Prupe.2G298300_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011979
Physical Location & Seq
Reverse (-)
28789987 .. 28794151
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G298300.1

Sequence Viewer

Length: 1500 bp
ATGAGAAGCGTCAATAGCAGCGTTGATACTATCAACGCCGCCGCCACTGCCATCGTCTCAGCCGAAGCTCGACCTCAGCCCACCACCGTCCCTAAAAGAAGATGGGGAAGCTGCTGGAGCCTATATTGGTGCTTTGGGCCTCATAAAAACAAGCGAATTGGTCATGCTGTCCTCGTTCCTGAGCCCGTAGTTCCAGGAGCTGCAGTTTCTGCCATTGATAACCAAACAACCTCAACTGCAATTGTAGTACCCTTCATTGCCCCTCCATCTTCTCCTGCATCTTTCCTCCCATCTGATCCACCATCTGCTACCCAATCACCTGCTGGATTTCTGTCCCTCAAATCTCTATCTGCCAATGCCTATTCTCCGGGTGGTCCTGCTTCCATCTTTTCCATTGGCCCTTATGCATATGAGACCCAGTTAGTCTCACCACCTGTATTCTCTACCTTCAACACTGAACCATCTACTGCTCCATTCACTCCCCCTCCCGAATCTGTGCAGTTGACTACACCTTCATCCCCTGAAGTGCCTTTTGCTCAACTTCTGACTTCTTCACTGGACCGAAATCGTAGAAATAGTGGTACCAACCAGAAGTTTGCATTGTCACACTACGAATTCCAGCCTTACCAACAATATCCAGGAAGTCCGGGTGGTAATCTCATATCACCAGGATCAGCAGTCTCAAATTCTGGCACATCTTCTCCTTTTCCTGACAGACACCCTGTGCTTGAGTTTCGCATGGGAGAAGCTCCAAAACTCTTTGGCTTTGATCATTTCACCACTCGTAAGTGGGGTTCTAGGATAGGTTCTGGATCATTGACCCCAGATGGTGTGGGGCTGGGTTCTAGGCTAGGTTCTGGGTCATTAACGCCGGATGGTAATGAGTTAGGTTCAAGGCTAGGCTCTGGATGTGTGACCCCCAATGGTGCTGGAATCGGTTCCAGGTTGGGTTCTGGCTGTTTGACGCCTGATGGTCCTGGCCCTGCCTCTAGAGACAGTTTCCTTCTGGAGAACCAGATATCTGAGGTGGCATCCCTGGCCAACTCAGAGAGTGGATGTCAAACTGTAGAAACTGTATTTGATCATAGGGTGTCATTTGAATTGACTGGTGAAGATGTTGCGTGCTGTCTTGCAAATAAAGCAGTGGCATCAAATAGAACTGCATCAGGATCTTCAAAGGTTATAGCATCAGAATACCCAAGTGAAAGAGATGCGTTATCTTCAGATTCTAGTAATCACTGTGAGTTTAGTGTTGAGGAAAGTTCCAGTAGAATTCCTGAAAATGTTTCTGGAGAAGGGGAGGATCAAGGTTACCGGAAGCATAGATCCATCACCCTTGGGTCAACGAAGGACTTTAATTTTGACAACACAAAGGCTGAAGTTCCCAATAAGCCCAACATTGGCTCAGAGTGGTGGGCTAACAAAAATGTTGCTGCTAAGGAATCTAAGCCTTGTAATGACTGGACTTTCTTTCCAATTCTACAACCTGGAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

500

Amino Acids

52.71

Weight (kDa)

5.83

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25620 AT5G52430
fragaria_vesca FvH4_7g29970 FvH4_7g29970 FvH4_7g29970
malus_domestica MD01G1205800.v1.1
prunus_persica Prupe.2G298300_v2.0.a1
pyrus_communis pycom01g21520 pycom07g25120
rosa_chinensis RchiOBHm_Chr1g0377921
rosa_laevigata RLG00000026486
rosa_multiflora Rmu_sc0004824.1_g000016
rosa_roxburghii Rroxscaffold_4G00280940
rosa_rugosa Rorug01G0405400
rosa_samantha Rh1AG426000 Rh1BG383100 Rh1CG396900 Rh1DG414100
rosa_wichuraiana Rw1G037240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 328
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 581
AciI CCGC 2 cut(s) 39, 42
AclWI GGATC 6 cut(s) 290, 679, 820, 1177, 1311, 1320
AcoI YGGCCR 1 cut(s) 1038
AcsI RAATTY 3 cut(s) 614, 685, 1272
AcuI CTGAAG 3 cut(s) 543, 1206, 1398
AcyI GRCGYC 1 cut(s) 965
AdeI CACNNNGTG 1 cut(s) 724
AfaI GTAC 2 cut(s) 249, 583
AfiI CCNNNNNNNGG 1 cut(s) 1400
AgsI TTSAA 4 cut(s) 451, 894, 1100, 1176
AjnI CCWGG 7 cut(s) 193, 637, 667, 941, 976, 1035, 1486
AluBI AGCT 4 cut(s) 68, 111, 200, 749
AluI AGCT 4 cut(s) 68, 111, 200, 749
Alw26I GTCTC 5 cut(s) 61, 407, 430, 685, 987
AlwI GGATC 6 cut(s) 290, 679, 820, 1177, 1311, 1320
AlwNI CAGNNNCTG 2 cut(s) 200, 209
AoxI GGCC 4 cut(s) 137, 397, 979, 1038
ApeKI GCWGC 4 cut(s) 18, 111, 200, 1433
ApoI RAATTY 3 cut(s) 614, 685, 1272
ArsI GACNNNNNNTTYG 2 cut(s) 1343, 1375
Asp700I GAANNNNTTC 1 cut(s) 937
Asp718I GGTACC 1 cut(s) 581
AspS9I GGNCC 6 cut(s) 137, 374, 398, 559, 974, 980
AsuC2I CCSGG 2 cut(s) 369, 648
AsuHPI GGTGA 6 cut(s) 309, 420, 657, 769, 1121, 1324
AvaII GGWCC 3 cut(s) 374, 559, 974
BalI TGGCCA 1 cut(s) 1040
BanI GGYRCC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 30, 98, 187, 1420
BciT130I CCWGG 7 cut(s) 195, 639, 669, 943, 978, 1037, 1488
BclI TGATCA 2 cut(s) 769, 1081
BcnI CCSGG 2 cut(s) 369, 648
BcoDI GTCTC 5 cut(s) 61, 407, 430, 685, 987
BfaI CTAG 6 cut(s) 798, 846, 851, 899, 990, 1230
BfmI CTRYAG 2 cut(s) 201, 1065
BfuAI ACCTGC 1 cut(s) 328
BisI GCNGC 6 cut(s) 19, 39, 42, 112, 201, 1434
BlsI GCNGC 6 cut(s) 20, 40, 43, 113, 202, 1435
Bme1390I CCNGG 9 cut(s) 195, 369, 639, 648, 669, 943, 978, 1037, 1488
Bme18I GGWCC 3 cut(s) 374, 559, 974
BmgT120I GGNCC 6 cut(s) 137, 374, 398, 559, 974, 980
BmiI GGNNCC 3 cut(s) 119, 583, 940
BmrFI CCNGG 9 cut(s) 195, 369, 639, 648, 669, 943, 978, 1037, 1488
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 6 cut(s) 287, 1040, 1157, 1172, 1196, 1201
BmuI ACTGGG 1 cut(s) 412
BpmI CTGGAG 3 cut(s) 136, 1028, 1311
Bpu10I CCTNAGC 3 cut(s) 75, 180, 1437
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 2 cut(s) 369, 648
BsaHI GRCGYC 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 1035, 1336
BsaWI WCCGGW 1 cut(s) 1314
BsaXI ACNNNNNCTCC 6 cut(s) 189, 219, 469, 499, 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 1400
Bse1I ACTGG 5 cut(s) 418, 561, 1111, 1266, 1466
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 7 cut(s) 195, 639, 669, 943, 978, 1037, 1488
BseDI CCNNGG 2 cut(s) 1035, 1336
BseGI GGATG 5 cut(s) 515, 880, 914, 1031, 1061
BseLI CCNNNNNNNGG 1 cut(s) 1400
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 6 cut(s) 72, 89, 171, 1014, 1059, 1419
BseNI ACTGG 5 cut(s) 418, 561, 1111, 1266, 1466
BseXI GCAGC 4 cut(s) 30, 98, 187, 1420
BseYI CCCAGC 1 cut(s) 838
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 4 cut(s) 139, 399, 981, 1040
BshNI GGYRCC 1 cut(s) 581
BsiSI CCGG 4 cut(s) 368, 647, 872, 1315
BslFI GGGAC 2 cut(s) 74, 319
BslI CCNNNNNNNGG 1 cut(s) 1400
BsmAI GTCTC 5 cut(s) 61, 407, 430, 685, 987
BsmBI CGTCTC 1 cut(s) 61
BsmFI GGGAC 2 cut(s) 74, 319
BsnI GGCC 4 cut(s) 139, 399, 981, 1040
Bso31I GGTCTC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
BspACI CCGC 2 cut(s) 39, 42
BspANI GGCC 4 cut(s) 139, 399, 981, 1040
BspCNI CTCAG 6 cut(s) 71, 88, 172, 1015, 1058, 1418
BspLI GGNNCC 3 cut(s) 119, 583, 940
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 6 cut(s) 290, 679, 820, 1177, 1311, 1320
BspT107I GGYRCC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 5 cut(s) 418, 561, 1111, 1266, 1466
BssECI CCNNGG 2 cut(s) 1035, 1336
BssMI GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
BssNI GRCGYC 1 cut(s) 965
BssT1I CCWWGG 1 cut(s) 1336
Bst2UI CCWGG 7 cut(s) 195, 639, 669, 943, 978, 1037, 1488
Bst4CI ACNGT 5 cut(s) 88, 998, 1066, 1075, 1241
BstACI GRCGYC 1 cut(s) 965
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 1123
BstDEI CTNAG 8 cut(s) 58, 75, 180, 1023, 1045, 1405, 1437, 1446
BstEII GGTNACC 1 cut(s) 1310
BstF5I GGATG 5 cut(s) 515, 880, 914, 1031, 1061
BstKTI GATC 8 cut(s) 298, 674, 772, 815, 1084, 1172, 1306, 1328
BstMAI GTCTC 5 cut(s) 61, 407, 430, 685, 987
BstMBI GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
BstMWI GCNNNNNNNGC 6 cut(s) 15, 47, 117, 209, 1037, 1139
BstNI CCWGG 7 cut(s) 195, 639, 669, 943, 978, 1037, 1488
BstPI GGTNACC 1 cut(s) 1310
BstSCI CCNGG 9 cut(s) 193, 367, 637, 646, 667, 941, 976, 1035, 1486
BstSFI CTRYAG 2 cut(s) 201, 1065
BstV1I GCAGC 4 cut(s) 30, 98, 187, 1420
BstX2I RGATCY 2 cut(s) 1169, 1325
BstYI RGATCY 2 cut(s) 1169, 1325
BsuRI GGCC 4 cut(s) 139, 399, 981, 1040
BtsCI GGATG 5 cut(s) 515, 880, 914, 1031, 1061
BtsI GCAGTG 2 cut(s) 45, 1149
BtsIMutI CAGTG 5 cut(s) 45, 453, 554, 1149, 1237
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 1123
CaiI CAGNNNCTG 2 cut(s) 200, 209
Cfr13I GGNCC 6 cut(s) 137, 374, 398, 559, 974, 980
CseI GACGC 1 cut(s) 973
Csp6I GTAC 2 cut(s) 248, 582
CviAII CATG 2 cut(s) 164, 739
CviQI GTAC 2 cut(s) 248, 582
DdeI CTNAG 8 cut(s) 58, 75, 180, 1023, 1045, 1405, 1437, 1446
DpnI GATC 8 cut(s) 297, 673, 771, 814, 1083, 1171, 1305, 1327
DpnII GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
DraIII CACNNNGTG 1 cut(s) 724
EaeI YGGCCR 1 cut(s) 1038
Eco130I CCWWGG 1 cut(s) 1336
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 407
Eco32I GATATC 1 cut(s) 1020
Eco47I GGWCC 3 cut(s) 374, 559, 974
Eco57I CTGAAG 3 cut(s) 543, 1206, 1398
Eco91I GGTNACC 1 cut(s) 1310
EcoO65I GGTNACC 1 cut(s) 1310
EcoRI GAATTC 2 cut(s) 614, 1272
EcoRII CCWGG 7 cut(s) 193, 637, 667, 941, 976, 1035, 1486
EcoRV GATATC 1 cut(s) 1020
EcoT14I CCWWGG 1 cut(s) 1336
EcoT22I ATGCAT 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 1336
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 2 cut(s) 167, 742
FaqI GGGAC 2 cut(s) 74, 319
FatI CATG 2 cut(s) 163, 738
FauNDI CATATG 1 cut(s) 409
FbaI TGATCA 2 cut(s) 769, 1081
Fnu4HI GCNGC 6 cut(s) 19, 39, 42, 112, 201, 1434
FokI GGATG 5 cut(s) 502, 887, 921, 1018, 1068
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 6 cut(s) 19, 39, 42, 112, 201, 1434
FspBI CTAG 6 cut(s) 798, 846, 851, 899, 990, 1230
GluI GCNGC 6 cut(s) 19, 39, 42, 112, 201, 1434
GsaI CCCAGC 1 cut(s) 842
GsuI CTGGAG 3 cut(s) 136, 1028, 1311
HaeIII GGCC 4 cut(s) 139, 399, 981, 1040
HapII CCGG 4 cut(s) 368, 647, 872, 1315
HgaI GACGC 1 cut(s) 973
Hin1I GRCGYC 1 cut(s) 965
Hin1II CATG 2 cut(s) 167, 742
HincII GTYRAC 2 cut(s) 504, 1344
HindII GTYRAC 2 cut(s) 504, 1344
HinfI GANTC 4 cut(s) 491, 933, 1226, 1442
HpaII CCGG 4 cut(s) 368, 647, 872, 1315
HphI GGTGA 6 cut(s) 309, 420, 657, 769, 1121, 1324
Hpy166II GTNNAC 2 cut(s) 504, 1344
Hpy188I TCNGA 7 cut(s) 295, 546, 1024, 1048, 1192, 1225, 1408
Hpy8I GTNNAC 2 cut(s) 504, 1344
HpyAV CCTTC 6 cut(s) 262, 457, 522, 1013, 1289, 1342
HpyCH4III ACNGT 5 cut(s) 88, 998, 1066, 1075, 1241
HpyCH4V TGCA 8 cut(s) 203, 239, 278, 407, 499, 599, 1133, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 47, 117, 209, 1037, 1139
HpyF3I CTNAG 8 cut(s) 58, 75, 180, 1023, 1045, 1405, 1437, 1446
Hsp92I GRCGYC 1 cut(s) 965
Hsp92II CATG 2 cut(s) 167, 742
KpnI GGTACC 1 cut(s) 585
Ksp22I TGATCA 2 cut(s) 769, 1081
Kzo9I GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
LmnI GCTCC 4 cut(s) 117, 197, 475, 754
Lsp1109I GCAGC 4 cut(s) 30, 98, 187, 1420
LweI GCATC 6 cut(s) 287, 1040, 1157, 1172, 1196, 1201
MaeI CTAG 6 cut(s) 798, 846, 851, 899, 990, 1230
MaeIII GTNAC 3 cut(s) 603, 913, 1310
MalI GATC 8 cut(s) 297, 673, 771, 814, 1083, 1171, 1305, 1327
MboI GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
MboII GAAGA 7 cut(s) 111, 261, 543, 690, 1124, 1164, 1212
MfeI CAATTG 1 cut(s) 240
MflI RGATCY 2 cut(s) 1169, 1325
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 1040
MluCI AATT 8 cut(s) 156, 240, 614, 685, 1100, 1272, 1357, 1476
MluNI TGGCCA 1 cut(s) 1040
Mox20I TGGCCA 1 cut(s) 1040
Mph1103I ATGCAT 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 937
MscI TGGCCA 1 cut(s) 1040
MseI TTAA 2 cut(s) 866, 1356
Msp20I TGGCCA 1 cut(s) 1040
MspI CCGG 4 cut(s) 368, 647, 872, 1315
MspR9I CCNGG 9 cut(s) 195, 369, 639, 648, 669, 943, 978, 1037, 1488
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 7 cut(s) 195, 639, 669, 943, 978, 1037, 1488
MwoI GCNNNNNNNGC 6 cut(s) 15, 47, 117, 209, 1037, 1139
NciI CCSGG 2 cut(s) 369, 648
NdeI CATATG 1 cut(s) 409
NdeII GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
NlaIII CATG 2 cut(s) 167, 742
NlaIV GGNNCC 3 cut(s) 119, 583, 940
NmuCI GTSAC 2 cut(s) 603, 913
NsiI ATGCAT 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 4 cut(s) 491, 933, 1226, 1442
PfoI TCCNGGA 2 cut(s) 193, 637
PkrI GCNGC 6 cut(s) 20, 40, 43, 113, 202, 1435
Psp6I CCWGG 7 cut(s) 193, 637, 667, 941, 976, 1035, 1486
PspEI GGTNACC 1 cut(s) 1310
PspFI CCCAGC 1 cut(s) 838
PspGI CCWGG 7 cut(s) 193, 637, 667, 941, 976, 1035, 1486
PspN4I GGNNCC 3 cut(s) 119, 583, 940
PspPI GGNCC 6 cut(s) 137, 374, 398, 559, 974, 980
PsrI GAACNNNNNNTAC 2 cut(s) 778, 810
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 2 cut(s) 200, 209
PsuI RGATCY 2 cut(s) 1169, 1325
RsaI GTAC 2 cut(s) 249, 583
RsaNI GTAC 2 cut(s) 248, 582
SaqAI TTAA 2 cut(s) 866, 1356
SatI GCNGC 6 cut(s) 19, 39, 42, 112, 201, 1434
Sau3AI GATC 8 cut(s) 295, 671, 769, 812, 1081, 1169, 1303, 1325
Sau96I GGNCC 6 cut(s) 137, 374, 398, 559, 974, 980
ScrFI CCNGG 9 cut(s) 195, 369, 639, 648, 669, 943, 978, 1037, 1488
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 6 cut(s) 287, 1040, 1157, 1172, 1196, 1201
SfcI CTRYAG 2 cut(s) 201, 1065
SinI GGWCC 3 cut(s) 374, 559, 974
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 8 cut(s) 156, 240, 614, 685, 1100, 1272, 1357, 1476
SsiI CCGC 2 cut(s) 39, 42
SspMI CTAG 6 cut(s) 798, 846, 851, 899, 990, 1230
StyD4I CCNGG 9 cut(s) 193, 367, 637, 646, 667, 941, 976, 1035, 1486
StyI CCWWGG 1 cut(s) 1336
TaaI ACNGT 5 cut(s) 88, 998, 1066, 1075, 1241
TaqI TCGA 1 cut(s) 70
TaqII GACCGA 1 cut(s) 576
TasI AATT 8 cut(s) 156, 240, 614, 685, 1100, 1272, 1357, 1476
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 4 cut(s) 491, 933, 1226, 1442
Tru1I TTAA 2 cut(s) 866, 1356
Tru9I TTAA 2 cut(s) 866, 1356
TscAI CASTG 5 cut(s) 52, 460, 561, 1149, 1244
TseFI GTSAC 2 cut(s) 603, 913
TseI GCWGC 4 cut(s) 18, 111, 200, 1433
Tsp45I GTSAC 2 cut(s) 603, 913
TspDTI ATGAA 2 cut(s) 244, 504
TspRI CASTG 5 cut(s) 52, 460, 561, 1149, 1244
VpaK11BI GGWCC 3 cut(s) 374, 559, 974
XapI RAATTY 3 cut(s) 614, 685, 1272
XbaI TCTAGA 1 cut(s) 989
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 6 cut(s) 798, 846, 851, 899, 990, 1230
Zsp2I ATGCAT 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.