AT4G25980

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015297
Physical Location & Seq
Forward (+)
13189393 .. 13191507
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25980.1

Sequence Viewer

Length: 981 bp
ATGGTTTGGGCAAATGCTAAGATGAGGCTAGCTTTGTCTCTTGTTACGGTTTTCTTCGGCATCTCTCTTGCTAATCTTGAAGTCGGATTTTACTCCAATACATGCCCTCAAGCCGAGTCAATCGTTAAGAGGGTTGTCTCAGGGGCTGCTCTTTCCGACCCTAACCTCCCAGCCATACTTCTACGGCTCCATTTCCATGATTGCTTTGTTGAGGGATGTGATGGCTCGATCCTCGTGAACAACGGAGCAATCTCTGAAAAGAATGCATTTGGACATGAAGGCGTTAGAGGATTTGAGATAGTAGAAGCCGTCAAAGCCGAGCTTGAAGCTGCATGCCCCGGTGTTGTCTCCTGCTCAGACATTGTTGCCTTGGCTGCACGTGATGCCATATCTTTGGCGAATGGACCGGCGTATGAGGTGCCAACTGGGCGGAGAGATGGTCGGGTTTCGAACATGTCATTGGCTAAGGACATGCCGGAGGTGAGTGACTCGATTGAGATACTAAAGGCTAAGTTCATGCAGAAAGGACTCAACGCCAAAGACCTCGTGCTTCTCAGTGCTGCTCACACTATCGGAACAACGGCCTGCTTCTTCATGTCCAAACGGCTCTATGATTTCTTACCTGGTGGCCAACCTGACCCGACTATCAATCCAACATTCCTACCCGAATTAACCACTCAGTGCCCACAAAATGGTGACATAAACGTCCGTTTACCAATTGACCGGTTCAGCGAACGGCTATTCGACAAGCAGATTCTGCAAAACATAAAGGATGGTTTTGCTGTGCTTCAGACCGACGCAGGTCTTTACGAGGATGTAACGACCAGACAGGTCGTGGATTCCTATCTTGGGATGCTAAATCCATTCTTTGGGCCAACATTCGAGTCTGATTTCGTTAAGGCGATCGTAAAGATGGGGAAGATTGGTGTGAAGACTGGTTTCAAAGGGGAGATTCGACGGGTTTGCTCGGCCTTCAATTGA

Protein Analysis

326

Amino Acids

35.36

Weight (kDa)

5.68

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 282 8.5e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25980 AT4G25980
fragaria_vesca FvH4_4g07570 FvH4_5g30550
malus_domestica MD08G1222600.v1.1
prunus_persica Prupe.1G560400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225371
rosa_laevigata RLG00000001822
rosa_multiflora Rmu_co8454263.1_g000001
rosa_rugosa Rorug04G0023000 Rorug07G0229100
rosa_samantha Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana Rw7G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 704
Acc36I ACCTGC 1 cut(s) 791
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 2 cut(s) 692, 869
AciI CCGC 1 cut(s) 430
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 773
AcvI CACGTG 1 cut(s) 380
AdeI CACNNNGTG 1 cut(s) 681
AfiI CCNNNNNNNGG 3 cut(s) 692, 849, 869
AflIII ACRYGT 1 cut(s) 453
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 4 cut(s) 80, 326, 943, 976
AjnI CCWGG 1 cut(s) 622
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 32, 322, 329
AluI AGCT 3 cut(s) 32, 322, 329
Alw26I GTCTC 3 cut(s) 42, 142, 352
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 2 cut(s) 146, 757
AoxI GGCC 4 cut(s) 582, 628, 872, 969
ApeKI GCWGC 4 cut(s) 146, 329, 374, 560
AsiGI ACCGGT 1 cut(s) 723
AspS9I GGNCC 2 cut(s) 404, 872
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 493, 707
AsuII TTCGAA 1 cut(s) 449
AsuNHI GCTAGC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 686
BalI TGGCCA 1 cut(s) 630
BanI GGYRCC 1 cut(s) 418
BauI CACGAG 2 cut(s) 233, 545
BbrPI CACGTG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 938
BbvI GCAGC 4 cut(s) 133, 316, 361, 547
BccI CCATC 4 cut(s) 215, 431, 767, 907
BceAI ACGGC 5 cut(s) 200, 293, 597, 620, 752
BcgI CGANNNNNNTGC 2 cut(s) 945, 979
BciT130I CCWGG 1 cut(s) 624
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 42, 142, 352
BfaI CTAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 791
BglI GCCNNNNNGGC 1 cut(s) 427
BisI GCNGC 4 cut(s) 147, 330, 375, 561
BlsI GCNGC 4 cut(s) 148, 331, 376, 562
Bme1390I CCNGG 2 cut(s) 339, 624
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 404, 872
BmiI GGNNCC 2 cut(s) 188, 420
BmrFI CCNGG 2 cut(s) 339, 624
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 3 cut(s) 69, 373, 843
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 435
BoxI GACNNNNGTC 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 938
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 380
BsaBI GATNNNNATC 1 cut(s) 843
BsaJI CCNNGG 2 cut(s) 337, 369
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 3 cut(s) 692, 849, 869
Bse118I RCCGGY 2 cut(s) 406, 723
Bse1I ACTGG 2 cut(s) 430, 940
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 2 cut(s) 337, 369
BseGI GGATG 4 cut(s) 221, 778, 820, 858
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 692, 849, 869
BseMII CTCAG 4 cut(s) 153, 369, 568, 692
BseNI ACTGG 2 cut(s) 430, 940
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 4 cut(s) 133, 316, 361, 547
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 906
BshFI GGCC 4 cut(s) 584, 630, 874, 971
BshNI GGYRCC 1 cut(s) 418
BshTI ACCGGT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 906
BsiSI CCGG 4 cut(s) 339, 407, 476, 724
BslI CCNNNNNNNGG 3 cut(s) 692, 849, 869
BsmAI GTCTC 3 cut(s) 42, 142, 352
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 4 cut(s) 584, 630, 874, 971
Bsp119I TTCGAA 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 2 cut(s) 228, 903
BspACI CCGC 1 cut(s) 430
BspANI GGCC 4 cut(s) 584, 630, 874, 971
BspCNI CTCAG 4 cut(s) 152, 368, 567, 691
BspLI GGNNCC 2 cut(s) 188, 420
BspMI ACCTGC 1 cut(s) 791
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 1 cut(s) 223
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 418
BsrFI RCCGGY 2 cut(s) 406, 723
BsrI ACTGG 2 cut(s) 430, 940
BssAI RCCGGY 2 cut(s) 406, 723
BssECI CCNNGG 2 cut(s) 337, 369
BssMI GATC 2 cut(s) 228, 903
BssSI CACGAG 2 cut(s) 233, 545
BssT1I CCWWGG 1 cut(s) 369
Bst2BI CACGAG 2 cut(s) 233, 545
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 49
BstAPI GCANNNNNTGC 2 cut(s) 383, 757
BstBAI YACGTR 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 30, 334, 586
BstDEI CTNAG 7 cut(s) 18, 139, 355, 465, 510, 554, 678
BstF5I GGATG 4 cut(s) 221, 778, 820, 858
BstKTI GATC 2 cut(s) 231, 906
BstMAI GTCTC 3 cut(s) 42, 142, 352
BstMBI GATC 2 cut(s) 228, 903
BstMCI CGRYCG 1 cut(s) 906
BstMWI GCNNNNNNNGC 5 cut(s) 314, 374, 383, 427, 757
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 4 cut(s) 105, 336, 457, 475
BstPAI GACNNNNGTC 1 cut(s) 801
BstSCI CCNGG 2 cut(s) 337, 622
BstSLI GKGCMC 1 cut(s) 686
BstV1I GCAGC 4 cut(s) 133, 316, 361, 547
BstV2I GAAGAC 1 cut(s) 938
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuRI GGCC 4 cut(s) 584, 630, 874, 971
BtsCI GGATG 4 cut(s) 221, 778, 820, 858
BtsIMutI CAGTG 2 cut(s) 562, 686
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 3 cut(s) 30, 334, 586
CaiI CAGNNNCTG 2 cut(s) 146, 757
Cfr10I RCCGGY 2 cut(s) 406, 723
Cfr13I GGNCC 2 cut(s) 404, 872
CseI GACGC 1 cut(s) 806
CsiI ACCWGGT 1 cut(s) 622
CspAI ACCGGT 1 cut(s) 723
CviAII CATG 8 cut(s) 102, 197, 275, 333, 454, 472, 517, 595
DdeI CTNAG 7 cut(s) 18, 139, 355, 465, 510, 554, 678
DpnI GATC 2 cut(s) 230, 905
DpnII GATC 2 cut(s) 228, 903
DraIII CACNNNGTG 1 cut(s) 681
DrdI GACNNNNNNGTC 1 cut(s) 704
DseDI GACNNNNNNGTC 1 cut(s) 704
EaeI YGGCCR 1 cut(s) 628
EciI GGCGGA 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 773
Eco72I CACGTG 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 8 cut(s) 105, 200, 278, 336, 457, 475, 520, 598
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 8 cut(s) 101, 196, 274, 332, 453, 471, 516, 594
Fnu4HI GCNGC 4 cut(s) 147, 330, 375, 561
FokI GGATG 4 cut(s) 228, 785, 827, 865
Fsp4HI GCNGC 4 cut(s) 147, 330, 375, 561
FspBI CTAG 1 cut(s) 29
GluI GCNGC 4 cut(s) 147, 330, 375, 561
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 4 cut(s) 584, 630, 874, 971
HapII CCGG 4 cut(s) 339, 407, 476, 724
HgaI GACGC 1 cut(s) 806
Hin1II CATG 8 cut(s) 105, 200, 278, 336, 457, 475, 520, 598
HinfI GANTC 7 cut(s) 116, 488, 528, 754, 839, 884, 952
HpaII CCGG 4 cut(s) 339, 407, 476, 724
HphI GGTGA 2 cut(s) 493, 707
Hpy166II GTNNAC 2 cut(s) 238, 713
Hpy188I TCNGA 7 cut(s) 86, 157, 256, 358, 575, 792, 889
Hpy188III TCNNGA 2 cut(s) 77, 235
Hpy8I GTNNAC 2 cut(s) 238, 713
Hpy99I CGWCG 2 cut(s) 800, 960
HpyAV CCTTC 1 cut(s) 272
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 2 cut(s) 379, 705
HpyCH4V TGCA 5 cut(s) 266, 332, 377, 520, 760
HpyF10VI GCNNNNNNNGC 5 cut(s) 314, 374, 383, 427, 757
HpyF3I CTNAG 7 cut(s) 18, 139, 355, 465, 510, 554, 678
HpySE526I ACGT 2 cut(s) 379, 705
Hsp92II CATG 8 cut(s) 105, 200, 278, 336, 457, 475, 520, 598
Kzo9I GATC 2 cut(s) 228, 903
LmnI GCTCC 2 cut(s) 192, 245
Lsp1109I GCAGC 4 cut(s) 133, 316, 361, 547
LweI GCATC 3 cut(s) 69, 373, 843
MabI ACCWGGT 1 cut(s) 622
MaeI CTAG 1 cut(s) 29
MaeII ACGT 2 cut(s) 379, 705
MaeIII GTNAC 4 cut(s) 43, 485, 695, 817
MalI GATC 2 cut(s) 230, 905
MboI GATC 2 cut(s) 228, 903
MboII GAAGA 4 cut(s) 46, 583, 931, 943
MfeI CAATTG 2 cut(s) 717, 976
MhlI GDGCHC 1 cut(s) 686
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 3 cut(s) 668, 717, 976
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 4 cut(s) 125, 482, 522, 893
MmeI TCCRAC 3 cut(s) 64, 180, 677
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 1 cut(s) 268
MscI TGGCCA 1 cut(s) 630
MseI TTAA 3 cut(s) 126, 671, 897
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 4 cut(s) 339, 407, 476, 724
MspR9I CCNGG 2 cut(s) 339, 624
MunI CAATTG 2 cut(s) 717, 976
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 5 cut(s) 314, 374, 383, 427, 757
NciI CCSGG 1 cut(s) 339
NdeII GATC 2 cut(s) 228, 903
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 8 cut(s) 105, 200, 278, 336, 457, 475, 520, 598
NlaIV GGNNCC 2 cut(s) 188, 420
NmeAIII GCCGAG 3 cut(s) 139, 343, 947
NmuCI GTSAC 2 cut(s) 485, 695
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 4 cut(s) 105, 336, 457, 475
NspV TTCGAA 1 cut(s) 449
PaeI GCATGC 1 cut(s) 336
PciI ACATGT 1 cut(s) 453
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 754, 839, 952
PflMI CCANNNNNTGG 2 cut(s) 692, 869
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 4 cut(s) 148, 331, 376, 562
Ple19I CGATCG 1 cut(s) 906
PleI GAGTC 4 cut(s) 124, 482, 522, 892
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
PpsI GAGTC 4 cut(s) 124, 482, 522, 892
Ppu21I YACGTR 1 cut(s) 380
PscI ACATGT 1 cut(s) 453
PshAI GACNNNNGTC 1 cut(s) 801
Psp6I CCWGG 1 cut(s) 622
PspCI CACGTG 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 2 cut(s) 188, 420
PspPI GGNCC 2 cut(s) 404, 872
PstNI CAGNNNCTG 2 cut(s) 146, 757
PvuI CGATCG 1 cut(s) 906
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 3 cut(s) 126, 671, 897
SatI GCNGC 4 cut(s) 147, 330, 375, 561
Sau3AI GATC 2 cut(s) 228, 903
Sau96I GGNCC 2 cut(s) 404, 872
SchI GAGTC 4 cut(s) 125, 482, 522, 893
ScrFI CCNGG 2 cut(s) 339, 624
SduI GDGCHC 1 cut(s) 686
SexAI ACCWGGT 1 cut(s) 622
SfaNI GCATC 3 cut(s) 69, 373, 843
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SphI GCATGC 1 cut(s) 336
Sse9I AATT 3 cut(s) 668, 717, 976
SsiI CCGC 1 cut(s) 430
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 2 cut(s) 337, 622
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 2 cut(s) 382, 708
TaqI TCGA 6 cut(s) 227, 449, 491, 744, 882, 955
TaqII GACCGA 1 cut(s) 809
TasI AATT 3 cut(s) 668, 717, 976
TfiI GAWTC 3 cut(s) 754, 839, 952
Tru1I TTAA 3 cut(s) 126, 671, 897
Tru9I TTAA 3 cut(s) 126, 671, 897
TscAI CASTG 2 cut(s) 562, 686
TseFI GTSAC 2 cut(s) 485, 695
TseI GCWGC 4 cut(s) 146, 329, 374, 560
Tsp45I GTSAC 2 cut(s) 485, 695
TspDTI ATGAA 3 cut(s) 291, 505, 583
TspGWI ACGGA 2 cut(s) 258, 698
TspRI CASTG 2 cut(s) 562, 686
Van91I CCANNNNNTGG 2 cut(s) 692, 869
VpaK11BI GGWCC 1 cut(s) 404
XceI RCATGY 4 cut(s) 105, 336, 457, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 832
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.