Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Forward (+)

13346654 .. 13349142

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAGCGAAACCGAAGCAACCGGCGTTACCGATGATTCGGCTCCAGCGATTGAGACTGAAACTGTTTCTGATGCGATGGAGCATACAGCGATCGGAGTGGTTGAATCGGTGGAAGGAGCCATAGAAGGAGCAGAGAAATGGGTGGGTGATTTGCAACGGACGGTGAAGGAATCGAAGGATACCGCAATGCGTTCTGCTCGTTCCCTCCGTGAAAATTCTACCTCTCAGTTCCGCTCTATACAGGATTTCATTCCACATGCTTTGACTCAGTATAAGACCTATGAGAATGCTTTCTTCAGTAAAGTTACAGACGAATTGATATACGCAAAAGAGCATCCGGCTGCTGCTATTGGGATTGGTGTCGCTGCTAGTCTCGTTCTGATGCGAGGCCCAAGAAGATTCTTGTTTCGTAATACACTAGGCCGATTTCAGAGCGAAGAGGCACAATTCTTGAAAGCTGAGAAGCATGTTCAGGAGTTAAACATGTCTGTAGACTTGATGAAAAAGGAGAGCAGGAAATTGCTTGAGAGGACGGCTTTAGCAGAGAAGGATATGAAACGTGGTCTCTCTGAGCTCATGAACTCTGGAAACGATATACATCGTCTTGCTAAGTCCGTCCACAAAGCTGAATGTGAAGCTGCTGATTTGATGGACGGACTTCGGCAAATTCCTGGAAGGGATGCTATCAAGCTTAGAGCTGAAGTGGCTTCCATGACTTCGCTTTTGAGACAGAAGAGGATTGCATTGAACAAAAGGATCATGGGTATGTCGGACCTAGGAGTTTCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.2

Weight (kDa)

6.63

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	234
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	2 cut(s)	183, 232
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	214, 666
AcuI	CTGAAG	2 cut(s)	280, 720
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	104, 454, 748
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	6 cut(s)	458, 574, 626, 638, 691, 698
AluI	AGCT	6 cut(s)	458, 574, 626, 638, 691, 698
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	4 cut(s)	47, 377, 569, 721
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	2 cut(s)	388, 421
ApeKI	GCWGC	4 cut(s)	341, 344, 365, 638
ApoI	RAATTY	2 cut(s)	214, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	706, 738
Asp700I	GAANNNNTTC	1 cut(s)	290
AspA2I	CCTAGG	1 cut(s)	775
AspS9I	GGNCC	2 cut(s)	389, 772
AsuHPI	GGTGA	2 cut(s)	158, 175
AvaII	GGWCC	1 cut(s)	772
AvrII	CCTAGG	1 cut(s)	775
BanII	GRGCYC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	328, 331, 352, 625
BccI	CCATC	2 cut(s)	70, 643
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	1 cut(s)	672
BciVI	GTATCC	1 cut(s)	172
BcoDI	GTCTC	4 cut(s)	47, 377, 569, 721
BfaI	CTAG	3 cut(s)	369, 419, 776
BfmI	CTRYAG	1 cut(s)	489
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	4 cut(s)	342, 345, 366, 639
BlnI	CCTAGG	1 cut(s)	775
BlsI	GCNGC	4 cut(s)	343, 346, 367, 640
Bme1390I	CCNGG	1 cut(s)	672
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	389, 772
BmiI	GGNNCC	2 cut(s)	42, 118
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	4 cut(s)	61, 343, 372, 670
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	775
BsaXI	ACNNNNNCTCC	1 cut(s)	771
Bse118I	RCCGGY	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	2 cut(s)	334, 685
BseJI	GATNNNNATC	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	4 cut(s)	239, 281, 450, 561
BseXI	GCAGC	4 cut(s)	328, 331, 352, 625
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	390, 423
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	21, 338
BsmAI	GTCTC	4 cut(s)	47, 377, 569, 721
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	390, 423
Bso31I	GGTCTC	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	2 cut(s)	90, 756
BspACI	CCGC	2 cut(s)	183, 232
BspANI	GGCC	2 cut(s)	390, 423
BspCNI	CTCAG	4 cut(s)	238, 280, 451, 562
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	42, 118
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	2 cut(s)	90, 756
BssT1I	CCWWGG	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	2 cut(s)	64, 163
Bst6I	CTCTTC	2 cut(s)	432, 728
BstDEI	CTNAG	6 cut(s)	225, 267, 459, 570, 609, 692
BstF5I	GGATG	2 cut(s)	334, 685
BstKTI	GATC	2 cut(s)	93, 759
BstMAI	GTCTC	4 cut(s)	47, 377, 569, 721
BstMBI	GATC	2 cut(s)	90, 756
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	3 cut(s)	260, 470, 487
BstSCI	CCNGG	1 cut(s)	670
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	4 cut(s)	328, 331, 352, 625
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	390, 423
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	334, 685
CciI	TCATGA	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	389, 772
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	6 cut(s)	257, 467, 484, 577, 712, 760
DdeI	CTNAG	6 cut(s)	225, 267, 459, 570, 609, 692
DpnI	GATC	2 cut(s)	92, 758
DpnII	GATC	2 cut(s)	90, 756
Eam1104I	CTCTTC	2 cut(s)	432, 728
EarI	CTCTTC	2 cut(s)	432, 728
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	1 cut(s)	576
Eco31I	GGTCTC	1 cut(s)	569
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	574
Eco57I	CTGAAG	2 cut(s)	280, 720
EcoICRI	GAGCTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	6 cut(s)	260, 470, 487, 580, 715, 763
FatI	CATG	6 cut(s)	256, 466, 483, 576, 711, 759
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	4 cut(s)	342, 345, 366, 639
FokI	GGATG	2 cut(s)	321, 692
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	4 cut(s)	342, 345, 366, 639
FspBI	CTAG	3 cut(s)	369, 419, 776
GluI	GCNGC	4 cut(s)	342, 345, 366, 639
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	390, 423
HapII	CCGG	2 cut(s)	21, 338
Hin1II	CATG	6 cut(s)	260, 470, 487, 580, 715, 763
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	5 cut(s)	35, 104, 170, 265, 399
HpaII	CCGG	2 cut(s)	21, 338
HphI	GGTGA	2 cut(s)	158, 175
Hpy166II	GTNNAC	2 cut(s)	493, 619
Hpy188I	TCNGA	7 cut(s)	70, 95, 381, 432, 571, 772, 791
Hpy188III	TCNNGA	4 cut(s)	451, 473, 577, 585
Hpy8I	GTNNAC	2 cut(s)	493, 619
HpyAV	CCTTC	6 cut(s)	107, 119, 160, 169, 541, 669
HpyCH4III	ACNGT	2 cut(s)	64, 163
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	2 cut(s)	154, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	6 cut(s)	225, 267, 459, 570, 609, 692
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	6 cut(s)	260, 470, 487, 580, 715, 763
Kzo9I	GATC	2 cut(s)	90, 756
LmnI	GCTCC	4 cut(s)	46, 79, 116, 128
LpnPI	CCDG	9 cut(s)	34, 57, 227, 351, 458, 499, 570, 657, 684
Lsp1109I	GCAGC	4 cut(s)	328, 331, 352, 625
LweI	GCATC	4 cut(s)	61, 343, 372, 670
MaeI	CTAG	3 cut(s)	369, 419, 776
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	25, 304
MalI	GATC	2 cut(s)	92, 758
MbiI	CCGCTC	1 cut(s)	234
MboI	GATC	2 cut(s)	90, 756
MboII	GAAGA	4 cut(s)	286, 408, 449, 745
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	5 cut(s)	214, 314, 446, 518, 666
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	6 cut(s)	215, 232, 380, 433, 522, 729
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	2 cut(s)	21, 338
MspR9I	CCNGG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	1 cut(s)	704
NdeII	GATC	2 cut(s)	90, 756
NlaIII	CATG	6 cut(s)	260, 470, 487, 580, 715, 763
NlaIV	GGNNCC	2 cut(s)	42, 118
NspI	RCATGY	3 cut(s)	260, 470, 487
PagI	TCATGA	1 cut(s)	576
PciI	ACATGT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	2 cut(s)	44, 205
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	4 cut(s)	35, 104, 170, 399
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	4 cut(s)	343, 346, 367, 640
Ple19I	CGATCG	1 cut(s)	93
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	2 cut(s)	42, 118
PspPI	GGNCC	2 cut(s)	389, 772
PvuI	CGATCG	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	764
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	4 cut(s)	342, 345, 366, 639
Sau3AI	GATC	2 cut(s)	90, 756
Sau96I	GGNCC	2 cut(s)	389, 772
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	4 cut(s)	61, 343, 372, 670
SfcI	CTRYAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	5 cut(s)	214, 314, 446, 518, 666
SsiI	CCGC	2 cut(s)	183, 232
SspMI	CTAG	3 cut(s)	369, 419, 776
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	2 cut(s)	64, 163
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	1 cut(s)	173
TasI	AATT	5 cut(s)	214, 314, 446, 518, 666
TfiI	GAWTC	4 cut(s)	35, 104, 170, 399
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	4 cut(s)	341, 344, 365, 638
TspDTI	ATGAA	4 cut(s)	238, 515, 569, 593
TspGWI	ACGGA	5 cut(s)	172, 197, 604, 669, 775
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	214, 666
XceI	RCATGY	3 cut(s)	260, 470, 487
XmaJI	CCTAGG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	3 cut(s)	369, 419, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.