Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015297

Physical Location & Seq

Genomic Coordinates Reverse (-)

6975676 .. 6976939

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTTACCCCCAAAATCGTCCTTCTTGTTCTGCTGCTATTCTTTTTCGGTGTGGCTGGATGTGGAGCCGCAGTGCAGGTTGGGTTTTATAACCTTTCCTGCCCTGCCGCGGAGTCCATCATCTCCGCCGCGGTGAGAGAGGCGGCAAGGGCCGACCCTCAGACCCCTCCGATCCTCCTCCGGCTCCAATTTCATGACTGCTTTGTGGACGGCTGCGATGGATCCATACTCCTCGACTCTGGCGAGAACCCCGAGAAGTTAGCCCCTGCGCACGCCGGAGTTCGAGGCTTCGACGTCATCGACCAAGCCAAGGCCAAGCTTGAGGAGGCGAAGGGTCCCTTTTACGAGGTCCCGACCGGCCGAAAGGACGGTCGGGTCTCCAATGCCGATCACGCCTCCAGAATGCCGGACGTAGACGACCCCATAAAGGCGCTGAAGCAGAAGTTTGCGGAGAAAGGGCTGAGGGAGAAGGACCTAGTTCTTCTCACCGCCGGAGCACATACAATTGGAACTACAGCCTGTTTCTTCATGAAAAACAGGCTGTATAATTTCAAAGAGACCAGCAAGCCGGACCCGGCAATCAGTCCGGTGTTTCTACCGCAGCTTGAGAGCAACTGCCCCCTAGGAGGAGACGTCAATAAGAGAACCTCACTTGATCCGGCAACCAATAACATCTTTGACAGAAAGCACTTCGACAACATCAGGCGTGGCTTCGCGGTGCTGGCGTCGGACGCACAACTGATGGAGGACCCGGCCACTGAAGCGGTGGTGGAGGCTTACCTCAACCTGGAGGCCTCGTTTGAGTCGGAATTCGTTGCATCCATTGTCAAGATGGGGGCCATTGGGATCAAGACGTCCGGAGGCGATGGGGAGATAAGGAGGGAATGCAGCAAGACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

301

Amino Acids

32.42

Weight (kDa)

5.5

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	42 - 261	6.6e-55	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25980 AT4G25980
fragaria_vesca	FvH4_4g07570 FvH4_5g30550
malus_domestica	MD08G1222600.v1.1
prunus_persica	Prupe.1G560400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225371
rosa_laevigata	RLG00000001822
rosa_multiflora	Rmu_co8454263.1_g000001
rosa_rugosa	Rorug04G0023000 Rorug07G0229100
rosa_samantha	Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana	Rw7G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AasI	GACNNNNNNGTC	1 cut(s)	374
AatII	GACGTC	3 cut(s)	297, 636, 857
Acc16I	TGCGCA	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	67
AccI	GTMKAC	1 cut(s)	414
AccII	CGCG	3 cut(s)	110, 131, 716
AccIII	TCCGGA	1 cut(s)	857
AclWI	GGATC	5 cut(s)	166, 216, 229, 650, 854
AcoI	YGGCCR	2 cut(s)	358, 753
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	2 cut(s)	455, 780
AcyI	GRCGYC	4 cut(s)	294, 633, 725, 854
AfiI	CCNNNNNNNGG	5 cut(s)	109, 310, 427, 626, 787
AgsI	TTSAA	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	786
AluBI	AGCT	2 cut(s)	319, 604
AluI	AGCT	2 cut(s)	319, 604
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	3 cut(s)	382, 551, 624
AlwI	GGATC	5 cut(s)	166, 216, 229, 650, 854
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	857
AoxI	GGCC	6 cut(s)	150, 312, 358, 753, 792, 837
ApeKI	GCWGC	4 cut(s)	34, 213, 601, 888
ApoI	RAATTY	1 cut(s)	809
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspA2I	CCTAGG	1 cut(s)	622
AspLEI	GCGC	2 cut(s)	271, 433
AspS9I	GGNCC	7 cut(s)	150, 335, 349, 472, 571, 748, 837
AsuC2I	CCSGG	2 cut(s)	575, 752
AsuHPI	GGTGA	2 cut(s)	145, 478
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	5 cut(s)	335, 349, 472, 571, 748
AvrII	CCTAGG	1 cut(s)	622
BamHI	GGATCC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	499
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	21, 200, 613
BccI	CCATC	5 cut(s)	125, 212, 736, 826, 860
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	788
BcnI	CCSGG	2 cut(s)	575, 752
BcoDI	GTCTC	3 cut(s)	382, 551, 624
BfaI	CTAG	2 cut(s)	476, 623
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	8 cut(s)	35, 69, 108, 129, 144, 214, 602, 889
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	8 cut(s)	36, 70, 109, 130, 145, 215, 603, 890
Bme1390I	CCNGG	3 cut(s)	575, 752, 788
Bme18I	GGWCC	5 cut(s)	335, 349, 472, 571, 748
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	7 cut(s)	150, 335, 349, 472, 571, 748, 837
BmiI	GGNNCC	9 cut(s)	67, 185, 223, 336, 337, 351, 573, 750, 838
BmrFI	CCNGG	3 cut(s)	575, 752, 788
BmsI	GCATC	1 cut(s)	827
BpmI	CTGGAG	2 cut(s)	382, 809
Bpu10I	CCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	341, 626
BpuMI	CCSGG	2 cut(s)	575, 752
BsaHI	GRCGYC	4 cut(s)	294, 633, 725, 854
BsaI	GGTCTC	2 cut(s)	382, 551
BsaJI	CCNNGG	4 cut(s)	108, 129, 309, 622
BsaWI	WCCGGW	2 cut(s)	586, 857
BsaXI	ACNNNNNCTCC	6 cut(s)	57, 87, 618, 648, 782, 812
Bsc4I	CCNNNNNNNGG	5 cut(s)	109, 310, 427, 626, 787
Bse118I	RCCGGY	1 cut(s)	356
BseAI	TCCGGA	1 cut(s)	857
BseBI	CCWGG	1 cut(s)	788
BseDI	CCNNGG	4 cut(s)	108, 129, 309, 622
BseGI	GGATG	2 cut(s)	65, 818
BseLI	CCNNNNNNNGG	5 cut(s)	109, 310, 427, 626, 787
BseMII	CTCAG	2 cut(s)	173, 452
BseRI	GAGGAG	4 cut(s)	167, 221, 338, 642
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	21, 200, 613
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	3 cut(s)	110, 131, 716
Bsh1285I	CGRYCG	3 cut(s)	357, 361, 373
BshFI	GGCC	6 cut(s)	152, 314, 360, 755, 794, 839
BsiEI	CGRYCG	3 cut(s)	357, 361, 373
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	2 cut(s)	321, 335
BslI	CCNNNNNNNGG	5 cut(s)	109, 310, 427, 626, 787
BsmAI	GTCTC	3 cut(s)	382, 551, 624
BsmBI	CGTCTC	1 cut(s)	624
BsmFI	GGGAC	2 cut(s)	321, 335
BsmI	GAATGC	2 cut(s)	408, 890
BsnI	GGCC	6 cut(s)	152, 314, 360, 755, 794, 839
Bso31I	GGTCTC	2 cut(s)	382, 551
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp13I	TCCGGA	1 cut(s)	857
Bsp143I	GATC	5 cut(s)	171, 221, 388, 655, 846
BspANI	GGCC	6 cut(s)	152, 314, 360, 755, 794, 839
BspCNI	CTCAG	2 cut(s)	172, 453
BspEI	TCCGGA	1 cut(s)	857
BspFNI	CGCG	3 cut(s)	110, 131, 716
BspHI	TCATGA	2 cut(s)	193, 528
BspLI	GGNNCC	9 cut(s)	67, 185, 223, 336, 337, 351, 573, 750, 838
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	5 cut(s)	166, 216, 229, 650, 854
BspTNI	GGTCTC	2 cut(s)	382, 551
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	4 cut(s)	108, 129, 309, 622
BssMI	GATC	5 cut(s)	171, 221, 388, 655, 846
BssNI	GRCGYC	4 cut(s)	294, 633, 725, 854
BssT1I	CCWWGG	2 cut(s)	309, 622
Bst2UI	CCWGG	1 cut(s)	788
Bst4CI	ACNGT	1 cut(s)	371
BstACI	GRCGYC	4 cut(s)	294, 633, 725, 854
BstC8I	GCNNGC	3 cut(s)	273, 566, 723
BstDEI	CTNAG	2 cut(s)	159, 461
BstDSI	CCRYGG	2 cut(s)	108, 129
BstF5I	GGATG	2 cut(s)	65, 818
BstFNI	CGCG	3 cut(s)	110, 131, 716
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	2 cut(s)	271, 433
BstKTI	GATC	5 cut(s)	174, 224, 391, 658, 849
BstMAI	GTCTC	3 cut(s)	382, 551, 624
BstMBI	GATC	5 cut(s)	171, 221, 388, 655, 846
BstMCI	CGRYCG	3 cut(s)	357, 361, 373
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 392, 722, 731, 761
BstNI	CCWGG	1 cut(s)	788
BstSCI	CCNGG	3 cut(s)	573, 750, 786
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	3 cut(s)	110, 131, 716
BstV1I	GCAGC	3 cut(s)	21, 200, 613
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BstZI	CGGCCG	1 cut(s)	358
BsuRI	GGCC	6 cut(s)	152, 314, 360, 755, 794, 839
BtgI	CCRYGG	2 cut(s)	108, 129
BtgZI	GCGATG	2 cut(s)	231, 879
BtsCI	GGATG	2 cut(s)	65, 818
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	78, 756
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	273, 566, 723
CciI	TCATGA	2 cut(s)	193, 528
CfoI	GCGC	2 cut(s)	271, 433
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	7 cut(s)	150, 335, 349, 472, 571, 748, 837
Cfr42I	CCGCGG	2 cut(s)	111, 132
CseI	GACGC	2 cut(s)	714, 740
CviAII	CATG	2 cut(s)	194, 529
DdeI	CTNAG	2 cut(s)	159, 461
DpnI	GATC	5 cut(s)	173, 223, 390, 657, 848
DpnII	GATC	5 cut(s)	171, 221, 388, 655, 846
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	358, 753
EagI	CGGCCG	1 cut(s)	358
EciI	GGCGGA	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	309, 622
Eco147I	AGGCCT	1 cut(s)	794
Eco31I	GGTCTC	2 cut(s)	382, 551
Eco47I	GGWCC	5 cut(s)	335, 349, 472, 571, 748
Eco52I	CGGCCG	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	455, 780
Eco88I	CYCGRG	1 cut(s)	251
EcoO109I	RGGNCCY	4 cut(s)	335, 349, 472, 748
EcoRI	GAATTC	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	786
EcoT14I	CCWWGG	2 cut(s)	309, 622
ErhI	CCWWGG	2 cut(s)	309, 622
Esp3I	CGTCTC	1 cut(s)	624
FaeI	CATG	2 cut(s)	197, 532
FaiI	YATR	7 cut(s)	90, 195, 227, 425, 501, 530, 546
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	2 cut(s)	321, 335
FatI	CATG	2 cut(s)	193, 528
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	8 cut(s)	35, 69, 108, 129, 144, 214, 602, 889
FokI	GGATG	2 cut(s)	72, 805
Fsp4HI	GCNGC	8 cut(s)	35, 69, 108, 129, 144, 214, 602, 889
FspBI	CTAG	2 cut(s)	476, 623
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	2 cut(s)	270, 432
GluI	GCNGC	8 cut(s)	35, 69, 108, 129, 144, 214, 602, 889
GsuI	CTGGAG	2 cut(s)	382, 809
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	6 cut(s)	152, 314, 360, 755, 794, 839
HgaI	GACGC	2 cut(s)	714, 740
HhaI	GCGC	2 cut(s)	271, 433
Hin1I	GRCGYC	4 cut(s)	294, 633, 725, 854
Hin1II	CATG	2 cut(s)	197, 532
Hin6I	GCGC	2 cut(s)	269, 431
HinP1I	GCGC	2 cut(s)	269, 431
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	3 cut(s)	113, 236, 803
HphI	GGTGA	2 cut(s)	145, 478
Hpy166II	GTNNAC	2 cut(s)	208, 415
Hpy188I	TCNGA	4 cut(s)	162, 171, 730, 808
Hpy188III	TCNNGA	7 cut(s)	194, 352, 399, 529, 829, 850, 858
Hpy8I	GTNNAC	2 cut(s)	208, 415
Hpy99I	CGWCG	2 cut(s)	296, 730
HpyAV	CCTTC	3 cut(s)	32, 325, 463
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	4 cut(s)	294, 411, 633, 854
HpyCH4V	TGCA	3 cut(s)	76, 818, 888
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 392, 722, 731, 761
HpyF3I	CTNAG	2 cut(s)	159, 461
HpySE526I	ACGT	4 cut(s)	294, 411, 633, 854
Hsp92I	GRCGYC	4 cut(s)	294, 633, 725, 854
Hsp92II	CATG	2 cut(s)	197, 532
HspAI	GCGC	2 cut(s)	269, 431
KflI	GGGWCCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	857
KspI	CCGCGG	2 cut(s)	111, 132
Kzo9I	GATC	5 cut(s)	171, 221, 388, 655, 846
LmnI	GCTCC	3 cut(s)	65, 189, 494
Lsp1109I	GCAGC	3 cut(s)	21, 200, 613
LweI	GCATC	1 cut(s)	827
MaeI	CTAG	2 cut(s)	476, 623
MaeII	ACGT	4 cut(s)	294, 411, 633, 854
MalI	GATC	5 cut(s)	173, 223, 390, 657, 848
MboI	GATC	5 cut(s)	171, 221, 388, 655, 846
MboII	GAAGA	2 cut(s)	473, 517
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	4 cut(s)	188, 504, 547, 809
MlyI	GAGTC	3 cut(s)	122, 230, 812
MmeI	TCCRAC	2 cut(s)	708, 786
MroI	TCCGGA	1 cut(s)	857
MspA1I	CMGCKG	2 cut(s)	110, 131
MspR9I	CCNGG	3 cut(s)	575, 752, 788
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	2 cut(s)	408, 890
MvaI	CCWGG	1 cut(s)	788
MvnI	CGCG	3 cut(s)	110, 131, 716
MwoI	GCNNNNNNNGC	5 cut(s)	149, 392, 722, 731, 761
NciI	CCSGG	2 cut(s)	575, 752
NdeII	GATC	5 cut(s)	171, 221, 388, 655, 846
NlaIII	CATG	2 cut(s)	197, 532
NlaIV	GGNNCC	9 cut(s)	67, 185, 223, 336, 337, 351, 573, 750, 838
NsbI	TGCGCA	1 cut(s)	270
PagI	TCATGA	2 cut(s)	193, 528
PceI	AGGCCT	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 297
PctI	GAATGC	2 cut(s)	408, 890
PkrI	GCNGC	8 cut(s)	36, 70, 109, 130, 145, 215, 603, 890
PleI	GAGTC	3 cut(s)	121, 230, 811
PpsI	GAGTC	3 cut(s)	121, 230, 811
PpuMI	RGGWCCY	4 cut(s)	335, 349, 472, 748
PsiI	TTATAA	1 cut(s)	90
Psp5II	RGGWCCY	4 cut(s)	335, 349, 472, 748
Psp6I	CCWGG	1 cut(s)	786
PspGI	CCWGG	1 cut(s)	786
PspN4I	GGNNCC	9 cut(s)	67, 185, 223, 336, 337, 351, 573, 750, 838
PspPI	GGNCC	7 cut(s)	150, 335, 349, 472, 571, 748, 837
PspPPI	RGGWCCY	4 cut(s)	335, 349, 472, 748
PsuI	RGATCY	1 cut(s)	221
SacII	CCGCGG	2 cut(s)	111, 132
SatI	GCNGC	8 cut(s)	35, 69, 108, 129, 144, 214, 602, 889
Sau3AI	GATC	5 cut(s)	171, 221, 388, 655, 846
Sau96I	GGNCC	7 cut(s)	150, 335, 349, 472, 571, 748, 837
SchI	GAGTC	3 cut(s)	122, 230, 812
ScrFI	CCNGG	3 cut(s)	575, 752, 788
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	827
SfcI	CTRYAG	1 cut(s)	513
Sfr303I	CCGCGG	2 cut(s)	111, 132
SgrBI	CCGCGG	2 cut(s)	111, 132
SinI	GGWCC	5 cut(s)	335, 349, 472, 571, 748
SmlI	CTYRAG	2 cut(s)	320, 605
SmoI	CTYRAG	2 cut(s)	320, 605
Sse9I	AATT	4 cut(s)	188, 504, 547, 809
SseBI	AGGCCT	1 cut(s)	794
SspMI	CTAG	2 cut(s)	476, 623
StuI	AGGCCT	1 cut(s)	794
StyD4I	CCNGG	3 cut(s)	573, 750, 786
StyI	CCWWGG	2 cut(s)	309, 622
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	4 cut(s)	297, 414, 636, 857
TaqI	TCGA	5 cut(s)	234, 283, 291, 300, 693
TasI	AATT	4 cut(s)	188, 504, 547, 809
TauI	GCSGC	4 cut(s)	71, 110, 131, 146
TscAI	CASTG	2 cut(s)	78, 763
TseI	GCWGC	4 cut(s)	34, 213, 601, 888
TspDTI	ATGAA	3 cut(s)	182, 517, 545
TspRI	CASTG	2 cut(s)	78, 763
VpaK11BI	GGWCC	5 cut(s)	335, 349, 472, 571, 748
XapI	RAATTY	1 cut(s)	809
XcmI	CCANNNNNNNNNTGG	2 cut(s)	763, 829
XmaJI	CCTAGG	1 cut(s)	622
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	2 cut(s)	476, 623
ZraI	GACGTC	3 cut(s)	295, 634, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.