Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454263.1

Orthogroup ID

OG0015297

Physical Location & Seq

Genomic Coordinates Reverse (-)

778 .. 1701

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgccggatgttagtgattcgattcagcaactcaaggccaagttcatgaggaagggactctcagaaaaggaccttgtcattctcagtgctgctcatacaattgggacaacagcttgcttcttcatgaccaaaaggctctacaacttttttccaggagggggatctgatccaacaatcaaccccattctactccaagaactcaaaagaaagtgtcctgaaaacggtgatgttaatgtacggttgccgattgaccgaggaagcgaggaaacatttgacattcacattatgcaaaatattagaagtggttttgctgtgttagaatccgatgccaagctcaatgatgatgaaactaccagtagtgtaatagactcctactttggttttttccagccaccttttggaccttcgttcgaggcagattttgtcgaatcaattataaagatgggccagattggtatcaagaccagtttggaaggtggggttaggcgaatttgctctagtttctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

5.2

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25980 AT4G25980
fragaria_vesca	FvH4_4g07570 FvH4_5g30550
malus_domestica	MD08G1222600.v1.1
prunus_persica	Prupe.1G560400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225371
rosa_laevigata	RLG00000001822
rosa_multiflora	Rmu_co8454263.1_g000001
rosa_rugosa	Rorug04G0023000 Rorug07G0229100
rosa_samantha	Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana	Rw7G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	398
AclWI	GGATC	2 cut(s)	161, 169
AcsI	RAATTY	1 cut(s)	489
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	158, 221, 398
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	113, 334
AluI	AGCT	2 cut(s)	113, 334
AlwI	GGATC	2 cut(s)	161, 169
AoxI	GGCC	2 cut(s)	36, 445
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	489
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AspS9I	GGNCC	3 cut(s)	70, 401, 445
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	2 cut(s)	70, 401
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	498
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	70, 401
BmgT120I	GGNCC	3 cut(s)	70, 401, 445
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 221, 398
Bse1I	ACTGG	2 cut(s)	354, 465
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	13
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	158, 221, 398
BseMII	CTCAG	2 cut(s)	75, 97
BseNI	ACTGG	2 cut(s)	354, 465
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	38, 447
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	69, 118
BslI	CCNNNNNNNGG	3 cut(s)	158, 221, 398
BsmFI	GGGAC	2 cut(s)	69, 118
BsnI	GGCC	2 cut(s)	38, 447
Bsp143I	GATC	2 cut(s)	161, 166
BspANI	GGCC	2 cut(s)	38, 447
BspCNI	CTCAG	2 cut(s)	74, 96
BspHI	TCATGA	2 cut(s)	45, 123
BspPI	GGATC	2 cut(s)	161, 169
BsrI	ACTGG	2 cut(s)	354, 465
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	161, 166
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	224, 240
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	61, 83
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	164, 169
BstMBI	GATC	2 cut(s)	161, 166
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	38, 447
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	2 cut(s)	45, 123
Cfr13I	GGNCC	3 cut(s)	70, 401, 445
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	2 cut(s)	46, 124
CviJI	RGCY	6 cut(s)	38, 113, 136, 334, 391, 447
CviKI_1	RGCY	6 cut(s)	38, 113, 136, 334, 391, 447
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	61, 83
DpnI	GATC	2 cut(s)	163, 168
DpnII	GATC	2 cut(s)	161, 166
Eco47I	GGWCC	2 cut(s)	70, 401
EcoO109I	RGGNCCY	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	49, 127
FaiI	YATR	6 cut(s)	47, 96, 125, 287, 437, 508
FaqI	GGGAC	2 cut(s)	69, 118
FatI	CATG	2 cut(s)	45, 123
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	38, 447
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	49, 127
HinfI	GANTC	6 cut(s)	17, 22, 57, 320, 368, 428
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	3 cut(s)	64, 166, 325
Hpy188III	TCNNGA	4 cut(s)	46, 124, 215, 460
HpyAV	CCTTC	3 cut(s)	46, 414, 467
HpyCH4III	ACNGT	2 cut(s)	224, 240
HpyCH4V	TGCA	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	61, 83
Hsp92II	CATG	2 cut(s)	49, 127
Kzo9I	GATC	2 cut(s)	161, 166
LpnPI	CCDG	8 cut(s)	18, 138, 165, 228, 367, 401, 461, 478
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	498
MalI	GATC	2 cut(s)	163, 168
MboI	GATC	2 cut(s)	161, 166
MboII	GAAGA	1 cut(s)	112
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	1 cut(s)	161
MluCI	AATT	3 cut(s)	99, 432, 489
MlyI	GAGTC	2 cut(s)	51, 362
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	42, 149, 248, 256, 406
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	153
NdeII	GATC	2 cut(s)	161, 166
NlaIII	CATG	2 cut(s)	49, 127
PagI	TCATGA	2 cut(s)	45, 123
PfeI	GAWTC	4 cut(s)	17, 22, 320, 428
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	51, 362
PpsI	GAGTC	2 cut(s)	51, 362
PpuMI	RGGWCCY	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspPI	GGNCC	3 cut(s)	70, 401, 445
PspPPI	RGGWCCY	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	161
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	161, 166
Sau96I	GGNCC	3 cut(s)	70, 401, 445
SchI	GAGTC	2 cut(s)	51, 362
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	6 cut(s)	75, 115, 336, 397, 406, 478
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	2 cut(s)	70, 401
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	3 cut(s)	99, 432, 489
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	224, 240
TaqI	TCGA	3 cut(s)	20, 411, 426
TaqII	GACCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	99, 432, 489
TfiI	GAWTC	4 cut(s)	17, 22, 320, 428
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	91
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	34, 112, 360
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	70, 401
XapI	RAATTY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.