MD01G1205800.v1.1

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
30081112 .. 30084140
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1205800.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGAATAGCAGCGTTGACACTATCAACGCCGCCGCCACCGCCATCGTCTCCGCCGAAGCTCGCGCCCAGCCCACGACCGTCTCTAAAAGAAGATGGGGAAGCTGCTGGAGCCTATATTGGTGCTTCGGGTCACATAAAAATAACAAGCGAATTGGTCATGCTGTCCTCGTTCCAGAGCCTGTAGTGCCAGGAGCTGCAGTTTCTACCATTGGTAACCAAACAATCTCCACCACAATTGTATTACCATTCATTGCCCCTCCATCTTCTCCTGCATCTTTCCTCGCATCCGATCCACCATCCGCTACCCAATCACCTGCTGGATATCTGTCCCTCACTTCCCTTTCTGCCAATGCCTACTCTTCTTGTGAACCTGCATCCATGTTTTCCATAGGCCCTTATGCATACGAGACACAGTTAGTGTCACCACCTGTATTCTCTACATTCAACACCGAACCATCTACGGCTCCATTCACTCCCCCTCCTGAATCCGTTCAGCCGACTACACCTTCATCCCCTGAAGTTCCATTTGCTCAACTTCTGTCGTCTTCACTGGACCGACAACGTAGAAATAGTAGTAACAACCAGAAGTTTCCACTGTCCCAATACGAATACCAGCCTTACCAACAATATCCAGGAAGTCCAGGTGGTCATCTCATATCACCTGGATCAGCAATATCAAATTCTGGAACATCTTCTCCTTTTCCGGACAGACACCCTATGCTTGAGTTTCGCATGGGGGAAGCTCCGAAGCTTTATGGTTTTGAGCATTTTACCACTCATAAGTGGGGTTCAAGGCTAGGTTCTGGATCATTGACACCAGATGGTGCGGGGCTAGGTTCCAGGCTAGGTTCTGGAACATTAACACCAGATGGCTATGAGCTAGGTTCAAGGCTAGGTTCTGGATGTTTGACCCCCAATGGTGTGGGAGTTGGTTCCAGGTTGGGTTCTGGATGTTTGACGCCTGATTGTACGGGGCCAGCCTCTAGAGACGGTTTCCTTGTGGAGTACCAGATTTCTGATGTGGCATCCCTGGCCAACTCAGAGAGTGGATGTCACAATGGTGGAACTGTATTTGATCACAGGGTGTCATTTGAATTGACTGGTGAAGATGTTGCATGCTGTCTTGCAAATAAAGCATTAAGAACTGCAACGGAATCTTCAAATGATATAGCAGCAGAATACGCAATTGAAAAAGAAGCGTTATCAACAGATTCCAACAATCACCATGAGTTTAATGTTGAGGAAAGTTTGAGTAGAATTCCTGAAAATACTTCAGGAGAAGGGGAAGATCAAGGTTACCGGAAGCAAAGATCCATCACACTTGGTTCGACAAAGGAGTTTAATTTTGATAACACAAAAGATGAAGTTTCGAGTAAGACCAACATTGGCTCGGAATGGTGGGCTAACAAAAATGTTGCTGCTAAGGAATCTAAGCCTTGTAATGACTGGACTTTCTTTCCGATTCTACAACCAGGAGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

495

Amino Acids

52.55

Weight (kDa)

5.29

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011979)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 2 cut(s) 322, 379
AccB7I CCANNNNNTGG 1 cut(s) 1478
AccII CGCG 1 cut(s) 63
AccIII TCCGGA 1 cut(s) 703
AciI CCGC 6 cut(s) 30, 33, 39, 51, 300, 827
AclWI GGATC 4 cut(s) 284, 673, 814, 1305
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 2 cut(s) 679, 1257
AcuI CTGAAG 2 cut(s) 537, 1257
AcyI GRCGYC 1 cut(s) 959
AdeI CACNNNGTG 1 cut(s) 1084
AfaI GTAC 2 cut(s) 970, 1007
AfiI CCNNNNNNNGG 1 cut(s) 1478
AgsI TTSAA 6 cut(s) 445, 792, 888, 1094, 1161, 1190
AjnI CCWGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
AleI CACNNNNGTG 1 cut(s) 1059
AloI GAACNNNNNNTCC 2 cut(s) 679, 711
AluBI AGCT 6 cut(s) 59, 102, 194, 743, 751, 880
AluI AGCT 6 cut(s) 59, 102, 194, 743, 751, 880
Alw26I GTCTC 4 cut(s) 52, 85, 401, 981
AlwI GGATC 4 cut(s) 284, 673, 814, 1305
AlwNI CAGNNNCTG 2 cut(s) 179, 194
Aor13HI TCCGGA 1 cut(s) 703
AoxI GGCC 3 cut(s) 391, 974, 1032
ApeKI GCWGC 5 cut(s) 9, 102, 194, 1172, 1418
ApoI RAATTY 2 cut(s) 679, 1257
Asp700I GAANNNNTTC 2 cut(s) 489, 691
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 392, 553, 974
AsuHPI GGTGA 5 cut(s) 303, 414, 651, 1115, 1214
AvaII GGWCC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 1034
BbsI GAAGAC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 21, 89, 181, 1184, 1405
BccI CCATC 8 cut(s) 50, 87, 268, 304, 463, 815, 863, 1322
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
BclI TGATCA 1 cut(s) 1075
BcoDI GTCTC 4 cut(s) 52, 85, 401, 981
BfaI CTAG 6 cut(s) 797, 833, 845, 881, 893, 984
BfmI CTRYAG 2 cut(s) 180, 195
BfuAI ACCTGC 2 cut(s) 322, 379
BisI GCNGC 7 cut(s) 10, 30, 33, 103, 195, 1173, 1419
BlsI GCNGC 7 cut(s) 11, 31, 34, 104, 196, 1174, 1420
Bme1390I CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 392, 553, 974
BmiI GGNNCC 5 cut(s) 110, 465, 838, 934, 975
BmrFI CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
BmsI GCATC 4 cut(s) 281, 293, 383, 1034
BpiI GAAGAC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 1422
BpuEI CTTGAG 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 959
BsaJI CCNNGG 1 cut(s) 1029
BsaWI WCCGGW 2 cut(s) 703, 1299
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 463, 493, 679, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 1478
Bse1I ACTGG 3 cut(s) 555, 1105, 1451
Bse3DI GCAATG 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 703
BseBI CCWGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
BseDI CCNNGG 1 cut(s) 1029
BseGI GGATG 8 cut(s) 284, 296, 374, 509, 908, 956, 1025, 1055
BseLI CCNNNNNNNGG 1 cut(s) 1478
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 1053
BseNI ACTGG 3 cut(s) 555, 1105, 1451
BseXI GCAGC 5 cut(s) 21, 89, 181, 1184, 1405
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 3 cut(s) 393, 976, 1034
BsiEI CGRYCG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 704, 1300
BslFI GGGAC 2 cut(s) 313, 583
BslI CCNNNNNNNGG 1 cut(s) 1478
BsmAI GTCTC 4 cut(s) 52, 85, 401, 981
BsmBI CGTCTC 3 cut(s) 52, 85, 981
BsmFI GGGAC 2 cut(s) 313, 583
BsnI GGCC 3 cut(s) 393, 976, 1034
Bsp13I TCCGGA 1 cut(s) 703
Bsp143I GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
BspACI CCGC 6 cut(s) 30, 33, 39, 51, 300, 827
BspANI GGCC 3 cut(s) 393, 976, 1034
BspCNI CTCAG 1 cut(s) 1052
BspEI TCCGGA 1 cut(s) 703
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 5 cut(s) 110, 465, 838, 934, 975
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 2 cut(s) 322, 379
BspPI GGATC 4 cut(s) 284, 673, 814, 1305
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 3 cut(s) 555, 1105, 1451
BssECI CCNNGG 1 cut(s) 1029
BssMI GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
BssNI GRCGYC 1 cut(s) 959
Bst2UI CCWGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
Bst4CI ACNGT 5 cut(s) 79, 414, 597, 992, 1069
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 959
BstC8I GCNNGC 3 cut(s) 61, 978, 1117
BstDEI CTNAG 3 cut(s) 1039, 1422, 1431
BstEII GGTNACC 2 cut(s) 212, 1295
BstF5I GGATG 8 cut(s) 284, 296, 374, 509, 908, 956, 1025, 1055
BstFNI CGCG 1 cut(s) 63
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 6 cut(s) 292, 668, 809, 1078, 1291, 1313
BstMAI GTCTC 4 cut(s) 52, 85, 401, 981
BstMBI GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 6 cut(s) 38, 108, 184, 1031, 1133, 1181
BstNI CCWGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
BstNSI RCATGY 1 cut(s) 1119
BstPI GGTNACC 2 cut(s) 212, 1295
BstSCI CCNGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
BstSFI CTRYAG 2 cut(s) 180, 195
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 5 cut(s) 21, 89, 181, 1184, 1405
BstV2I GAAGAC 1 cut(s) 537
BstX2I RGATCY 1 cut(s) 1310
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 1 cut(s) 1310
BsuRI GGCC 3 cut(s) 393, 976, 1034
BtsCI GGATG 8 cut(s) 284, 296, 374, 509, 908, 956, 1025, 1055
BtsIMutI CAGTG 2 cut(s) 548, 593
BveI ACCTGC 2 cut(s) 322, 379
Cac8I GCNNGC 3 cut(s) 61, 978, 1117
CaiI CAGNNNCTG 2 cut(s) 179, 194
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 392, 553, 974
CseI GACGC 1 cut(s) 967
Csp6I GTAC 2 cut(s) 969, 1006
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 5 cut(s) 158, 379, 733, 1116, 1226
CviQI GTAC 2 cut(s) 969, 1006
DdeI CTNAG 3 cut(s) 1039, 1422, 1431
DpnI GATC 6 cut(s) 291, 667, 808, 1077, 1290, 1312
DpnII GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
DraIII CACNNNGTG 1 cut(s) 1084
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
EciI GGCGGA 1 cut(s) 40
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 553
Eco57I CTGAAG 2 cut(s) 537, 1257
Eco91I GGTNACC 2 cut(s) 212, 1295
EcoO109I RGGNCCY 1 cut(s) 392
EcoO65I GGTNACC 2 cut(s) 212, 1295
EcoRI GAATTC 1 cut(s) 1257
EcoRII CCWGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
EcoRV GATATC 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 403
Esp3I CGTCTC 3 cut(s) 52, 85, 981
FaeI CATG 5 cut(s) 161, 382, 736, 1119, 1229
FaqI GGGAC 2 cut(s) 313, 583
FatI CATG 5 cut(s) 157, 378, 732, 1115, 1225
FauI CCCGC 1 cut(s) 820
FbaI TGATCA 1 cut(s) 1075
Fnu4HI GCNGC 7 cut(s) 10, 30, 33, 103, 195, 1173, 1419
FokI GGATG 8 cut(s) 271, 283, 361, 496, 915, 963, 1012, 1062
Fsp4HI GCNGC 7 cut(s) 10, 30, 33, 103, 195, 1173, 1419
FspBI CTAG 6 cut(s) 797, 833, 845, 881, 893, 984
GlaI GCGC 1 cut(s) 64
GluI GCNGC 7 cut(s) 10, 30, 33, 103, 195, 1173, 1419
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 3 cut(s) 393, 976, 1034
HapII CCGG 2 cut(s) 704, 1300
HgaI GACGC 1 cut(s) 967
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 5 cut(s) 161, 382, 736, 1119, 1229
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 749
HinfI GANTC 5 cut(s) 485, 1154, 1211, 1427, 1462
HpaII CCGG 2 cut(s) 704, 1300
HphI GGTGA 5 cut(s) 303, 414, 651, 1115, 1214
Hpy166II GTNNAC 2 cut(s) 16, 368
Hpy188I TCNGA 6 cut(s) 289, 747, 1018, 1042, 1393, 1461
Hpy8I GTNNAC 2 cut(s) 16, 368
HpyAV CCTTC 2 cut(s) 516, 1274
HpyCH4III ACNGT 5 cut(s) 79, 414, 597, 992, 1069
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 7 cut(s) 197, 272, 374, 401, 1115, 1127, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 108, 184, 1031, 1133, 1181
HpyF3I CTNAG 3 cut(s) 1039, 1422, 1431
HpySE526I ACGT 1 cut(s) 562
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 5 cut(s) 161, 382, 736, 1119, 1229
HspAI GCGC 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
LmnI GCTCC 4 cut(s) 108, 191, 469, 748
Lsp1109I GCAGC 5 cut(s) 21, 89, 181, 1184, 1405
LweI GCATC 4 cut(s) 281, 293, 383, 1034
MaeI CTAG 6 cut(s) 797, 833, 845, 881, 893, 984
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 6 cut(s) 129, 212, 420, 575, 1052, 1295
MalI GATC 6 cut(s) 291, 667, 808, 1077, 1290, 1312
MboI GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
MboII GAAGA 8 cut(s) 102, 255, 351, 537, 684, 1118, 1149, 1298
MfeI CAATTG 2 cut(s) 234, 1185
MflI RGATCY 1 cut(s) 1310
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 7 cut(s) 150, 234, 679, 1094, 1185, 1257, 1342
MluNI TGGCCA 1 cut(s) 1034
MmeI TCCRAC 2 cut(s) 1239, 1459
MnlI CCTC 7 cut(s) 176, 267, 290, 341, 489, 991, 1234
Mox20I TGGCCA 1 cut(s) 1034
Mph1103I ATGCAT 1 cut(s) 403
MroI TCCGGA 1 cut(s) 703
MroXI GAANNNNTTC 2 cut(s) 489, 691
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 4 cut(s) 860, 1139, 1233, 1341
MslI CAYNNNNRTG 1 cut(s) 1059
Msp20I TGGCCA 1 cut(s) 1034
MspI CCGG 2 cut(s) 704, 1300
MspR9I CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
MunI CAATTG 2 cut(s) 234, 1185
MvaI CCWGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 6 cut(s) 38, 108, 184, 1031, 1133, 1181
NdeII GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
NlaIII CATG 5 cut(s) 161, 382, 736, 1119, 1229
NlaIV GGNNCC 5 cut(s) 110, 465, 838, 934, 975
NmuCI GTSAC 3 cut(s) 129, 420, 1052
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 1119
OliI CACNNNNGTG 1 cut(s) 1059
PaeI GCATGC 1 cut(s) 1119
PaqCI CACCTGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 489, 691
PfeI GAWTC 5 cut(s) 485, 1154, 1211, 1427, 1462
PflMI CCANNNNNTGG 1 cut(s) 1478
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 7 cut(s) 11, 31, 34, 104, 196, 1174, 1420
Psp6I CCWGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
PspEI GGTNACC 2 cut(s) 212, 1295
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
PspN4I GGNNCC 5 cut(s) 110, 465, 838, 934, 975
PspPI GGNCC 3 cut(s) 392, 553, 974
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 2 cut(s) 179, 194
PsuI RGATCY 1 cut(s) 1310
RsaI GTAC 2 cut(s) 970, 1007
RsaNI GTAC 2 cut(s) 969, 1006
RseI CAYNNNNRTG 1 cut(s) 1059
SaqAI TTAA 4 cut(s) 860, 1139, 1233, 1341
SatI GCNGC 7 cut(s) 10, 30, 33, 103, 195, 1173, 1419
Sau3AI GATC 6 cut(s) 289, 665, 806, 1075, 1288, 1310
Sau96I GGNCC 3 cut(s) 392, 553, 974
ScrFI CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
SfaNI GCATC 4 cut(s) 281, 293, 383, 1034
SfcI CTRYAG 2 cut(s) 180, 195
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 1059
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SphI GCATGC 1 cut(s) 1119
Sse9I AATT 7 cut(s) 150, 234, 679, 1094, 1185, 1257, 1342
SsiI CCGC 6 cut(s) 30, 33, 39, 51, 300, 827
SspMI CTAG 6 cut(s) 797, 833, 845, 881, 893, 984
StyD4I CCNGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
TaaI ACNGT 5 cut(s) 79, 414, 597, 992, 1069
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 1328, 1370
TaqII GACCGA 1 cut(s) 570
TasI AATT 7 cut(s) 150, 234, 679, 1094, 1185, 1257, 1342
TauI GCSGC 2 cut(s) 32, 35
TfiI GAWTC 5 cut(s) 485, 1154, 1211, 1427, 1462
Tru1I TTAA 4 cut(s) 860, 1139, 1233, 1341
Tru9I TTAA 4 cut(s) 860, 1139, 1233, 1341
TscAI CASTG 2 cut(s) 555, 600
TseFI GTSAC 3 cut(s) 129, 420, 1052
TseI GCWGC 5 cut(s) 9, 102, 194, 1172, 1418
Tsp45I GTSAC 3 cut(s) 129, 420, 1052
TspDTI ATGAA 4 cut(s) 17, 238, 498, 1377
TspGWI ACGGA 2 cut(s) 478, 1166
TspRI CASTG 2 cut(s) 555, 600
Van91I CCANNNNNTGG 1 cut(s) 1478
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 2 cut(s) 679, 1257
XbaI TCTAGA 1 cut(s) 983
XceI RCATGY 1 cut(s) 1119
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmnI GAANNNNTTC 2 cut(s) 489, 691
XspI CTAG 6 cut(s) 797, 833, 845, 881, 893, 984
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.