Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015297

Physical Location & Seq

Genomic Coordinates Forward (+)

28531555 .. 28533332

Gene Structure 1778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1222600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCATTGGTTTTGGCTTTGGCTTTTGTCTTTCTGGTTGGTTTATCTCAGGCTGACGGGCAGCTTATGGTGGGTTTCTACGGTGAAACATGCCCCGAAGCCGAGTCCATTGTTCGTACCGTTGTTAGAGATGCCGTTCTCTCCGATGCCAATACTGCAGCAATCTTGCTCCGACTCCATTTTCACGACTGCTTCGTCCAGGGGTGTGATGGTTCAATTCTTATTGAGGATGGTGCAAACGCGGAGAGACATGCATTTGGTCACCAAGGCGTTGGGGGATTCGAAGTGATAGAGAAAGCCAAGTCACAGTTGGAGGCTGCATGCCAAGGCGTCGTTTCTTGTGCAGACATTGTGGCCTTGGCAGCTAGAGATGCTATAGCCTTGGCTGGTGGCCCTGCATATGAAGTGGGTACAGGTCGAAGAGATGGTGTGGTATCAAATATGTCTCTGGCTGACGATATGCCGGATGTCAGTGATTCAATCCAACAACTCAAGGCTAAGTTTATGCGAAGGGGTCTCACAGAAAAAGACCTTGTCCTTCTCACTGCTGCTCATACAATTGGGACGACAGCATGCTTCTTTTTAACAAGAAGGCTGTACAACTTCTTCCCAGGAGGGGGATCTGATCCAAGCATCAATCCTAACCTCCTCCCTCAACTGAAACAAAGGTGCCCTCAAAACGGCAACGTCAACATCCGGCTGCCGATCGACGAAGGAAGCGAGCAAACATTCGACCTTCATATTTTGCAGAACATAAGAAATGGGTTCGCTGTGTTAGAATCTGATGCCAAGCTTAACGAGGACGCAATGACAAGGAGCATAATGGACTCCTACTTTCCTTTGTTCAATATTCCCTTTGGACCATCTTTTGAGGCTGATTTCATCGAATCAATTCTAAAAATGGGGCAGATTAGTGTCAAGACAGGATTCCAAGGTGTAATTAGGAGAAATTGTGGTAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

322

Amino Acids

34.68

Weight (kDa)

5.1

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	38 - 278	2.1e-72	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25980 AT4G25980
fragaria_vesca	FvH4_4g07570 FvH4_5g30550
malus_domestica	MD08G1222600.v1.1
prunus_persica	Prupe.1G560400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225371
rosa_laevigata	RLG00000001822
rosa_multiflora	Rmu_co8454263.1_g000001
rosa_rugosa	Rorug04G0023000 Rorug07G0229100
rosa_samantha	Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana	Rw7G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	669
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	620, 628
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	3 cut(s)	118, 412, 599
AfiI	CCNNNNNNNGG	3 cut(s)	616, 617, 680
AgsI	TTSAA	3 cut(s)	216, 480, 847
AjnI	CCWGG	2 cut(s)	198, 610
AluBI	AGCT	3 cut(s)	64, 365, 793
AluI	AGCT	3 cut(s)	64, 365, 793
Alw26I	GTCTC	3 cut(s)	241, 450, 521
AlwI	GGATC	2 cut(s)	620, 628
AoxI	GGCC	2 cut(s)	354, 391
ApeKI	GCWGC	6 cut(s)	61, 158, 317, 362, 548, 700
Asp700I	GAANNNNTTC	1 cut(s)	891
AspS9I	GGNCC	2 cut(s)	392, 860
AsuHPI	GGTGA	2 cut(s)	95, 254
AsuII	TTCGAA	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	674
BanI	GGYRCC	1 cut(s)	669
BarI	GAAGNNNNNNTAC	2 cut(s)	590, 622
BbvI	GCAGC	6 cut(s)	73, 170, 304, 374, 535, 687
BccI	CCATC	4 cut(s)	203, 224, 419, 871
BceAI	ACGGC	2 cut(s)	119, 697
BciT130I	CCWGG	2 cut(s)	200, 612
BcoDI	GTCTC	3 cut(s)	241, 450, 521
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	156, 375
BisI	GCNGC	6 cut(s)	62, 159, 318, 363, 549, 701
BlsI	GCNGC	6 cut(s)	63, 160, 319, 364, 550, 702
Bme1390I	CCNGG	2 cut(s)	200, 612
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	2 cut(s)	392, 860
BmiI	GGNNCC	1 cut(s)	671
BmrFI	CCNGG	2 cut(s)	200, 612
BmsI	GCATC	5 cut(s)	121, 136, 361, 642, 775
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	7 cut(s)	199, 265, 325, 357, 381, 610, 931
BsaXI	ACNNNNNCTCC	1 cut(s)	937
Bsc4I	CCNNNNNNNGG	3 cut(s)	616, 617, 680
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	2 cut(s)	200, 612
BseDI	CCNNGG	7 cut(s)	199, 265, 325, 357, 381, 610, 931
BseGI	GGATG	3 cut(s)	235, 472, 693
BseLI	CCNNNNNNNGG	3 cut(s)	616, 617, 680
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	638
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	6 cut(s)	73, 170, 304, 374, 535, 687
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	356, 393
BshNI	GGYRCC	1 cut(s)	669
BsiEI	CGRYCG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	464, 697
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	3 cut(s)	616, 617, 680
BsmAI	GTCTC	3 cut(s)	241, 450, 521
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	356, 393
Bso31I	GGTCTC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp1407I	TGTACA	1 cut(s)	597
Bsp143I	GATC	3 cut(s)	620, 625, 705
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	356, 393
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	2 cut(s)	620, 628
BspT104I	TTCGAA	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	597
BssECI	CCNNGG	7 cut(s)	199, 265, 325, 357, 381, 610, 931
BssMI	GATC	3 cut(s)	620, 625, 705
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	5 cut(s)	265, 325, 357, 381, 931
Bst2UI	CCWGG	2 cut(s)	200, 612
Bst4CI	ACNGT	3 cut(s)	83, 121, 309
Bst6I	CTCTTC	1 cut(s)	415
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	597
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	322, 574, 722
BstDEI	CTNAG	2 cut(s)	48, 498
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	235, 472, 693
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	3 cut(s)	623, 628, 708
BstMAI	GTCTC	3 cut(s)	241, 450, 521
BstMBI	GATC	3 cut(s)	620, 625, 705
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 362, 371
BstNI	CCWGG	2 cut(s)	200, 612
BstNSI	RCATGY	4 cut(s)	93, 254, 324, 576
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	198, 610
BstSFI	CTRYAG	2 cut(s)	156, 375
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	6 cut(s)	73, 170, 304, 374, 535, 687
BstX2I	RGATCY	1 cut(s)	620
BstXI	CCANNNNNNTGG	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	356, 393
BtsCI	GGATG	3 cut(s)	235, 472, 693
BtsI	GCAGTG	1 cut(s)	543
BtsIMutI	CAGTG	2 cut(s)	478, 543
Cac8I	GCNNGC	3 cut(s)	322, 574, 722
Cfr13I	GGNCC	2 cut(s)	392, 860
CseI	GACGC	2 cut(s)	319, 812
Csp6I	GTAC	3 cut(s)	117, 411, 598
CviAII	CATG	4 cut(s)	90, 251, 321, 573
CviQI	GTAC	3 cut(s)	117, 411, 598
DdeI	CTNAG	2 cut(s)	48, 498
DpnI	GATC	3 cut(s)	622, 627, 707
DpnII	GATC	3 cut(s)	620, 625, 705
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco130I	CCWWGG	5 cut(s)	265, 325, 357, 381, 931
Eco31I	GGTCTC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	860
Eco91I	GGTNACC	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	198, 610
EcoT14I	CCWWGG	5 cut(s)	265, 325, 357, 381, 931
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	5 cut(s)	265, 325, 357, 381, 931
FaeI	CATG	4 cut(s)	93, 254, 324, 576
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	4 cut(s)	89, 250, 320, 572
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	6 cut(s)	62, 159, 318, 363, 549, 701
FokI	GGATG	3 cut(s)	242, 479, 680
Fsp4HI	GCNGC	6 cut(s)	62, 159, 318, 363, 549, 701
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	6 cut(s)	62, 159, 318, 363, 549, 701
HaeIII	GGCC	2 cut(s)	356, 393
HapII	CCGG	2 cut(s)	464, 697
HgaI	GACGC	2 cut(s)	319, 812
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	4 cut(s)	93, 254, 324, 576
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	8 cut(s)	104, 174, 279, 476, 779, 827, 887, 927
HpaII	CCGG	2 cut(s)	464, 697
HphI	GGTGA	2 cut(s)	95, 254
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	4 cut(s)	145, 173, 625, 784
Hpy188III	TCNNGA	2 cut(s)	185, 919
Hpy8I	GTNNAC	1 cut(s)	691
Hpy99I	CGWCG	2 cut(s)	335, 713
HpyAV	CCTTC	5 cut(s)	504, 548, 585, 707, 746
HpyCH4III	ACNGT	3 cut(s)	83, 121, 309
HpyCH4IV	ACGT	1 cut(s)	687
HpyCH4V	TGCA	7 cut(s)	158, 236, 254, 320, 344, 398, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 362, 371
HpyF3I	CTNAG	2 cut(s)	48, 498
HpySE526I	ACGT	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	93, 254, 324, 576
Kzo9I	GATC	3 cut(s)	620, 625, 705
LmnI	GCTCC	2 cut(s)	174, 816
Lsp1109I	GCAGC	6 cut(s)	73, 170, 304, 374, 535, 687
LweI	GCATC	5 cut(s)	121, 136, 361, 642, 775
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	1 cut(s)	687
MaeIII	GTNAC	2 cut(s)	260, 303
MalI	GATC	3 cut(s)	622, 627, 707
MboI	GATC	3 cut(s)	620, 625, 705
MboII	GAAGA	2 cut(s)	432, 598
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	620
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	5 cut(s)	216, 558, 891, 939, 949
MlyI	GAGTC	3 cut(s)	113, 168, 821
MmeI	TCCRAC	3 cut(s)	196, 291, 508
MnlI	CCTC	9 cut(s)	220, 307, 608, 656, 659, 663, 684, 793, 865
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	2 cut(s)	584, 795
MspI	CCGG	2 cut(s)	464, 697
MspR9I	CCNGG	2 cut(s)	200, 612
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	200, 612
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	155, 362, 371
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	3 cut(s)	620, 625, 705
NlaIII	CATG	4 cut(s)	93, 254, 324, 576
NlaIV	GGNNCC	1 cut(s)	671
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	260, 303
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	4 cut(s)	93, 254, 324, 576
NspV	TTCGAA	1 cut(s)	282
PaeI	GCATGC	2 cut(s)	324, 576
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 717
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	5 cut(s)	279, 476, 779, 887, 927
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	6 cut(s)	63, 160, 319, 364, 550, 702
Ple19I	CGATCG	1 cut(s)	708
PleI	GAGTC	3 cut(s)	112, 168, 821
PpsI	GAGTC	3 cut(s)	112, 168, 821
Psp6I	CCWGG	2 cut(s)	198, 610
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	2 cut(s)	198, 610
PspN4I	GGNNCC	1 cut(s)	671
PspPI	GGNCC	2 cut(s)	392, 860
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	620
PsyI	GACNNNGTC	1 cut(s)	533
PvuI	CGATCG	1 cut(s)	708
RsaI	GTAC	3 cut(s)	118, 412, 599
RsaNI	GTAC	3 cut(s)	117, 411, 598
SaqAI	TTAA	2 cut(s)	584, 795
SatI	GCNGC	6 cut(s)	62, 159, 318, 363, 549, 701
Sau3AI	GATC	3 cut(s)	620, 625, 705
Sau96I	GGNCC	2 cut(s)	392, 860
SchI	GAGTC	3 cut(s)	113, 168, 821
ScrFI	CCNGG	2 cut(s)	200, 612
SduI	GDGCHC	1 cut(s)	674
SfaNI	GCATC	5 cut(s)	121, 136, 361, 642, 775
SfcI	CTRYAG	2 cut(s)	156, 375
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	2 cut(s)	324, 576
Sse9I	AATT	5 cut(s)	216, 558, 891, 939, 949
SsiI	CCGC	1 cut(s)	242
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	198, 610
StyI	CCWWGG	5 cut(s)	265, 325, 357, 381, 931
TaaI	ACNGT	3 cut(s)	83, 121, 309
TaiI	ACGT	1 cut(s)	690
TaqI	TCGA	5 cut(s)	282, 418, 708, 732, 885
TasI	AATT	5 cut(s)	216, 558, 891, 939, 949
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	5 cut(s)	279, 476, 779, 887, 927
Tru1I	TTAA	2 cut(s)	584, 795
Tru9I	TTAA	2 cut(s)	584, 795
TscAI	CASTG	2 cut(s)	478, 550
TseFI	GTSAC	2 cut(s)	260, 303
TseI	GCWGC	6 cut(s)	61, 158, 317, 362, 548, 700
Tsp45I	GTSAC	2 cut(s)	260, 303
TspDTI	ATGAA	3 cut(s)	417, 728, 871
TspRI	CASTG	2 cut(s)	478, 550
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	860
XceI	RCATGY	4 cut(s)	93, 254, 324, 576
XcmI	CCANNNNNNNNNTGG	2 cut(s)	206, 307
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.