, 1152
BsnI GGCC 1 cut(s) 928
BsoBI CYCGRG 3 cut(s) 72, 677, 1291
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 531, 783
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 4 cut(s) 42, 45, 51, 63
BspANI GGCC 1 cut(s) 928
BspCNI CTCAG 7 cut(s) 106, 157, 242, 445, 550, 940, 1185
BspDI ATCGAT 3 cut(s) 824, 1066, 1205
BspLI GGNNCC 2 cut(s) 303, 372
BspPI GGATC 7 cut(s) 296, 309, 811, 829, 981, 1106, 1219
BspT104I TTCGAA 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 2 cut(s) 419, 966
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 6 cut(s) 644, 677, 718, 732, 1291, 1292
BssNAI GTATAC 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 732
Bst1107I GTATAC 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 654, 720
Bst4CI ACNGT 5 cut(s) 34, 220, 247, 391, 471
Bst6I CTCTTC 1 cut(s) 936
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 3 cut(s) 755, 1054, 1058
BstDEI CTNAG 8 cut(s) 93, 144, 229, 366, 453, 537, 948, 1193
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 867
BstHHI GCGC 1 cut(s) 866
BstMAI GTCTC 3 cut(s) 23, 75, 1152
BstMWI GCNNNNNNNGC 4 cut(s) 50, 370, 863, 962
BstNI CCWGG 2 cut(s) 654, 720
BstSCI CCNGG 7 cut(s) 643, 652, 676, 677, 718, 1290, 1291
BstSLI GKGCMC 1 cut(s) 531
BstV2I GAAGAC 3 cut(s) 78, 600, 1038
BstX2I RGATCY 3 cut(s) 301, 942, 1211
BstYI RGATCY 3 cut(s) 301, 942, 1211
BstZ17I GTATAC 1 cut(s) 474
Bsu15I ATCGAT 3 cut(s) 824, 1066, 1205
Bsu36I CCTNAGG 1 cut(s) 366
BsuRI GGCC 1 cut(s) 928
BsuTUI ATCGAT 3 cut(s) 824, 1066, 1205
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 690, 959
Cac8I GCNNGC 3 cut(s) 755, 1054, 1058
CaiI CAGNNNCTG 1 cut(s) 1192
CfoI GCGC 1 cut(s) 866
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 3 cut(s) 332, 395, 881
Cfr9I CCCGGG 2 cut(s) 677, 1291
ClaI ATCGAT 3 cut(s) 824, 1066, 1205
Csp6I GTAC 4 cut(s) 77, 182, 579, 702
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 6 cut(s) 132, 733, 842, 924, 977, 991
CviQI GTAC 4 cut(s) 77, 182, 579, 702
DdeI CTNAG 8 cut(s) 93, 144, 229, 366, 453, 537, 948, 1193
DraI TTTAAA 1 cut(s) 1228
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Eco130I CCWWGG 1 cut(s) 732
Eco47I GGWCC 3 cut(s) 332, 395, 881
Eco57I CTGAAG 3 cut(s) 543, 843, 1005
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 3 cut(s) 72, 677, 1291
EcoRI GAATTC 1 cut(s) 1182
EcoRII CCWGG 2 cut(s) 652, 718
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 6 cut(s) 135, 736, 845, 927, 980, 994
FatI CATG 6 cut(s) 131, 732, 841, 923, 976, 990
FblI GTMKAC 1 cut(s) 473
Fnu4HI GCNGC 2 cut(s) 42, 45
FokI GGATG 1 cut(s) 601
Fsp4HI GCNGC 2 cut(s) 42, 45
FspBI CTAG 3 cut(s) 348, 582, 1215
GlaI GCGC 1 cut(s) 865
GluI GCNGC 2 cut(s) 42, 45
GsuI CTGGAG 3 cut(s) 222, 264, 1300
HaeII RGCGCY 1 cut(s) 867
HaeIII GGCC 1 cut(s) 928
HapII CCGG 7 cut(s) 191, 209, 431, 644, 678, 1096, 1292
HhaI GCGC 1 cut(s) 866
Hin1II CATG 6 cut(s) 135, 736, 845, 927, 980, 994
Hin6I GCGC 1 cut(s) 864
HinP1I GCGC 1 cut(s) 864
HincII GTYRAC 2 cut(s) 37, 1023
HindII GTYRAC 2 cut(s) 37, 1023
HinfI GANTC 5 cut(s) 68, 488, 592, 649, 1308
HpaI GTTAAC 2 cut(s) 37, 1023
HpaII CCGG 7 cut(s) 191, 209, 431, 644, 678, 1096, 1292
HphI GGTGA 4 cut(s) 52, 510, 720, 1040
Hpy166II GTNNAC 4 cut(s) 37, 335, 474, 1023
Hpy188III TCNNGA 9 cut(s) 72, 201, 485, 819, 884, 897, 1155, 1258, 1305
Hpy8I GTNNAC 4 cut(s) 37, 335, 474, 1023
HpyAV CCTTC 5 cut(s) 91, 282, 315, 522, 1255
HpyCH4III ACNGT 5 cut(s) 34, 220, 247, 391, 471
HpyCH4IV ACGT 3 cut(s) 9, 1035, 1042
HpyCH4V TGCA 5 cut(s) 295, 467, 1040, 1052, 1268
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 370, 863, 962
HpyF3I CTNAG 8 cut(s) 93, 144, 229, 366, 453, 537, 948, 1193
HpySE526I ACGT 3 cut(s) 9, 1035, 1042
Hsp92II CATG 6 cut(s) 135, 736, 845, 927, 980, 994
HspAI GCGC 1 cut(s) 864
KspAI GTTAAC 2 cut(s) 37, 1023
LmnI GCTCC 3 cut(s) 271, 370, 559
MaeI CTAG 3 cut(s) 348, 582, 1215
MaeII ACGT 3 cut(s) 9, 1035, 1042
MaeIII GTNAC 5 cut(s) 58, 193, 214, 421, 1296
MflI RGATCY 3 cut(s) 301, 942, 1211
MhlI GDGCHC 2 cut(s) 531, 783
MluCI AATT 4 cut(s) 967, 1182, 1223, 1229
MlyI GAGTC 3 cut(s) 77, 658, 1317
MmeI TCCRAC 3 cut(s) 98, 373, 537
MseI TTAA 5 cut(s) 15, 36, 905, 1022, 1227
MspA1I CMGCKG 1 cut(s) 1278
MspI CCGG 7 cut(s) 191, 209, 431, 644, 678, 1096, 1292
MspR9I CCNGG 7 cut(s) 645, 654, 678, 679, 720, 1292, 1293
MvaI CCWGG 2 cut(s) 654, 720
MwoI GCNNNNNNNGC 4 cut(s) 50, 370, 863, 962
NciI CCSGG 5 cut(s) 645, 678, 679, 1292, 1293
NcoI CCATGG 1 cut(s) 732
NlaIII CATG 6 cut(s) 135, 736, 845, 927, 980, 994
NlaIV GGNNCC 2 cut(s) 303, 372
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 58, 421
NspV TTCGAA 1 cut(s) 745
PaeR7I CTCGAG 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 1254
PfeI GAWTC 2 cut(s) 488, 592
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 2 cut(s) 43, 46
PleI GAGTC 3 cut(s) 76, 657, 1316
PpsI GAGTC 3 cut(s) 76, 657, 1316
PsiI TTATAA 1 cut(s) 449
Psp1406I AACGTT 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 652, 718
PspGI CCWGG 2 cut(s) 652, 718
PspN4I GGNNCC 2 cut(s) 303, 372
PspPI GGNCC 3 cut(s) 332, 395, 881
PsrI GAACNNNNNNTAC 2 cut(s) 204, 236
PstNI CAGNNNCTG 1 cut(s) 1192
PsuI RGATCY 3 cut(s) 301, 942, 1211
PvuII CAGCTG 1 cut(s) 1278
RsaI GTAC 4 cut(s) 78, 183, 580, 703
RsaNI GTAC 4 cut(s) 77, 182, 579, 702
SaqAI TTAA 5 cut(s) 15, 36, 905, 1022, 1227
SatI GCNGC 2 cut(s) 42, 45
Sau96I GGNCC 3 cut(s) 332, 395, 881
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 3 cut(s) 77, 658, 1317
ScrFI CCNGG 7 cut(s) 645, 654, 678, 679, 720, 1292, 1293
SduI GDGCHC 2 cut(s) 531, 783
Sfr274I CTCGAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 745
SinI GGWCC 3 cut(s) 332, 395, 881
SlaI CTCGAG 1 cut(s) 72
SmaI CCCGGG 2 cut(s) 679, 1293
SmiI ATTTAAAT 1 cut(s) 1228
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 4 cut(s) 967, 1182, 1223, 1229
SsiI CCGC 4 cut(s) 42, 45, 51, 63
SspMI CTAG 3 cut(s) 348, 582, 1215
StyD4I CCNGG 7 cut(s) 643, 652, 676, 677, 718, 1290, 1291
StyI CCWWGG 1 cut(s) 732
SwaI ATTTAAAT 1 cut(s) 1228
TaaI ACNGT 5 cut(s) 34, 220, 247, 391, 471
TaiI ACGT 3 cut(s) 12, 1038, 1045
TaqI TCGA 9 cut(s) 73, 745, 806, 824, 1066, 1101, 1205, 1233, 1257
TaqII GACCGA 1 cut(s) 615
TasI AATT 4 cut(s) 967, 1182, 1223, 1229
TatI WGTACW 2 cut(s) 76, 578
TauI GCSGC 2 cut(s) 44, 47
TfiI GAWTC 2 cut(s) 488, 592
Tru1I TTAA 5 cut(s) 15, 36, 905, 1022, 1227
Tru9I TTAA 5 cut(s) 15, 36, 905, 1022, 1227
TscAI CASTG 2 cut(s) 690, 966
TseFI GTSAC 2 cut(s) 58, 421
Tsp45I GTSAC 2 cut(s) 58, 421
TspDTI ATGAA 7 cut(s) 120, 264, 297, 423, 605, 1097, 1107
TspMI CCCGGG 2 cut(s) 677, 1291
TspRI CASTG 2 cut(s) 690, 966
VpaK11BI GGWCC 3 cut(s) 332, 395, 881
XapI RAATTY 4 cut(s) 967, 1182, 1223, 1229
XhoI CTCGAG 1 cut(s) 72
XmaI CCCGGG 2 cut(s) 677, 1291
XmiI GTMKAC 1 cut(s) 473
XspI CTAG 3 cut(s) 348, 582, 1215
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.