Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Reverse (-)

129121 .. 130748

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAGAGACGATGCCGACGCCGTCACCGTCGGAGCAAGGGGAGCAGGTGAATACGAATGTTGATAATGACCAGAAAGATAGCCAACAGGGGGCGGGAGCATCAGCATCGTCCAATTCCAATGCCAACATGGCATTGGCAGCAACGATGGCGGAGGATCTGCAGCGTACGGTGATGGAATCCACGGACTCCGCCGTCCGCTCAGCTCGGTATATCCAACATCACTTGCCCCAGTATATCGGCAAAGCCGTCGACAATTACAGGATCTACGAGCATGCTTTCTTCACCAAGATCAAAGAAGGGTTGACGAGTGCAATAGAAAACCCAGCACCAACGCTTGGAATTGGTCTCACTGCCGCCTTCCTTGTTTTGCCAGGTCCAAGAAGGTTCCTGTTTCGCCAGACATTTCGTCGACTTCAGAGCGAGGAGGCACAATTTCTTAGCGCTGAAAAGAGTGTAAAGGAGTTGAACCTTTCAGTTGATTTGATGAAGAAGGAGAGCAAGAAACTTCTTGAAAGGGCACTACTTGCTGAAAAGGATATGACATATGGCCATAATGATCTCATGGATGTCGGAAGACAAATCCAACACCTATCTAAATCTGTTCATAAGGTTGAATCTCAAGCTTCAGATTTAATGGATGGGCTGCGGGAAATTCCTAATAGGGAGGCTTTGAAGCTTAGAGCAGAGGTTGCATCAATGACATCGATCTTGAAACGTCAGAGGTCTGTGCTGGACAAACACATAATGAAGATTTCAGAATTAGGACTCCCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

28.84

Weight (kDa)

7.08

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	201
AccI	GTMKAC	2 cut(s)	252, 412
AciI	CCGC	6 cut(s)	95, 152, 192, 199, 357, 649
AclWI	GGATC	2 cut(s)	165, 272
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	2 cut(s)	401, 612
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	169
AfeI	AGCGCT	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	91, 338
AgsI	TTSAA	5 cut(s)	469, 515, 617, 676, 715
AhdI	GACNNNNNGTC	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	3 cut(s)	206, 626, 679
AluI	AGCT	3 cut(s)	206, 626, 679
Alw26I	GTCTC	2 cut(s)	2, 353
AlwI	GGATC	2 cut(s)	165, 272
Aor51HI	AGCGCT	1 cut(s)	445
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	140, 163, 646
ApoI	RAATTY	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	4 cut(s)	18, 61, 184, 277
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	152, 175, 633
BccI	CCATC	3 cut(s)	142, 169, 635
BceAI	ACGGC	3 cut(s)	7, 179, 233
BcgI	CGANNNNNNTGC	4 cut(s)	90, 124, 232, 266
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	2, 353
BfmI	CTRYAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	447
BfuAI	ACCTGC	1 cut(s)	37
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	141, 164, 357, 647
BlpI	GCTNAGC	1 cut(s)	202
BlsI	GCNGC	4 cut(s)	142, 165, 358, 648
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	377
BmeRI	GACNNNNNGTC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	2 cut(s)	226, 767
BmsI	GCATC	4 cut(s)	3, 110, 116, 704
BmuI	ACTGGG	2 cut(s)	226, 767
BpiI	GAAGAC	1 cut(s)	583
Bpu1102I	GCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	707
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 338
Bse1I	ACTGG	2 cut(s)	232, 773
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	574, 646
BseLI	CCNNNNNNNGG	2 cut(s)	91, 338
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	232, 773
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	3 cut(s)	152, 175, 633
BseYI	CCCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	552
BshVI	ATCGAT	1 cut(s)	707
BsiWI	CGTACG	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	91, 338
BsmAI	GTCTC	2 cut(s)	2, 353
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	552
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	5 cut(s)	157, 264, 291, 559, 708
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	6 cut(s)	95, 152, 192, 199, 357, 649
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	165, 272
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	232, 773
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	157, 264, 291, 559, 708
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	30, 172
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	2 cut(s)	527, 692
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	202, 440, 680
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	574, 646
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	5 cut(s)	160, 267, 294, 562, 711
BstMAI	GTCTC	2 cut(s)	2, 353
BstMBI	GATC	5 cut(s)	157, 264, 291, 559, 708
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 131, 140, 149, 527, 692
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	3 cut(s)	152, 175, 633
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	2 cut(s)	157, 264
BstYI	RGATCY	2 cut(s)	157, 264
Bsu15I	ATCGAT	1 cut(s)	707
BsuRI	GGCC	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	707
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	574, 646
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 780
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	707
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	3 cut(s)	130, 275, 565
CviJI	RGCY	8 cut(s)	84, 206, 248, 552, 626, 646, 671, 679
CviKI_1	RGCY	8 cut(s)	84, 206, 248, 552, 626, 646, 671, 679
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	3 cut(s)	202, 440, 680
DpnI	GATC	5 cut(s)	159, 266, 293, 561, 710
DpnII	GATC	5 cut(s)	157, 264, 291, 559, 708
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	408
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	550
Eam1105I	GACNNNNNGTC	1 cut(s)	408
EciI	GGCGGA	2 cut(s)	167, 181
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	401, 612
EcoRII	CCWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	3 cut(s)	133, 278, 568
FatI	CATG	3 cut(s)	129, 274, 564
FauI	CCCGC	2 cut(s)	88, 642
FauNDI	CATATG	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	252, 412
Fnu4HI	GCNGC	4 cut(s)	141, 164, 357, 647
FokI	GGATG	2 cut(s)	581, 653
Fsp4HI	GCNGC	4 cut(s)	141, 164, 357, 647
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	4 cut(s)	141, 164, 357, 647
GsaI	CCCAGC	1 cut(s)	329
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	552
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	446
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	133, 278, 568
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	3 cut(s)	253, 306, 413
HindII	GTYRAC	3 cut(s)	253, 306, 413
HindIII	AAGCTT	2 cut(s)	624, 677
HinfI	GANTC	4 cut(s)	179, 188, 617, 768
HphI	GGTGA	4 cut(s)	18, 61, 184, 277
Hpy166II	GTNNAC	3 cut(s)	253, 306, 413
Hpy188I	TCNGA	6 cut(s)	34, 420, 575, 631, 723, 760
Hpy188III	TCNNGA	2 cut(s)	512, 712
Hpy8I	GTNNAC	3 cut(s)	253, 306, 413
Hpy99I	CGWCG	4 cut(s)	22, 34, 254, 414
HpyAV	CCTTC	4 cut(s)	293, 370, 378, 487
HpyCH4III	ACNGT	2 cut(s)	30, 172
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	3 cut(s)	163, 314, 695
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 131, 140, 149, 527, 692
HpyF3I	CTNAG	3 cut(s)	202, 440, 680
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	133, 278, 568
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	5 cut(s)	157, 264, 291, 559, 708
LmnI	GCTCC	3 cut(s)	34, 43, 98
Lsp1109I	GCAGC	3 cut(s)	152, 175, 633
LweI	GCATC	4 cut(s)	3, 110, 116, 704
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	5 cut(s)	159, 266, 293, 561, 710
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	5 cut(s)	157, 264, 291, 559, 708
MboII	GAAGA	4 cut(s)	274, 502, 588, 763
MflI	RGATCY	2 cut(s)	157, 264
MhlI	GDGCHC	1 cut(s)	523
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	6 cut(s)	115, 256, 342, 434, 654, 761
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	182, 762
MmeI	TCCRAC	4 cut(s)	12, 241, 553, 610
MnlI	CCTC	6 cut(s)	148, 418, 421, 661, 682, 717
Mox20I	TGGCCA	1 cut(s)	552
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	552
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	6 cut(s)	43, 131, 140, 149, 527, 692
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	5 cut(s)	157, 264, 291, 559, 708
NlaIII	CATG	3 cut(s)	133, 278, 568
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	278
PaeI	GCATGC	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 246
PfeI	GAWTC	2 cut(s)	179, 617
Pfl23II	CGTACG	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	142, 165, 358, 648
PleI	GAGTC	2 cut(s)	182, 762
PpsI	GAGTC	2 cut(s)	182, 762
Psp6I	CCWGG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	373
PspLI	CGTACG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	377
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	2 cut(s)	157, 264
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SalI	GTCGAC	2 cut(s)	251, 411
SaqAI	TTAA	1 cut(s)	635
SatI	GCNGC	4 cut(s)	141, 164, 357, 647
Sau3AI	GATC	5 cut(s)	157, 264, 291, 559, 708
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	182, 762
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	523
SfaNI	GCATC	4 cut(s)	3, 110, 116, 704
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	6 cut(s)	115, 256, 342, 434, 654, 761
SsiI	CCGC	6 cut(s)	95, 152, 192, 199, 357, 649
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	30, 172
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	3 cut(s)	252, 412, 707
TasI	AATT	6 cut(s)	115, 256, 342, 434, 654, 761
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	2 cut(s)	179, 617
Tru1I	TTAA	1 cut(s)	635
Tru9I	TTAA	1 cut(s)	635
TscAI	CASTG	2 cut(s)	358, 780
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	3 cut(s)	140, 163, 646
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	503, 596, 764
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	2 cut(s)	358, 780
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	1 cut(s)	654
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 133
XmiI	GTMKAC	2 cut(s)	252, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.