Rorug07G0229100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015297
Physical Location & Seq
Forward (+)
20984964 .. 20987937
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0229100.1

Sequence Viewer

Length: 1011 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTAGTAGCAATGGTTTTTCATGGCACTGAATCTTTCAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAGGATCCTCGGATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGCTTTGGAGGCATCACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTCATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCAGTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCCGCTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGATCTATGATGTGAACTTCAGAGGACAGTATGAAATATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCACTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACCGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACACCTAG

Protein Analysis

336

Amino Acids

37.77

Weight (kDa)

6.66

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 294 2.8e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25980 AT4G25980
fragaria_vesca FvH4_4g07570 FvH4_5g30550
malus_domestica MD08G1222600.v1.1
prunus_persica Prupe.1G560400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0225371
rosa_laevigata RLG00000001822
rosa_multiflora Rmu_co8454263.1_g000001
rosa_rugosa Rorug04G0023000 Rorug07G0229100
rosa_samantha Rh7AG374300 Rh7BG363800 Rh7CG392500 Rh7DG375000
rosa_wichuraiana Rw7G031630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 479
AccBSI CCGCTC 1 cut(s) 500
AciI CCGC 1 cut(s) 498
AclWI GGATC 4 cut(s) 161, 174, 635, 859
AcsI RAATTY 2 cut(s) 295, 505
AcuI CTGAAG 3 cut(s) 457, 601, 628
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
AgsI TTSAA 2 cut(s) 149, 538
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 252, 429, 471
AluI AGCT 3 cut(s) 252, 429, 471
Alw26I GTCTC 2 cut(s) 447, 555
AlwI GGATC 4 cut(s) 161, 174, 635, 859
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 283, 422
ApeKI GCWGC 3 cut(s) 179, 392, 914
ApoI RAATTY 2 cut(s) 295, 505
Asp700I GAANNNNTTC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 80, 284, 422
AsuHPI GGTGA 3 cut(s) 256, 946, 952
AvaII GGWCC 1 cut(s) 80
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 479
BauI CACGAG 1 cut(s) 396
BbvI GCAGC 3 cut(s) 166, 379, 901
BccI CCATC 3 cut(s) 71, 169, 934
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 447, 555
BfaI CTAG 5 cut(s) 383, 426, 443, 821, 1009
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 3 cut(s) 180, 393, 915
BlsI GCNGC 3 cut(s) 181, 394, 916
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 80, 284, 422
BmiI GGNNCC 3 cut(s) 168, 286, 481
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 4 cut(s) 220, 242, 270, 419
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 170, 805
BsaWI WCCGGW 1 cut(s) 962
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 170, 805
BseGI GGATG 3 cut(s) 180, 439, 492
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 3 cut(s) 166, 379, 901
BseYI CCCAGC 1 cut(s) 429
BshFI GGCC 2 cut(s) 285, 424
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 1 cut(s) 963
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BsmAI GTCTC 2 cut(s) 447, 555
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 2 cut(s) 285, 424
Bsp143I GATC 6 cut(s) 166, 322, 327, 627, 850, 864
BspACI CCGC 1 cut(s) 498
BspANI GGCC 2 cut(s) 285, 424
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 2 cut(s) 205, 853
BspLI GGNNCC 3 cut(s) 168, 286, 481
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 4 cut(s) 161, 174, 635, 859
BspT107I GGYRCC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 170, 805
BssMI GATC 6 cut(s) 166, 322, 327, 627, 850, 864
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 805
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 364, 654, 708
Bst6I CTCTTC 2 cut(s) 120, 339
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
BstENI CCTNNNNNAGG 2 cut(s) 344, 872
BstF5I GGATG 3 cut(s) 180, 439, 492
BstKTI GATC 6 cut(s) 169, 325, 330, 630, 853, 867
BstMAI GTCTC 2 cut(s) 447, 555
BstMBI GATC 6 cut(s) 166, 322, 327, 627, 850, 864
BstMWI GCNNNNNNNGC 3 cut(s) 258, 392, 920
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 166, 379, 901
BstX2I RGATCY 3 cut(s) 166, 627, 864
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 3 cut(s) 166, 627, 864
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 285, 424
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 180, 439, 492
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 6 cut(s) 54, 73, 274, 393, 481, 891
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 2 cut(s) 205, 853
Cfr13I GGNCC 3 cut(s) 80, 284, 422
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 673
CviAII CATG 5 cut(s) 50, 206, 220, 369, 854
CviQI GTAC 1 cut(s) 673
DpnI GATC 6 cut(s) 168, 324, 329, 629, 852, 866
DpnII GATC 6 cut(s) 166, 322, 327, 627, 850, 864
DraI TTTAAA 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 120, 339
EarI CTCTTC 2 cut(s) 120, 339
Eco130I CCWWGG 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 3 cut(s) 457, 601, 628
EcoNI CCTNNNNNAGG 2 cut(s) 344, 872
EcoO109I RGGNCCY 2 cut(s) 284, 422
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 805
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 5 cut(s) 53, 209, 223, 372, 857
FaqI GGGAC 1 cut(s) 561
FatI CATG 5 cut(s) 49, 205, 219, 368, 853
FauI CCCGC 1 cut(s) 505
FauNDI CATATG 1 cut(s) 713
Fnu4HI GCNGC 3 cut(s) 180, 393, 915
FokI GGATG 3 cut(s) 187, 446, 479
Fsp4HI GCNGC 3 cut(s) 180, 393, 915
FspBI CTAG 5 cut(s) 383, 426, 443, 821, 1009
GluI GCNGC 3 cut(s) 180, 393, 915
GsaI CCCAGC 1 cut(s) 433
HaeIII GGCC 2 cut(s) 285, 424
HapII CCGG 1 cut(s) 963
Hin1II CATG 5 cut(s) 53, 209, 223, 372, 857
HincII GTYRAC 2 cut(s) 796, 1003
HindII GTYRAC 2 cut(s) 796, 1003
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 4 cut(s) 59, 401, 455, 699
HpaII CCGG 1 cut(s) 963
HphI GGTGA 3 cut(s) 256, 946, 952
Hpy166II GTNNAC 3 cut(s) 640, 796, 1003
Hpy188I TCNGA 5 cut(s) 174, 327, 647, 695, 829
Hpy188III TCNNGA 8 cut(s) 25, 92, 206, 398, 414, 752, 854, 982
Hpy8I GTNNAC 3 cut(s) 640, 796, 1003
HpyAV CCTTC 4 cut(s) 4, 200, 700, 851
HpyCH4III ACNGT 3 cut(s) 364, 654, 708
HpyCH4V TGCA 7 cut(s) 155, 199, 233, 410, 463, 917, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 392, 920
Hsp92II CATG 5 cut(s) 53, 209, 223, 372, 857
Kzo9I GATC 6 cut(s) 166, 322, 327, 627, 850, 864
LmnI GCTCC 2 cut(s) 4, 505
Lsp1109I GCAGC 3 cut(s) 166, 379, 901
LweI GCATC 4 cut(s) 220, 242, 270, 419
MaeI CTAG 5 cut(s) 383, 426, 443, 821, 1009
MaeIII GTNAC 1 cut(s) 841
MalI GATC 6 cut(s) 168, 324, 329, 629, 852, 866
MbiI CCGCTC 1 cut(s) 500
MboI GATC 6 cut(s) 166, 322, 327, 627, 850, 864
MboII GAAGA 5 cut(s) 137, 356, 708, 949, 997
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 3 cut(s) 166, 627, 864
MluCI AATT 5 cut(s) 295, 505, 532, 591, 988
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 2 cut(s) 162, 611
MslI CAYNNNNRTG 2 cut(s) 204, 789
MspI CCGG 1 cut(s) 963
MspR9I CCNGG 1 cut(s) 341
MssI GTTTAAAC 1 cut(s) 612
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 258, 392, 920
NdeI CATATG 1 cut(s) 713
NdeII GATC 6 cut(s) 166, 322, 327, 627, 850, 864
NlaIII CATG 5 cut(s) 53, 209, 223, 372, 857
NlaIV GGNNCC 3 cut(s) 168, 286, 481
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 2 cut(s) 205, 853
PaqCI CACCTGC 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 59, 401, 699
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 3 cut(s) 181, 394, 916
PleI GAGTC 1 cut(s) 449
PmeI GTTTAAAC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 168, 286, 481
PspPI GGNCC 3 cut(s) 80, 284, 422
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 3 cut(s) 166, 627, 864
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 204, 789
SaqAI TTAA 2 cut(s) 162, 611
SatI GCNGC 3 cut(s) 180, 393, 915
Sau3AI GATC 6 cut(s) 166, 322, 327, 627, 850, 864
Sau96I GGNCC 3 cut(s) 80, 284, 422
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 4 cut(s) 220, 242, 270, 419
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 204, 789
Sse9I AATT 5 cut(s) 295, 505, 532, 591, 988
SsiI CCGC 1 cut(s) 498
SspMI CTAG 5 cut(s) 383, 426, 443, 821, 1009
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 3 cut(s) 364, 654, 708
TaqI TCGA 2 cut(s) 321, 413
TasI AATT 5 cut(s) 295, 505, 532, 591, 988
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 3 cut(s) 59, 401, 699
Tru1I TTAA 2 cut(s) 162, 611
Tru9I TTAA 2 cut(s) 162, 611
TscAI CASTG 6 cut(s) 61, 73, 274, 393, 481, 898
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 3 cut(s) 179, 392, 914
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 5 cut(s) 38, 194, 481, 672, 870
TspRI CASTG 6 cut(s) 61, 73, 274, 393, 481, 898
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 2 cut(s) 344, 872
XapI RAATTY 2 cut(s) 295, 505
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 5 cut(s) 383, 426, 443, 821, 1009
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.