Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015297

Physical Location & Seq

Genomic Coordinates Reverse (-)

21407502 .. 21409522

Gene Structure 2021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCTTTGGTTTCTAGTTTGGTTTTGGTCTTTTTAGTTGTTGGTAGCATTTGTTTGTCGGAGGGCCAGTTTAACCGGCTTACAGTCGGTTTCTACGACCAAACATGCCCCAATGCCGAGGCCATTGTTCGTGCCGTTGTCCGGGAAGCTGCTCTCTCGGATTCCAATATGCCGGCCGTCTTGCTCAGGCTCCATTTTCACGACTGCTTCGTTGAGGGCTGTGATGGTTCAATCCTGATAGACAATGGTAAAAACGCAGAGAAAAATGCGTTTGGTCACGAAGGGGTTAGAGGGTTTGAAGTGATAGACAAGGCAAAAGCACAGTTGGAGGCTACATGCCATGGTGTCGTTTCCTGTGCAGACATTGTGGCCTTGGCTGCTAGAGATGCCATATCCTTGGCGGGTGGGCCGAGTTATGAGGTGCCTACAGGGCGGATAGACGGTGTCGTTTCAAATCTGTCCCTGGCCGGTGATATGCCAGATGTTAGTGATTCGATTCAGCAACTCAAGGCTAAGTTCAGGAGGAAGGGACTCTCGGAGAAGGACCTTGTCACTCTCAGTGCTGCTCATACAATTGGGACAACAGCTTGCTTCTTCATGACCAAAAGGCTCTACAACTTTTTTCCAGGAGGGGGATCTGATCCAACAATCAACCCCATTCTACTCCAAGAGCTCAAAGCGAAGTGTCCTCAAAATGGTGATGTTAATGTACGGGTGCCGATTGACCGAGGAAGCGAGGAAGCATTTGACATTCACATTTTGCAAAATATTAGAAATGGTTTTGGTGTGTTAGAATCCGATGCCAAGCTCAATGGAGATGAAACAACCAGTAGTATAATAGACTCTTACTTTGGGTTTTTCCCTCCACCTTTCGGACCTTCGTTCGAGGCCGATTTTGTCGAATCGATTATAAAGATGGGCCAGATTGGTATCAAGACAAGTTTGCAAGGTGGGGTTAGACGAATTTGTTCTAGTTTCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0045229 GO:0050896 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

328

Amino Acids

35.06

Weight (kDa)

5.21

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	43 - 283	1.1e-74	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25980 AT4G25980
fragaria_vesca	FvH4_4g07570 FvH4_5g30550
malus_domestica	MD08G1222600.v1.1
prunus_persica	Prupe.1G560400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0225371
rosa_laevigata	RLG00000001822
rosa_multiflora	Rmu_co8454263.1_g000001
rosa_rugosa	Rorug04G0023000 Rorug07G0229100
rosa_samantha	Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana	Rw7G031630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
AccB1I	GGYRCC	2 cut(s)	421, 715
AciI	CCGC	2 cut(s)	401, 433
AclWI	GGATC	2 cut(s)	635, 643
AcoI	YGGCCR	2 cut(s)	174, 465
AcsI	RAATTY	1 cut(s)	963
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	4 cut(s)	141, 632, 695, 872
AgsI	TTSAA	3 cut(s)	231, 299, 453
AjnI	CCWGG	2 cut(s)	462, 625
AluBI	AGCT	4 cut(s)	149, 587, 673, 808
AluI	AGCT	4 cut(s)	149, 587, 673, 808
Alw21I	GWGCWC	1 cut(s)	675
AlwI	GGATC	2 cut(s)	635, 643
AoxI	GGCC	8 cut(s)	64, 120, 174, 369, 407, 465, 888, 919
ApeKI	GCWGC	3 cut(s)	149, 377, 563
ApoI	RAATTY	1 cut(s)	963
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
Asp700I	GAANNNNTTC	1 cut(s)	967
AspS9I	GGNCC	5 cut(s)	64, 407, 544, 875, 919
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	482, 710
AvaII	GGWCC	2 cut(s)	544, 875
BanI	GGYRCC	2 cut(s)	421, 715
BanII	GRGCYC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	136, 364, 550
BccI	CCATC	2 cut(s)	218, 910
BceAI	ACGGC	2 cut(s)	119, 161
BciT130I	CCWGG	2 cut(s)	464, 627
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	3 cut(s)	15, 381, 972
BfmI	CTRYAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	150, 378, 564
BlsI	GCNGC	3 cut(s)	151, 379, 565
Bme1390I	CCNGG	3 cut(s)	143, 464, 627
Bme18I	GGWCC	2 cut(s)	544, 875
BmgT120I	GGNCC	5 cut(s)	64, 407, 544, 875, 919
BmiI	GGNNCC	3 cut(s)	191, 423, 717
BmrFI	CCNGG	3 cut(s)	143, 464, 627
BmsI	GCATC	2 cut(s)	376, 790
Bpu10I	CCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	929
BsaJI	CCNNGG	6 cut(s)	117, 340, 372, 396, 462, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 632, 695, 872
Bse118I	RCCGGY	3 cut(s)	75, 172, 467
Bse1I	ACTGG	2 cut(s)	67, 828
Bse8I	GATNNNNATC	1 cut(s)	929
BseBI	CCWGG	2 cut(s)	464, 627
BseCI	ATCGAT	1 cut(s)	905
BseDI	CCNNGG	6 cut(s)	117, 340, 372, 396, 462, 727
BseJI	GATNNNNATC	1 cut(s)	929
BseLI	CCNNNNNNNGG	4 cut(s)	141, 632, 695, 872
BseMII	CTCAG	2 cut(s)	199, 571
BseNI	ACTGG	2 cut(s)	67, 828
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	136, 364, 550
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	8 cut(s)	66, 122, 176, 371, 409, 467, 890, 921
BshNI	GGYRCC	2 cut(s)	421, 715
BshVI	ATCGAT	1 cut(s)	905
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	4 cut(s)	76, 142, 173, 468
BslFI	GGGAC	3 cut(s)	445, 543, 592
BslI	CCNNNNNNNGG	4 cut(s)	141, 632, 695, 872
BsmFI	GGGAC	3 cut(s)	445, 543, 592
BsnI	GGCC	8 cut(s)	66, 122, 176, 371, 409, 467, 890, 921
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	635, 640
Bsp19I	CCATGG	1 cut(s)	340
BspACI	CCGC	2 cut(s)	401, 433
BspANI	GGCC	8 cut(s)	66, 122, 176, 371, 409, 467, 890, 921
BspCNI	CTCAG	2 cut(s)	198, 570
BspDI	ATCGAT	1 cut(s)	905
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	191, 423, 717
BspPI	GGATC	2 cut(s)	635, 643
BspT107I	GGYRCC	2 cut(s)	421, 715
BsrFI	RCCGGY	3 cut(s)	75, 172, 467
BsrI	ACTGG	2 cut(s)	67, 828
BssAI	RCCGGY	3 cut(s)	75, 172, 467
BssECI	CCNNGG	6 cut(s)	117, 340, 372, 396, 462, 727
BssMI	GATC	2 cut(s)	635, 640
BssT1I	CCWWGG	3 cut(s)	340, 372, 396
Bst2UI	CCWGG	2 cut(s)	464, 627
Bst4CI	ACNGT	3 cut(s)	85, 324, 443
BstC8I	GCNNGC	2 cut(s)	174, 589
BstDEI	CTNAG	4 cut(s)	185, 513, 557, 981
BstDSI	CCRYGG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	638, 643
BstMBI	GATC	2 cut(s)	635, 640
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 386, 430
BstNI	CCWGG	2 cut(s)	464, 627
BstNSI	RCATGY	2 cut(s)	108, 339
BstSCI	CCNGG	3 cut(s)	141, 462, 625
BstSFI	CTRYAG	1 cut(s)	426
BstV1I	GCAGC	3 cut(s)	136, 364, 550
BstX2I	RGATCY	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	635
BstZI	CGGCCG	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	905
BsuRI	GGCC	8 cut(s)	66, 122, 176, 371, 409, 467, 890, 921
BsuTUI	ATCGAT	1 cut(s)	905
BtgI	CCRYGG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	174, 589
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	3 cut(s)	75, 172, 467
Cfr13I	GGNCC	5 cut(s)	64, 407, 544, 875, 919
ClaI	ATCGAT	1 cut(s)	905
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	4 cut(s)	105, 336, 341, 598
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	4 cut(s)	185, 513, 557, 981
DpnI	GATC	2 cut(s)	637, 642
DpnII	GATC	2 cut(s)	635, 640
EaeI	YGGCCR	2 cut(s)	174, 465
EagI	CGGCCG	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	673
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	3 cut(s)	340, 372, 396
Eco24I	GRGCYC	1 cut(s)	675
Eco47I	GGWCC	2 cut(s)	544, 875
Eco52I	CGGCCG	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	673
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	462, 625
EcoT14I	CCWWGG	3 cut(s)	340, 372, 396
EcoT38I	GRGCYC	1 cut(s)	675
ErhI	CCWWGG	3 cut(s)	340, 372, 396
FaeI	CATG	4 cut(s)	108, 339, 344, 601
FaqI	GGGAC	3 cut(s)	445, 543, 592
FatI	CATG	4 cut(s)	104, 335, 340, 597
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	150, 378, 564
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	3 cut(s)	150, 378, 564
FspBI	CTAG	3 cut(s)	15, 381, 972
GluI	GCNGC	3 cut(s)	150, 378, 564
HaeIII	GGCC	8 cut(s)	66, 122, 176, 371, 409, 467, 890, 921
HapII	CCGG	4 cut(s)	76, 142, 173, 468
Hin1II	CATG	4 cut(s)	108, 339, 344, 601
HinfI	GANTC	7 cut(s)	161, 491, 496, 531, 794, 842, 902
HpaII	CCGG	4 cut(s)	76, 142, 173, 468
HphI	GGTGA	2 cut(s)	482, 710
Hpy188I	TCNGA	6 cut(s)	61, 160, 538, 640, 799, 875
Hpy188III	TCNNGA	6 cut(s)	200, 235, 278, 520, 598, 934
HpyAV	CCTTC	4 cut(s)	275, 520, 535, 888
HpyCH4III	ACNGT	3 cut(s)	85, 324, 443
HpyCH4V	TGCA	3 cut(s)	359, 763, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 386, 430
HpyF3I	CTNAG	4 cut(s)	185, 513, 557, 981
Hsp92II	CATG	4 cut(s)	108, 339, 344, 601
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	635, 640
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	3 cut(s)	136, 364, 550
LweI	GCATC	2 cut(s)	376, 790
MaeI	CTAG	3 cut(s)	15, 381, 972
MaeIII	GTNAC	2 cut(s)	275, 550
MalI	GATC	2 cut(s)	637, 642
MboI	GATC	2 cut(s)	635, 640
MboII	GAAGA	1 cut(s)	586
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	2 cut(s)	573, 963
MlyI	GAGTC	2 cut(s)	525, 836
MmeI	TCCRAC	3 cut(s)	39, 306, 668
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	967
MseI	TTAA	2 cut(s)	72, 705
MspI	CCGG	4 cut(s)	76, 142, 173, 468
MspR9I	CCNGG	3 cut(s)	143, 464, 627
MunI	CAATTG	1 cut(s)	573
MvaI	CCWGG	2 cut(s)	464, 627
MwoI	GCNNNNNNNGC	3 cut(s)	377, 386, 430
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	635, 640
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	108, 339, 344, 601
NlaIV	GGNNCC	3 cut(s)	191, 423, 717
NmeAIII	GCCGAG	2 cut(s)	142, 435
NmuCI	GTSAC	2 cut(s)	275, 550
NspI	RCATGY	2 cut(s)	108, 339
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 207
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	967
PfeI	GAWTC	5 cut(s)	161, 491, 496, 794, 902
PflFI	GACNNNGTC	2 cut(s)	443, 548
PfoI	TCCNGGA	2 cut(s)	141, 625
PkrI	GCNGC	3 cut(s)	151, 379, 565
PleI	GAGTC	2 cut(s)	525, 836
PpsI	GAGTC	2 cut(s)	525, 836
PpuMI	RGGWCCY	1 cut(s)	544
PsiI	TTATAA	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	675
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	462, 625
PspGI	CCWGG	2 cut(s)	462, 625
PspN4I	GGNNCC	3 cut(s)	191, 423, 717
PspPI	GGNCC	5 cut(s)	64, 407, 544, 875, 919
PspPPI	RGGWCCY	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	635
PsyI	GACNNNGTC	2 cut(s)	443, 548
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	675
SaqAI	TTAA	2 cut(s)	72, 705
SatI	GCNGC	3 cut(s)	150, 378, 564
Sau3AI	GATC	2 cut(s)	635, 640
Sau96I	GGNCC	5 cut(s)	64, 407, 544, 875, 919
SchI	GAGTC	2 cut(s)	525, 836
ScrFI	CCNGG	3 cut(s)	143, 464, 627
SduI	GDGCHC	1 cut(s)	675
SetI	ASST	9 cut(s)	151, 423, 549, 589, 675, 810, 871, 880, 952
SfaNI	GCATC	2 cut(s)	376, 790
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	544, 875
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	2 cut(s)	573, 963
SsiI	CCGC	2 cut(s)	401, 433
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	3 cut(s)	15, 381, 972
SstI	GAGCTC	1 cut(s)	675
StyD4I	CCNGG	3 cut(s)	141, 462, 625
StyI	CCWWGG	3 cut(s)	340, 372, 396
TaaI	ACNGT	3 cut(s)	85, 324, 443
TaqI	TCGA	4 cut(s)	494, 885, 900, 905
TaqII	GACCGA	1 cut(s)	741
TasI	AATT	2 cut(s)	573, 963
TfiI	GAWTC	5 cut(s)	161, 491, 496, 794, 902
Tru1I	TTAA	2 cut(s)	72, 705
Tru9I	TTAA	2 cut(s)	72, 705
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	2 cut(s)	275, 550
TseI	GCWGC	3 cut(s)	149, 377, 563
Tsp45I	GTSAC	2 cut(s)	275, 550
TspDTI	ATGAA	2 cut(s)	586, 834
TspRI	CASTG	1 cut(s)	565
Tth111I	GACNNNGTC	2 cut(s)	443, 548
VpaK11BI	GGWCC	2 cut(s)	544, 875
XapI	RAATTY	1 cut(s)	963
XceI	RCATGY	2 cut(s)	108, 339
XmnI	GAANNNNTTC	1 cut(s)	967
XspI	CTAG	3 cut(s)	15, 381, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.