Rh7CG392500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015297
Physical Location & Seq
Forward (+)
49784781 .. 49786321
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG392500.1

Sequence Viewer

Length: 969 bp
ATGGCTTTGGTTTCTGGTTTGATCTTGGTCTTTTTAGCTGGTAGCATTTGTTTGTCGGAGGGCCAGTTTCTCGGTTTCTACGACGAAACATGCCCCAATGCCGAGTCCATTGTTCGATCCGTTGTTCGGGAAGCTGCTCTCTCGGATTCCACCATTCCGGCCGTCTTGCTCAGGCTTCATTTTCACGACTGCTTCGTTGAGGGCTGTGATGGTTCAATCCTTATAGACAACGGTGAAAGCGCAGAGAAAAATGCGTTTGGTCACCAAGGGGTTAGGGGATTTGAAGTGATAGACAAGGCAAAAGCACAGTTGGAGGCTACATGCCATGGCGTCGTTTCCTGTGCAGACATTGTGGCCTTGGCGGCTAGAGATGCCATATCCTTGGCGGGTGGGCCGAGTTACGAGGTGCCTACGGGGCGGATAGACGGAGTCGTTTCAAATCTGTCCCTGGCCGGTGATATGCCGGATGTTAGTGATTCGATTCAGCAACTCAAGGCCAAGTTCATGAGGAAGGGACTCTCAGAAAAGGACCTCGTCATTCTCAGTGCTGCTCATACAATTGGGACAACAGCTTGCTTCTTCATGACCAAAAGGCTCTACAACTTTTTTCCAGGAGGGGGATCTGATCCAACAATCAACCCCATTCTACTCCAAGAACTCAAAAGAAAGTGTCCTGAAAATGGTGATGTTAATGTACGGTTGCCGATTGACCGAGGAAGCGAGGAAACATTTGACATTCACATTTTGCAAAATATTAGAAGTGGTTTTGCTGTGTTAGAATCCGATGCCAAGCTCAATGACGATGAAACTACCAGTAGTGTAATAGACTCCTACTTTGGTTTTTTCCAGCCACCTTTTGGACCTTCGTTCGAGGCAGATTTTGTCGAATCAATTATAAAGATGGGCCAGATTGGTATCAAGACCAGTTTGGAAGGTGGGGTTAGGCGAATTTGCTCTAGTTTCTCATAG

Protein Analysis

322

Amino Acids

34.58

Weight (kDa)

4.81

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 38 - 278 2.8e-73 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25980 AT4G25980
fragaria_vesca FvH4_4g07570 FvH4_5g30550
malus_domestica MD08G1222600.v1.1
prunus_persica Prupe.1G560400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225371
rosa_laevigata RLG00000001822
rosa_multiflora Rmu_co8454263.1_g000001
rosa_rugosa Rorug04G0023000 Rorug07G0229100
rosa_samantha Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana Rw7G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
AccB1I GGYRCC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 857
AciI CCGC 3 cut(s) 362, 386, 418
AclWI GGATC 3 cut(s) 111, 620, 628
AcoI YGGCCR 2 cut(s) 159, 450
AcsI RAATTY 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 4 cut(s) 126, 617, 680, 857
AgsI TTSAA 3 cut(s) 216, 284, 438
AjnI CCWGG 2 cut(s) 447, 610
AluBI AGCT 4 cut(s) 38, 134, 572, 793
AluI AGCT 4 cut(s) 38, 134, 572, 793
AlwI GGATC 3 cut(s) 111, 620, 628
AoxI GGCC 7 cut(s) 61, 159, 354, 392, 450, 495, 904
ApeKI GCWGC 2 cut(s) 134, 548
ApoI RAATTY 1 cut(s) 948
ArsI GACNNNNNNTTYG 2 cut(s) 818, 850
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 5 cut(s) 61, 392, 529, 860, 904
AsuHPI GGTGA 4 cut(s) 245, 254, 467, 695
AvaII GGWCC 2 cut(s) 529, 860
BanI GGYRCC 1 cut(s) 406
BbvI GCAGC 2 cut(s) 121, 535
BccI CCATC 2 cut(s) 203, 895
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 2 cut(s) 449, 612
BfaI CTAG 2 cut(s) 366, 957
BglI GCCNNNNNGGC 2 cut(s) 362, 415
BisI GCNGC 3 cut(s) 135, 363, 549
BlsI GCNGC 3 cut(s) 136, 364, 550
Bme1390I CCNGG 2 cut(s) 449, 612
Bme18I GGWCC 2 cut(s) 529, 860
BmgT120I GGNCC 5 cut(s) 61, 392, 529, 860, 904
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 2 cut(s) 449, 612
BmsI GCATC 2 cut(s) 361, 775
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 914
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 6 cut(s) 265, 325, 357, 381, 447, 712
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 617, 680, 857
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 3 cut(s) 64, 813, 924
Bse8I GATNNNNATC 1 cut(s) 914
BseBI CCWGG 2 cut(s) 449, 612
BseDI CCNNGG 6 cut(s) 265, 325, 357, 381, 447, 712
BseGI GGATG 1 cut(s) 472
BseJI GATNNNNATC 1 cut(s) 914
BseLI CCNNNNNNNGG 4 cut(s) 126, 617, 680, 857
BseMII CTCAG 3 cut(s) 184, 534, 556
BseNI ACTGG 3 cut(s) 64, 813, 924
BseX3I CGGCCG 1 cut(s) 159
BseXI GCAGC 2 cut(s) 121, 535
BsgI GTGCAG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 7 cut(s) 63, 161, 356, 394, 452, 497, 906
BshNI GGYRCC 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 3 cut(s) 158, 453, 464
BslFI GGGAC 3 cut(s) 430, 528, 577
BslI CCNNNNNNNGG 4 cut(s) 126, 617, 680, 857
BsmFI GGGAC 3 cut(s) 430, 528, 577
BsnI GGCC 7 cut(s) 63, 161, 356, 394, 452, 497, 906
Bsp143I GATC 4 cut(s) 21, 116, 620, 625
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 3 cut(s) 362, 386, 418
BspANI GGCC 7 cut(s) 63, 161, 356, 394, 452, 497, 906
BspCNI CTCAG 3 cut(s) 183, 533, 555
BspHI TCATGA 2 cut(s) 504, 582
BspLI GGNNCC 1 cut(s) 408
BspPI GGATC 3 cut(s) 111, 620, 628
BspT107I GGYRCC 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 3 cut(s) 64, 813, 924
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 6 cut(s) 265, 325, 357, 381, 447, 712
BssMI GATC 4 cut(s) 21, 116, 620, 625
BssNI GRCGYC 1 cut(s) 330
BssT1I CCWWGG 4 cut(s) 265, 325, 357, 381
Bst2UI CCWGG 2 cut(s) 449, 612
Bst4CI ACNGT 3 cut(s) 233, 309, 699
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 1 cut(s) 574
BstDEI CTNAG 3 cut(s) 170, 520, 542
BstDSI CCRYGG 1 cut(s) 325
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 4 cut(s) 24, 119, 623, 628
BstMBI GATC 4 cut(s) 21, 116, 620, 625
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 362, 371, 415
BstNI CCWGG 2 cut(s) 449, 612
BstNSI RCATGY 2 cut(s) 93, 324
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 447, 610
BstV1I GCAGC 2 cut(s) 121, 535
BstX2I RGATCY 1 cut(s) 620
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 620
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 7 cut(s) 63, 161, 356, 394, 452, 497, 906
BtgI CCRYGG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 1 cut(s) 574
CciI TCATGA 2 cut(s) 504, 582
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 452
Cfr13I GGNCC 5 cut(s) 61, 392, 529, 860, 904
CseI GACGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 695
CviAII CATG 5 cut(s) 90, 321, 326, 505, 583
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 3 cut(s) 170, 520, 542
DpnI GATC 4 cut(s) 23, 118, 622, 627
DpnII GATC 4 cut(s) 21, 116, 620, 625
EaeI YGGCCR 2 cut(s) 159, 450
EagI CGGCCG 1 cut(s) 159
EciI GGCGGA 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 159
Eco130I CCWWGG 4 cut(s) 265, 325, 357, 381
Eco47I GGWCC 2 cut(s) 529, 860
Eco52I CGGCCG 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 529
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 447, 610
EcoT14I CCWWGG 4 cut(s) 265, 325, 357, 381
ErhI CCWWGG 4 cut(s) 265, 325, 357, 381
FaeI CATG 5 cut(s) 93, 324, 329, 508, 586
FaqI GGGAC 3 cut(s) 430, 528, 577
FatI CATG 5 cut(s) 89, 320, 325, 504, 582
FauI CCCGC 1 cut(s) 379
Fnu4HI GCNGC 3 cut(s) 135, 363, 549
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 3 cut(s) 135, 363, 549
FspBI CTAG 2 cut(s) 366, 957
GlaI GCGC 1 cut(s) 241
GluI GCNGC 3 cut(s) 135, 363, 549
HaeIII GGCC 7 cut(s) 63, 161, 356, 394, 452, 497, 906
HapII CCGG 3 cut(s) 158, 453, 464
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 5 cut(s) 93, 324, 329, 508, 586
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 9 cut(s) 104, 146, 429, 476, 481, 516, 779, 827, 887
HpaII CCGG 3 cut(s) 158, 453, 464
HphI GGTGA 4 cut(s) 245, 254, 467, 695
Hpy188I TCNGA 5 cut(s) 58, 145, 523, 625, 784
Hpy188III TCNNGA 6 cut(s) 128, 185, 505, 583, 674, 919
Hpy99I CGWCG 2 cut(s) 86, 335
HpyAV CCTTC 3 cut(s) 505, 873, 926
HpyCH4III ACNGT 3 cut(s) 233, 309, 699
HpyCH4V TGCA 2 cut(s) 344, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 371, 415
HpyF3I CTNAG 3 cut(s) 170, 520, 542
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 5 cut(s) 93, 324, 329, 508, 586
HspAI GCGC 1 cut(s) 240
Kzo9I GATC 4 cut(s) 21, 116, 620, 625
Lsp1109I GCAGC 2 cut(s) 121, 535
LweI GCATC 2 cut(s) 361, 775
MaeI CTAG 2 cut(s) 366, 957
MaeIII GTNAC 2 cut(s) 260, 398
MalI GATC 4 cut(s) 23, 118, 622, 627
MboI GATC 4 cut(s) 21, 116, 620, 625
MboII GAAGA 1 cut(s) 571
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 1 cut(s) 620
MluCI AATT 3 cut(s) 558, 891, 948
MlyI GAGTC 4 cut(s) 113, 438, 510, 821
MmeI TCCRAC 3 cut(s) 36, 291, 653
MseI TTAA 1 cut(s) 690
MspI CCGG 3 cut(s) 158, 453, 464
MspR9I CCNGG 2 cut(s) 449, 612
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 2 cut(s) 449, 612
MwoI GCNNNNNNNGC 3 cut(s) 362, 371, 415
NcoI CCATGG 1 cut(s) 325
NdeII GATC 4 cut(s) 21, 116, 620, 625
NlaIII CATG 5 cut(s) 93, 324, 329, 508, 586
NlaIV GGNNCC 1 cut(s) 408
NmeAIII GCCGAG 2 cut(s) 127, 420
NmuCI GTSAC 1 cut(s) 260
NspI RCATGY 2 cut(s) 93, 324
PagI TCATGA 2 cut(s) 504, 582
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 192
PfeI GAWTC 5 cut(s) 146, 476, 481, 779, 887
PflFI GACNNNGTC 2 cut(s) 428, 533
PflMI CCANNNNNTGG 1 cut(s) 857
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 3 cut(s) 136, 364, 550
PleI GAGTC 4 cut(s) 112, 437, 510, 821
PpsI GAGTC 4 cut(s) 112, 437, 510, 821
PpuMI RGGWCCY 1 cut(s) 529
PsiI TTATAA 1 cut(s) 896
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 447, 610
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 2 cut(s) 447, 610
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 5 cut(s) 61, 392, 529, 860, 904
PspPPI RGGWCCY 1 cut(s) 529
PsuI RGATCY 1 cut(s) 620
PsyI GACNNNGTC 2 cut(s) 428, 533
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 3 cut(s) 135, 363, 549
Sau3AI GATC 4 cut(s) 21, 116, 620, 625
Sau96I GGNCC 5 cut(s) 61, 392, 529, 860, 904
SchI GAGTC 4 cut(s) 113, 438, 510, 821
ScrFI CCNGG 2 cut(s) 449, 612
SetI ASST 9 cut(s) 40, 136, 408, 534, 574, 795, 856, 865, 937
SfaNI GCATC 2 cut(s) 361, 775
SinI GGWCC 2 cut(s) 529, 860
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 3 cut(s) 558, 891, 948
SsiI CCGC 3 cut(s) 362, 386, 418
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 366, 957
StyD4I CCNGG 2 cut(s) 447, 610
StyI CCWWGG 4 cut(s) 265, 325, 357, 381
TaaI ACNGT 3 cut(s) 233, 309, 699
TaqI TCGA 4 cut(s) 115, 479, 870, 885
TaqII GACCGA 1 cut(s) 726
TasI AATT 3 cut(s) 558, 891, 948
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 5 cut(s) 146, 476, 481, 779, 887
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TscAI CASTG 1 cut(s) 550
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 134, 548
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 167, 493, 571, 819
TspGWI ACGGA 2 cut(s) 109, 441
TspRI CASTG 1 cut(s) 550
Tth111I GACNNNGTC 2 cut(s) 428, 533
Van91I CCANNNNNTGG 1 cut(s) 857
VpaK11BI GGWCC 2 cut(s) 529, 860
XapI RAATTY 1 cut(s) 948
XceI RCATGY 2 cut(s) 93, 324
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XspI CTAG 2 cut(s) 366, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.