pycom07g25120

Hydroxyproline-rich glycoprotein family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
25551705 .. 25554187
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25120.2

Sequence Viewer

Length: 1485 bp
ATGAATAGCAGCGTTGACACTATCAACGCCGCCGCCACCGCCATCGTCTCTGCCGAAGCTCGCGCCCAGCCCACAAACATCTCTAAAAGAAGATGGGGAAGCTGGTGGAGCCTATATTGGTGCTTCGGGTCACATAAAACTAGCAAGCGAATTGGTCATGCTGTCCTCGTTCCCGAGCCTGTAGTGCCAGGAGCTGCAGTTTCAACCTCTGATAACCAAACAACCTCCACCGCAATTGTATTACCCTTCATTGCCCCTCCATCTTCTCCTGCATCTTTCCTTCCATCCGATCCACCGTCTGCTTCCCAATCACCTGCTGGATTTCTGTCCTTCACATCCCTTTCTGTAAATGCCTACTCTTCGGGTGAACCTGCATCCATGTTTTCCATTGGCCCTTATGCATATGAGACACAGTTAGTGTCACCACCTGTATTCTCTACATTCAACACTGAACCATCTACTGCTCCATTCACTCCCCCTCCCGAATCCGTTCAGCTGACTACACCTTCATCCCCTGAAGTGCCATTTGCTCAACTTCTGTCATCTTCATTGGACCGACAACGTAGAAACAGTAGCAACAACCAGAAGTTTCCACTGTCCCAATACGAATACCAGCCTTACCAACAATATCCGGGAAGTCCAGGTGGTGATCTTATATCACCAGGATCAGCAATATCGAATTCAGGAACATCTTCTCCGTTCCCAGACAGACACCCTATGCTTGAGTTTCGCATGGGGGAAGGTCCCAAACTCTATGGATTTGACCATTTTACCAATCATAAGTGGGGTTCAAGGCTAGGTTCTGGATCATTGACACCAGATGGTGCGGGGCTGGGTTCCAGGCTAGGTTCTGGAACATTAACACCAGATGGCTATGAGCTAGGTTCAAGGCTAGGTTCCGGATGTTTGACCCCCAATGGTGTGGGAGTTGGTTCCAGGATGAGTTCTGGATGTTTGACGCCTGATGGTACGGGGCCAGCCTCAAGAGACGGTTTCCATATGGAGAACCAGATTTCTGAGGTGGCATCCCTGGCCAACACAGAGAGTGGATGTCACAATGGTGGAACTATATTTGATCACAGGGTGTCATTTGTATTGACTGGTGAAGATGTTGCATGCTGTCTTGCGAATAAAGCATTGAGAACTGCAACGGAATCTTCAAATGATATAGCAGCAGAAAACTCAATTGAAACAGATGGGTTATTAACAGACTCCAACAATCACCGCGAGTTTAATGTGGAGGAAAGTTTGAGTAGAATTCCTGAAAATGCTTCGGGAGAAGGGGAGGATCAAGGTTACCGGAAGCAAAGATCCATCACACTTGGGTCGACAAAGGAGTTTAATTTTGATTACACAAAAGCTGAAGTTCCGAGTAAGTCCAACATCGGCTCAGAATGGTGGGCTAACAAAAATGTTGCTGCTAAGGAATCTAAGCCTTGCAATGACTGGACTTTCTTTCCGATTCTACAACCCGGAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

495

Amino Acids

52.65

Weight (kDa)

5.29

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011979)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 2 cut(s) 322, 379
AccI GTMKAC 1 cut(s) 1328
AccII CGCG 2 cut(s) 63, 1227
AccIII TCCGGA 1 cut(s) 899
AciI CCGC 6 cut(s) 30, 33, 39, 231, 827, 1225
AclWI GGATC 5 cut(s) 284, 673, 814, 1296, 1305
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 2 cut(s) 679, 1257
AcuI CTGAAG 2 cut(s) 537, 1383
AcyI GRCGYC 1 cut(s) 959
AdeI CACNNNGTG 1 cut(s) 1084
AfaI GTAC 1 cut(s) 970
AgsI TTSAA 6 cut(s) 204, 445, 792, 888, 1161, 1190
AjnI CCWGG 6 cut(s) 187, 640, 661, 839, 935, 1029
AleI CACNNNNGTG 1 cut(s) 1059
AloI GAACNNNNNNTCC 2 cut(s) 679, 711
AluBI AGCT 6 cut(s) 59, 102, 194, 496, 880, 1361
AluI AGCT 6 cut(s) 59, 102, 194, 496, 880, 1361
Alw26I GTCTC 3 cut(s) 52, 401, 981
AlwI GGATC 5 cut(s) 284, 673, 814, 1296, 1305
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 899
AoxI GGCC 3 cut(s) 391, 974, 1032
ApeKI GCWGC 4 cut(s) 9, 194, 1172, 1418
ApoI RAATTY 2 cut(s) 679, 1257
Asp700I GAANNNNTTC 2 cut(s) 489, 691
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 4 cut(s) 392, 553, 743, 974
AsuC2I CCSGG 2 cut(s) 633, 1473
AsuHPI GGTGA 7 cut(s) 303, 377, 414, 651, 659, 1115, 1214
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 553, 743
BalI TGGCCA 1 cut(s) 1034
BbvI GCAGC 4 cut(s) 21, 181, 1184, 1405
BciT130I CCWGG 6 cut(s) 189, 642, 663, 841, 937, 1031
BclI TGATCA 1 cut(s) 1075
BcnI CCSGG 2 cut(s) 633, 1473
BcoDI GTCTC 3 cut(s) 52, 401, 981
BfaI CTAG 5 cut(s) 141, 797, 845, 881, 893
BfmI CTRYAG 2 cut(s) 180, 195
BfuAI ACCTGC 2 cut(s) 322, 379
BisI GCNGC 6 cut(s) 10, 30, 33, 195, 1173, 1419
BlsI GCNGC 6 cut(s) 11, 31, 34, 196, 1174, 1420
Bme1390I CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
Bme18I GGWCC 2 cut(s) 553, 743
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 4 cut(s) 392, 553, 743, 974
BmiI GGNNCC 6 cut(s) 110, 745, 838, 898, 934, 975
BmrFI CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
BmsI GCATC 3 cut(s) 281, 383, 1034
Bpu10I CCTNAGC 1 cut(s) 1422
BpuEI CTTGAG 2 cut(s) 743, 967
BpuMI CCSGG 2 cut(s) 633, 1473
BsaHI GRCGYC 1 cut(s) 959
BsaJI CCNNGG 1 cut(s) 1029
BsaWI WCCGGW 2 cut(s) 899, 1299
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 463, 493, 679, 709
Bse1I ACTGG 2 cut(s) 1105, 1451
Bse3DI GCAATG 2 cut(s) 249, 1447
BseAI TCCGGA 1 cut(s) 899
BseBI CCWGG 6 cut(s) 189, 642, 663, 841, 937, 1031
BseDI CCNNGG 1 cut(s) 1029
BseGI GGATG 9 cut(s) 284, 335, 374, 509, 908, 945, 956, 1025, 1055
BseMI GCAATG 2 cut(s) 249, 1447
BseMII CTCAG 2 cut(s) 1008, 1404
BseNI ACTGG 2 cut(s) 1105, 1451
BseXI GCAGC 4 cut(s) 21, 181, 1184, 1405
BseYI CCCAGC 2 cut(s) 66, 832
Bsh1236I CGCG 2 cut(s) 63, 1227
BshFI GGCC 3 cut(s) 393, 976, 1034
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 4 cut(s) 632, 900, 1300, 1473
BslFI GGGAC 2 cut(s) 583, 729
BsmAI GTCTC 3 cut(s) 52, 401, 981
BsmBI CGTCTC 2 cut(s) 52, 981
BsmFI GGGAC 2 cut(s) 583, 729
BsnI GGCC 3 cut(s) 393, 976, 1034
BsoBI CYCGRG 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 899
Bsp143I GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
BspACI CCGC 6 cut(s) 30, 33, 39, 231, 827, 1225
BspANI GGCC 3 cut(s) 393, 976, 1034
BspCNI CTCAG 2 cut(s) 1009, 1403
BspEI TCCGGA 1 cut(s) 899
BspFNI CGCG 2 cut(s) 63, 1227
BspLI GGNNCC 6 cut(s) 110, 745, 838, 898, 934, 975
BspMAI CTGCAG 1 cut(s) 199
BspMI ACCTGC 2 cut(s) 322, 379
BspPI GGATC 5 cut(s) 284, 673, 814, 1296, 1305
BsrDI GCAATG 2 cut(s) 249, 1447
BsrI ACTGG 2 cut(s) 1105, 1451
BssECI CCNNGG 1 cut(s) 1029
BssMI GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
BssNI GRCGYC 1 cut(s) 959
Bst2UI CCWGG 6 cut(s) 189, 642, 663, 841, 937, 1031
Bst4CI ACNGT 5 cut(s) 297, 414, 572, 597, 992
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 61, 146, 978, 1117
BstDEI CTNAG 4 cut(s) 1017, 1390, 1422, 1431
BstEII GGTNACC 1 cut(s) 1295
BstF5I GGATG 9 cut(s) 284, 335, 374, 509, 908, 945, 956, 1025, 1055
BstFNI CGCG 2 cut(s) 63, 1227
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 7 cut(s) 292, 652, 668, 809, 1078, 1291, 1313
BstMAI GTCTC 3 cut(s) 52, 401, 981
BstMBI GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
BstMWI GCNNNNNNNGC 5 cut(s) 38, 108, 184, 1031, 1133
BstNI CCWGG 6 cut(s) 189, 642, 663, 841, 937, 1031
BstNSI RCATGY 1 cut(s) 1119
BstPI GGTNACC 1 cut(s) 1295
BstSCI CCNGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
BstSFI CTRYAG 2 cut(s) 180, 195
BstUI CGCG 2 cut(s) 63, 1227
BstV1I GCAGC 4 cut(s) 21, 181, 1184, 1405
BstX2I RGATCY 1 cut(s) 1310
BstXI CCANNNNNNTGG 1 cut(s) 922
BstYI RGATCY 1 cut(s) 1310
BsuRI GGCC 3 cut(s) 393, 976, 1034
BtsCI GGATG 9 cut(s) 284, 335, 374, 509, 908, 945, 956, 1025, 1055
BtsIMutI CAGTG 2 cut(s) 447, 593
BveI ACCTGC 2 cut(s) 322, 379
Cac8I GCNNGC 4 cut(s) 61, 146, 978, 1117
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 392, 553, 743, 974
CseI GACGC 1 cut(s) 967
Csp6I GTAC 1 cut(s) 969
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 4 cut(s) 158, 379, 733, 1116
CviQI GTAC 1 cut(s) 969
DdeI CTNAG 4 cut(s) 1017, 1390, 1422, 1431
DpnI GATC 7 cut(s) 291, 651, 667, 808, 1077, 1290, 1312
DpnII GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
DraIII CACNNNGTG 1 cut(s) 1084
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 553, 743
Eco57I CTGAAG 2 cut(s) 537, 1383
Eco88I CYCGRG 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 1295
EcoO109I RGGNCCY 1 cut(s) 743
EcoO65I GGTNACC 1 cut(s) 1295
EcoRI GAATTC 2 cut(s) 679, 1257
EcoRII CCWGG 6 cut(s) 187, 640, 661, 839, 935, 1029
EcoT22I ATGCAT 1 cut(s) 403
Esp3I CGTCTC 2 cut(s) 52, 981
FaeI CATG 4 cut(s) 161, 382, 736, 1119
FaqI GGGAC 2 cut(s) 583, 729
FatI CATG 4 cut(s) 157, 378, 732, 1115
FauI CCCGC 1 cut(s) 820
FauNDI CATATG 2 cut(s) 403, 999
FbaI TGATCA 1 cut(s) 1075
FblI GTMKAC 1 cut(s) 1328
Fnu4HI GCNGC 6 cut(s) 10, 30, 33, 195, 1173, 1419
FokI GGATG 9 cut(s) 271, 322, 361, 496, 915, 952, 963, 1012, 1062
Fsp4HI GCNGC 6 cut(s) 10, 30, 33, 195, 1173, 1419
FspBI CTAG 5 cut(s) 141, 797, 845, 881, 893
GlaI GCGC 1 cut(s) 64
GluI GCNGC 6 cut(s) 10, 30, 33, 195, 1173, 1419
GsaI CCCAGC 2 cut(s) 70, 836
HaeIII GGCC 3 cut(s) 393, 976, 1034
HapII CCGG 4 cut(s) 632, 900, 1300, 1473
HgaI GACGC 1 cut(s) 967
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 959
Hin1II CATG 4 cut(s) 161, 382, 736, 1119
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 2 cut(s) 16, 1329
HindII GTYRAC 2 cut(s) 16, 1329
HinfI GANTC 5 cut(s) 485, 1154, 1211, 1427, 1462
HpaII CCGG 4 cut(s) 632, 900, 1300, 1473
HphI GGTGA 7 cut(s) 303, 377, 414, 651, 659, 1115, 1214
Hpy166II GTNNAC 3 cut(s) 16, 368, 1329
Hpy188I TCNGA 6 cut(s) 211, 289, 1018, 1371, 1393, 1461
Hpy8I GTNNAC 3 cut(s) 16, 368, 1329
HpyAV CCTTC 6 cut(s) 256, 290, 340, 516, 734, 1274
HpyCH4III ACNGT 5 cut(s) 297, 414, 572, 597, 992
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 7 cut(s) 197, 272, 374, 401, 1115, 1148, 1440
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 108, 184, 1031, 1133
HpyF3I CTNAG 4 cut(s) 1017, 1390, 1422, 1431
HpySE526I ACGT 1 cut(s) 562
Hsp92I GRCGYC 1 cut(s) 959
Hsp92II CATG 4 cut(s) 161, 382, 736, 1119
HspAI GCGC 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 899
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
LmnI GCTCC 3 cut(s) 108, 191, 469
Lsp1109I GCAGC 4 cut(s) 21, 181, 1184, 1405
LweI GCATC 3 cut(s) 281, 383, 1034
MaeI CTAG 5 cut(s) 141, 797, 845, 881, 893
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 4 cut(s) 129, 420, 1052, 1295
MalI GATC 7 cut(s) 291, 651, 667, 808, 1077, 1290, 1312
MboI GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
MboII GAAGA 7 cut(s) 102, 255, 351, 537, 684, 1118, 1149
MfeI CAATTG 2 cut(s) 234, 1185
MflI RGATCY 1 cut(s) 1310
MlsI TGGCCA 1 cut(s) 1034
MluCI AATT 6 cut(s) 150, 234, 679, 1185, 1257, 1342
MluNI TGGCCA 1 cut(s) 1034
MlyI GAGTC 1 cut(s) 1205
MmeI TCCRAC 2 cut(s) 1239, 1404
MnlI CCTC 9 cut(s) 176, 217, 235, 267, 489, 991, 1012, 1234, 1279
Mox20I TGGCCA 1 cut(s) 1034
Mph1103I ATGCAT 1 cut(s) 403
MroI TCCGGA 1 cut(s) 899
MroXI GAANNNNTTC 2 cut(s) 489, 691
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 4 cut(s) 860, 1205, 1233, 1341
MslI CAYNNNNRTG 1 cut(s) 1059
Msp20I TGGCCA 1 cut(s) 1034
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 4 cut(s) 632, 900, 1300, 1473
MspR9I CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
MunI CAATTG 2 cut(s) 234, 1185
MvaI CCWGG 6 cut(s) 189, 642, 663, 841, 937, 1031
MvnI CGCG 2 cut(s) 63, 1227
MwoI GCNNNNNNNGC 5 cut(s) 38, 108, 184, 1031, 1133
NciI CCSGG 2 cut(s) 633, 1473
NdeI CATATG 2 cut(s) 403, 999
NdeII GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
NlaIII CATG 4 cut(s) 161, 382, 736, 1119
NlaIV GGNNCC 6 cut(s) 110, 745, 838, 898, 934, 975
NmuCI GTSAC 3 cut(s) 129, 420, 1052
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 1119
OliI CACNNNNGTG 1 cut(s) 1059
PaeI GCATGC 1 cut(s) 1119
PaqCI CACCTGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 2 cut(s) 489, 691
PfeI GAWTC 4 cut(s) 485, 1154, 1427, 1462
PfoI TCCNGGA 2 cut(s) 631, 935
PkrI GCNGC 6 cut(s) 11, 31, 34, 196, 1174, 1420
PleI GAGTC 1 cut(s) 1205
PpsI GAGTC 1 cut(s) 1205
PpuMI RGGWCCY 1 cut(s) 743
Psp5II RGGWCCY 1 cut(s) 743
Psp6I CCWGG 6 cut(s) 187, 640, 661, 839, 935, 1029
PspEI GGTNACC 1 cut(s) 1295
PspFI CCCAGC 2 cut(s) 66, 832
PspGI CCWGG 6 cut(s) 187, 640, 661, 839, 935, 1029
PspN4I GGNNCC 6 cut(s) 110, 745, 838, 898, 934, 975
PspPI GGNCC 4 cut(s) 392, 553, 743, 974
PspPPI RGGWCCY 1 cut(s) 743
PstI CTGCAG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 1310
PvuII CAGCTG 1 cut(s) 496
RsaI GTAC 1 cut(s) 970
RsaNI GTAC 1 cut(s) 969
RseI CAYNNNNRTG 1 cut(s) 1059
SalI GTCGAC 1 cut(s) 1327
SaqAI TTAA 4 cut(s) 860, 1205, 1233, 1341
SatI GCNGC 6 cut(s) 10, 30, 33, 195, 1173, 1419
Sau3AI GATC 7 cut(s) 289, 649, 665, 806, 1075, 1288, 1310
Sau96I GGNCC 4 cut(s) 392, 553, 743, 974
SchI GAGTC 1 cut(s) 1205
ScrFI CCNGG 8 cut(s) 189, 633, 642, 663, 841, 937, 1031, 1473
SfaNI GCATC 3 cut(s) 281, 383, 1034
SfcI CTRYAG 2 cut(s) 180, 195
SinI GGWCC 2 cut(s) 553, 743
SmiMI CAYNNNNRTG 1 cut(s) 1059
SmlI CTYRAG 2 cut(s) 722, 982
SmoI CTYRAG 2 cut(s) 722, 982
SphI GCATGC 1 cut(s) 1119
Sse9I AATT 6 cut(s) 150, 234, 679, 1185, 1257, 1342
SsiI CCGC 6 cut(s) 30, 33, 39, 231, 827, 1225
SspMI CTAG 5 cut(s) 141, 797, 845, 881, 893
StyD4I CCNGG 8 cut(s) 187, 631, 640, 661, 839, 935, 1029, 1471
TaaI ACNGT 5 cut(s) 297, 414, 572, 597, 992
TaiI ACGT 1 cut(s) 565
TaqI TCGA 2 cut(s) 677, 1328
TaqII GACCGA 1 cut(s) 570
TasI AATT 6 cut(s) 150, 234, 679, 1185, 1257, 1342
TauI GCSGC 2 cut(s) 32, 35
TfiI GAWTC 4 cut(s) 485, 1154, 1427, 1462
Tru1I TTAA 4 cut(s) 860, 1205, 1233, 1341
Tru9I TTAA 4 cut(s) 860, 1205, 1233, 1341
TscAI CASTG 2 cut(s) 454, 600
TseFI GTSAC 3 cut(s) 129, 420, 1052
TseI GCWGC 4 cut(s) 9, 194, 1172, 1418
Tsp45I GTSAC 3 cut(s) 129, 420, 1052
TspDTI ATGAA 4 cut(s) 17, 238, 498, 537
TspGWI ACGGA 3 cut(s) 478, 687, 1166
TspRI CASTG 2 cut(s) 454, 600
VpaK11BI GGWCC 2 cut(s) 553, 743
XapI RAATTY 2 cut(s) 679, 1257
XceI RCATGY 1 cut(s) 1119
XcmI CCANNNNNNNNNTGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 1328
XmnI GAANNNNTTC 2 cut(s) 489, 691
XspI CTAG 5 cut(s) 141, 797, 845, 881, 893
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.