Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0015297

Physical Location & Seq

Genomic Coordinates Reverse (-)

45423316 .. 45424867

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCTTTGGTTTCTGGTTTGATCTTGGTCTTTTTAGCTGGTAGCATTTGTTTGTCGGAGGGCCAGTTTAACAGGCTTACACTCGGTTTCTACGACGAAACATGCCCCAATGCCGAGTCCATTGTTCGATCCGTTGTTCGGGAAGCTGCTCTCTCGGATTCCACCATTCCGGCCGTCTTGCTCAGGCTTCATTTTCACGACTGCTTCGTTGAGGGCTGTGATGGTTCAATCCTTATAGACAACGGTGAAAGCGCAGAGAAAAATGCGTTTGGTCACCAAGGGGTTAAGGGATTTGAAGTGATAGACAAGGCAAAAGCACAGTTGGAGGCTACATGCCATGGCGTCGTTTCCTGTGCAGACATTGTGGCCTTGGCGGCTAGAGATGCCATATCCTTGGCGGGTGGGCCGAGTTACGAGGTGCCTACGGGGCGGATAGACGGAGTCGTTTCAAATCTTTCCCTGGCCGGTGATATGCCGGATGTTAGTGATTCGATTCAGCAACTCAAGGCCAAGTTCATGAGGAAGGGACTCTCAGAAAAGGACCTTGTCATTCTCAGTGCTGCTCATACAATTGGGACAACAGCTTGCTTCTTCATGACCAAAAGGCTCTACAACTTTTTTCCAGGAGGGGGATCTGATCCAACAATCAACCCCATTCTACTCCAAGAACTCAAAAGAAAGTGTCCTGAAAACGGTGATGTTAATGTACGGTTGCCGATTGACCGAGGAAGCGAGGAAACATTTGACATTCACATTATGCAAAATATTAGAAGTGGTTTTGCTGTGTTAGAATCCGATGCCAAGCTCAATGATGATGAAACTACCAGTAGTGTAATAGACTCCTACTTTGGTTTTTTCCAGCCACCTTTTGGACCTTCTTTCGAGGCAGATTTTGTCGAATCAATTATAAAGATGGGCCAGATTGGTATCAAGACCAGTTTGGAAGGTGGGGTTAGGCGAATTTGCTCTAGTTTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

326

Amino Acids

35.06

Weight (kDa)

4.87

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 282	1.2e-72	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25980 AT4G25980
fragaria_vesca	FvH4_4g07570 FvH4_5g30550
malus_domestica	MD08G1222600.v1.1
prunus_persica	Prupe.1G560400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225371
rosa_laevigata	RLG00000001822
rosa_multiflora	Rmu_co8454263.1_g000001
rosa_rugosa	Rorug04G0023000 Rorug07G0229100
rosa_samantha	Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana	Rw7G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	908
AccB1I	GGYRCC	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	869
AciI	CCGC	3 cut(s)	374, 398, 430
AclWI	GGATC	3 cut(s)	123, 632, 640
AcoI	YGGCCR	2 cut(s)	171, 462
AcsI	RAATTY	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	708
AfiI	CCNNNNNNNGG	4 cut(s)	138, 629, 692, 869
AgsI	TTSAA	3 cut(s)	228, 296, 450
AjnI	CCWGG	2 cut(s)	459, 622
AluBI	AGCT	4 cut(s)	38, 146, 584, 805
AluI	AGCT	4 cut(s)	38, 146, 584, 805
AlwI	GGATC	3 cut(s)	123, 632, 640
AoxI	GGCC	7 cut(s)	61, 171, 366, 404, 462, 507, 916
ApeKI	GCWGC	2 cut(s)	146, 560
ApoI	RAATTY	1 cut(s)	960
ArsI	GACNNNNNNTTYG	2 cut(s)	830, 862
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	5 cut(s)	61, 404, 541, 872, 916
AsuHPI	GGTGA	4 cut(s)	257, 266, 479, 707
AvaII	GGWCC	2 cut(s)	541, 872
BanI	GGYRCC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	133, 547
BccI	CCATC	2 cut(s)	215, 907
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	461, 624
BfaI	CTAG	2 cut(s)	378, 969
BglI	GCCNNNNNGGC	2 cut(s)	374, 427
BisI	GCNGC	3 cut(s)	147, 375, 561
BlsI	GCNGC	3 cut(s)	148, 376, 562
Bme1390I	CCNGG	2 cut(s)	461, 624
Bme18I	GGWCC	2 cut(s)	541, 872
BmgT120I	GGNCC	5 cut(s)	61, 404, 541, 872, 916
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	2 cut(s)	461, 624
BmsI	GCATC	2 cut(s)	373, 787
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	488
BsaBI	GATNNNNATC	1 cut(s)	926
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	6 cut(s)	277, 337, 369, 393, 459, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 629, 692, 869
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	64, 825, 936
Bse8I	GATNNNNATC	1 cut(s)	926
BseBI	CCWGG	2 cut(s)	461, 624
BseDI	CCNNGG	6 cut(s)	277, 337, 369, 393, 459, 724
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	926
BseLI	CCNNNNNNNGG	4 cut(s)	138, 629, 692, 869
BseMII	CTCAG	3 cut(s)	196, 546, 568
BseNI	ACTGG	3 cut(s)	64, 825, 936
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	133, 547
BsgI	GTGCAG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	7 cut(s)	63, 173, 368, 406, 464, 509, 918
BshNI	GGYRCC	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	3 cut(s)	170, 465, 476
BslFI	GGGAC	2 cut(s)	540, 589
BslI	CCNNNNNNNGG	4 cut(s)	138, 629, 692, 869
BsmFI	GGGAC	2 cut(s)	540, 589
BsnI	GGCC	7 cut(s)	63, 173, 368, 406, 464, 509, 918
Bsp143I	GATC	4 cut(s)	21, 128, 632, 637
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	374, 398, 430
BspANI	GGCC	7 cut(s)	63, 173, 368, 406, 464, 509, 918
BspCNI	CTCAG	3 cut(s)	195, 545, 567
BspHI	TCATGA	2 cut(s)	516, 594
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	3 cut(s)	123, 632, 640
BspT107I	GGYRCC	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	64, 825, 936
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	6 cut(s)	277, 337, 369, 393, 459, 724
BssMI	GATC	4 cut(s)	21, 128, 632, 637
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	4 cut(s)	277, 337, 369, 393
Bst2UI	CCWGG	2 cut(s)	461, 624
Bst4CI	ACNGT	4 cut(s)	245, 321, 695, 711
BstACI	GRCGYC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	3 cut(s)	182, 532, 554
BstDSI	CCRYGG	1 cut(s)	337
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	24, 131, 635, 640
BstMBI	GATC	4 cut(s)	21, 128, 632, 637
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 383, 427
BstNI	CCWGG	2 cut(s)	461, 624
BstNSI	RCATGY	2 cut(s)	105, 336
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	459, 622
BstV1I	GCAGC	2 cut(s)	133, 547
BstX2I	RGATCY	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	632
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	7 cut(s)	63, 173, 368, 406, 464, 509, 918
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	1 cut(s)	586
CciI	TCATGA	2 cut(s)	516, 594
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	5 cut(s)	61, 404, 541, 872, 916
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	707
CviAII	CATG	5 cut(s)	102, 333, 338, 517, 595
CviQI	GTAC	1 cut(s)	707
DdeI	CTNAG	3 cut(s)	182, 532, 554
DpnI	GATC	4 cut(s)	23, 130, 634, 639
DpnII	GATC	4 cut(s)	21, 128, 632, 637
EaeI	YGGCCR	2 cut(s)	171, 462
EagI	CGGCCG	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	445
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	4 cut(s)	277, 337, 369, 393
Eco47I	GGWCC	2 cut(s)	541, 872
Eco52I	CGGCCG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	459, 622
EcoT14I	CCWWGG	4 cut(s)	277, 337, 369, 393
ErhI	CCWWGG	4 cut(s)	277, 337, 369, 393
FaeI	CATG	5 cut(s)	105, 336, 341, 520, 598
FaqI	GGGAC	2 cut(s)	540, 589
FatI	CATG	5 cut(s)	101, 332, 337, 516, 594
FauI	CCCGC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	147, 375, 561
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	3 cut(s)	147, 375, 561
FspBI	CTAG	2 cut(s)	378, 969
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	3 cut(s)	147, 375, 561
HaeIII	GGCC	7 cut(s)	63, 173, 368, 406, 464, 509, 918
HapII	CCGG	3 cut(s)	170, 465, 476
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	5 cut(s)	105, 336, 341, 520, 598
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	9 cut(s)	116, 158, 441, 488, 493, 528, 791, 839, 899
HpaII	CCGG	3 cut(s)	170, 465, 476
HphI	GGTGA	4 cut(s)	257, 266, 479, 707
Hpy188I	TCNGA	5 cut(s)	58, 157, 535, 637, 796
Hpy188III	TCNNGA	6 cut(s)	140, 197, 517, 595, 686, 931
Hpy99I	CGWCG	2 cut(s)	98, 347
HpyAV	CCTTC	3 cut(s)	517, 885, 938
HpyCH4III	ACNGT	4 cut(s)	245, 321, 695, 711
HpyCH4V	TGCA	2 cut(s)	356, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 383, 427
HpyF3I	CTNAG	3 cut(s)	182, 532, 554
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	5 cut(s)	105, 336, 341, 520, 598
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	21, 128, 632, 637
Lsp1109I	GCAGC	2 cut(s)	133, 547
LweI	GCATC	2 cut(s)	373, 787
MaeI	CTAG	2 cut(s)	378, 969
MaeIII	GTNAC	2 cut(s)	272, 410
MalI	GATC	4 cut(s)	23, 130, 634, 639
MboI	GATC	4 cut(s)	21, 128, 632, 637
MboII	GAAGA	1 cut(s)	583
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	632
MluCI	AATT	3 cut(s)	570, 903, 960
MlyI	GAGTC	4 cut(s)	125, 450, 522, 833
MmeI	TCCRAC	3 cut(s)	36, 303, 665
MnlI	CCTC	9 cut(s)	52, 205, 319, 409, 513, 620, 719, 727, 877
MseI	TTAA	3 cut(s)	69, 285, 702
MspI	CCGG	3 cut(s)	170, 465, 476
MspR9I	CCNGG	2 cut(s)	461, 624
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	461, 624
MwoI	GCNNNNNNNGC	3 cut(s)	374, 383, 427
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	4 cut(s)	21, 128, 632, 637
NlaIII	CATG	5 cut(s)	105, 336, 341, 520, 598
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	2 cut(s)	139, 432
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	2 cut(s)	105, 336
PagI	TCATGA	2 cut(s)	516, 594
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 204
PfeI	GAWTC	5 cut(s)	158, 488, 493, 791, 899
PflFI	GACNNNGTC	2 cut(s)	440, 545
PflMI	CCANNNNNTGG	1 cut(s)	869
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	148, 376, 562
PleI	GAGTC	4 cut(s)	124, 449, 522, 833
PpsI	GAGTC	4 cut(s)	124, 449, 522, 833
PpuMI	RGGWCCY	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	908
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	459, 622
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	459, 622
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	5 cut(s)	61, 404, 541, 872, 916
PspPPI	RGGWCCY	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	632
PsyI	GACNNNGTC	2 cut(s)	440, 545
RsaI	GTAC	1 cut(s)	708
RsaNI	GTAC	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	69, 285, 702
SatI	GCNGC	3 cut(s)	147, 375, 561
Sau3AI	GATC	4 cut(s)	21, 128, 632, 637
Sau96I	GGNCC	5 cut(s)	61, 404, 541, 872, 916
SchI	GAGTC	4 cut(s)	125, 450, 522, 833
ScrFI	CCNGG	2 cut(s)	461, 624
SetI	ASST	9 cut(s)	40, 148, 420, 546, 586, 807, 868, 877, 949
SfaNI	GCATC	2 cut(s)	373, 787
SinI	GGWCC	2 cut(s)	541, 872
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	3 cut(s)	570, 903, 960
SsiI	CCGC	3 cut(s)	374, 398, 430
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	378, 969
StyD4I	CCNGG	2 cut(s)	459, 622
StyI	CCWWGG	4 cut(s)	277, 337, 369, 393
TaaI	ACNGT	4 cut(s)	245, 321, 695, 711
TaqI	TCGA	4 cut(s)	127, 491, 882, 897
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	3 cut(s)	570, 903, 960
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	5 cut(s)	158, 488, 493, 791, 899
Tru1I	TTAA	3 cut(s)	69, 285, 702
Tru9I	TTAA	3 cut(s)	69, 285, 702
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	146, 560
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	179, 505, 583, 831
TspGWI	ACGGA	2 cut(s)	121, 453
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	2 cut(s)	440, 545
Van91I	CCANNNNNTGG	1 cut(s)	869
VpaK11BI	GGWCC	2 cut(s)	541, 872
XapI	RAATTY	1 cut(s)	960
XceI	RCATGY	2 cut(s)	105, 336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	866
XspI	CTAG	2 cut(s)	378, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.