Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Reverse (-)

228087 .. 230158

Gene Structure 2072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGGAGACGACGCCGTCGCCGTCATCATCAACGTGGGAGCAAGGGGAACAGGTGAATGTGAATAGTAGTAATATGAGTTTAGGAAAGGGTGATGATGATGAAAAGAATGGGCAAGAGGCAGCAGCATCAGCTTCTTCAGTGGCAATGGCAGCATCGATGGCGGAGGATCTGCAGCGTACGGTCATGCAATCCACGGACTCTGCCATTCGTTCAGCTCGCTCTCTCCAACACCACTTGCCCCAATATGTCGAAAAAGCTGTCTCCGACTACAGGACCTACGAAAATGCTTTCTTCACCAAGATCAAAGAAGGGTTGATGAGTGCAAGAGAGCACCCGACCTCAACTCTTGGAATTGGTCTTACTGCTGCCTTCCTTCTTTTGCCAGGACCAAGAAGGTTCTTCATCCGCCAGACATTTAGTCGACTTCAGAGTGAGGAGGCACAATTTGTTAGAGCTGAGAAGAATGTAAAGGAGCTAAATCTTTCAGTTGATTTGATGAAGAAGGAGAGCAAGAAACTTCTTGAAAGGGCACTTCTTGCTGAAAAGGATATGAAATATGGCCAGACTGATCTCATGGATGTGGGAAGTCAAATTCAATCTCTATCTAAATCTGTTCACAAGGTTGAATCCCAAGCTGCAGATTTAATGGATGGGCTGCGAGAAATTCCTAATAGGGAGGCCTTGAAGCTTAGAGCAGAGGTTGCTTCAATGGCATCAGTTTTGAAAAGGCAGAGGTCTGTGCTGGACAAACGGATAATGAAGATCTCGGAACTAGGACTTCCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.15

Weight (kDa)

7.88

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	3 cut(s)	5, 164, 409
AclWI	GGATC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	594, 666
AcuI	CTGAAG	2 cut(s)	123, 413
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	6 cut(s)	527, 599, 629, 688, 711, 727
AhdI	GACNNNNNGTC	1 cut(s)	420
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	7 cut(s)	134, 218, 260, 458, 478, 638, 691
AluI	AGCT	7 cut(s)	134, 218, 260, 458, 478, 638, 691
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	2, 268
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	562, 681
ApeKI	GCWGC	7 cut(s)	122, 125, 152, 175, 368, 638, 658
ApoI	RAATTY	2 cut(s)	594, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspS9I	GGNCC	2 cut(s)	276, 389
AsuHPI	GGTGA	3 cut(s)	67, 104, 289
AvaII	GGWCC	2 cut(s)	276, 389
BaeGI	GKGCMC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	7 cut(s)	134, 137, 164, 187, 355, 625, 645
BccI	CCATC	2 cut(s)	154, 647
BceAI	ACGGC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	387
BcoDI	GTCTC	2 cut(s)	2, 268
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	3 cut(s)	173, 271, 639
BglII	AGATCT	1 cut(s)	765
BisI	GCNGC	7 cut(s)	123, 126, 153, 176, 369, 639, 659
BlsI	GCNGC	7 cut(s)	124, 127, 154, 177, 370, 640, 660
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	2 cut(s)	276, 389
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	276, 389
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	3 cut(s)	137, 164, 725
Bsa29I	ATCGAT	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	785
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	387
BseCI	ATCGAT	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	3 cut(s)	405, 586, 658
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	7 cut(s)	134, 137, 164, 187, 355, 625, 645
BshFI	GGCC	2 cut(s)	564, 683
BshVI	ATCGAT	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	336
BsiWI	CGTACG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	2, 268
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	2 cut(s)	564, 683
Bsp1286I	GDGCHC	2 cut(s)	336, 535
Bsp143I	GATC	4 cut(s)	169, 303, 571, 765
BspACI	CCGC	3 cut(s)	5, 164, 409
BspANI	GGCC	2 cut(s)	564, 683
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	158
BspMAI	CTGCAG	2 cut(s)	177, 643
BspPI	GGATC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	4 cut(s)	169, 303, 571, 765
BssNI	GRCGYC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	2 cut(s)	539, 704
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	459, 692
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	405, 586, 658
BstKTI	GATC	4 cut(s)	172, 306, 574, 768
BstMAI	GTCTC	2 cut(s)	2, 268
BstMBI	GATC	4 cut(s)	169, 303, 571, 765
BstMWI	GCNNNNNNNGC	6 cut(s)	131, 152, 161, 539, 704, 713
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	3 cut(s)	173, 271, 639
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	7 cut(s)	134, 137, 164, 187, 355, 625, 645
BstX2I	RGATCY	2 cut(s)	169, 765
BstYI	RGATCY	2 cut(s)	169, 765
Bsu15I	ATCGAT	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	564, 683
BsuTUI	ATCGAT	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	405, 586, 658
BtsIMutI	CAGTG	2 cut(s)	147, 792
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	276, 389
ClaI	ATCGAT	1 cut(s)	158
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	2 cut(s)	187, 577
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	459, 692
DpnI	GATC	4 cut(s)	171, 305, 573, 767
DpnII	GATC	4 cut(s)	169, 303, 571, 765
DrdI	GACNNNNNNGTC	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	420
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	562
Eam1105I	GACNNNNNGTC	1 cut(s)	420
EciI	GGCGGA	3 cut(s)	20, 179, 398
Eco147I	AGGCCT	1 cut(s)	683
Eco47I	GGWCC	2 cut(s)	276, 389
Eco57I	CTGAAG	2 cut(s)	123, 413
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	2 cut(s)	190, 580
FaiI	YATR	6 cut(s)	77, 188, 249, 554, 561, 578
FatI	CATG	2 cut(s)	186, 576
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	7 cut(s)	123, 126, 153, 176, 369, 639, 659
FokI	GGATG	3 cut(s)	392, 593, 665
Fsp4HI	GCNGC	7 cut(s)	123, 126, 153, 176, 369, 639, 659
FspBI	CTAG	1 cut(s)	776
GluI	GCNGC	7 cut(s)	123, 126, 153, 176, 369, 639, 659
HaeIII	GGCC	2 cut(s)	564, 683
HgaI	GACGC	1 cut(s)	22
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	190, 580
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	2 cut(s)	200, 629
HphI	GGTGA	3 cut(s)	67, 104, 289
Hpy166II	GTNNAC	2 cut(s)	425, 619
Hpy188I	TCNGA	3 cut(s)	268, 432, 772
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	425, 619
Hpy99I	CGWCG	2 cut(s)	16, 22
HpyAV	CCTTC	5 cut(s)	305, 382, 386, 390, 499
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	4 cut(s)	175, 190, 326, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	131, 152, 161, 539, 704, 713
HpyF3I	CTNAG	2 cut(s)	459, 692
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	190, 580
Kzo9I	GATC	4 cut(s)	169, 303, 571, 765
LmnI	GCTCC	2 cut(s)	40, 475
LpnPI	CCDG	7 cut(s)	38, 259, 372, 399, 425, 578, 731
Lsp1109I	GCAGC	7 cut(s)	134, 137, 164, 187, 355, 625, 645
LweI	GCATC	3 cut(s)	137, 164, 725
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	1 cut(s)	35
MalI	GATC	4 cut(s)	171, 305, 573, 767
MboI	GATC	4 cut(s)	169, 303, 571, 765
MboII	GAAGA	6 cut(s)	129, 286, 394, 475, 514, 775
MflI	RGATCY	2 cut(s)	169, 765
MhlI	GDGCHC	2 cut(s)	336, 535
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	4 cut(s)	354, 446, 594, 666
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	253, 291
MnlI	CCTC	8 cut(s)	112, 160, 352, 430, 433, 673, 694, 729
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	2 cut(s)	34, 581
Msp20I	TGGCCA	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	6 cut(s)	131, 152, 161, 539, 704, 713
NdeII	GATC	4 cut(s)	169, 303, 571, 765
NlaIII	CATG	2 cut(s)	190, 580
PceI	AGGCCT	1 cut(s)	683
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	629
Pfl23II	CGTACG	1 cut(s)	179
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	7 cut(s)	124, 127, 154, 177, 370, 640, 660
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspLI	CGTACG	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	276, 389
PspPPI	RGGWCCY	1 cut(s)	276
PstI	CTGCAG	2 cut(s)	177, 643
PsuI	RGATCY	2 cut(s)	169, 765
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	2 cut(s)	34, 581
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	7 cut(s)	123, 126, 153, 176, 369, 639, 659
Sau3AI	GATC	4 cut(s)	169, 303, 571, 765
Sau96I	GGNCC	2 cut(s)	276, 389
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	336, 535
SfaNI	GCATC	3 cut(s)	137, 164, 725
SfcI	CTRYAG	3 cut(s)	173, 271, 639
SinI	GGWCC	2 cut(s)	276, 389
SmiMI	CAYNNNNRTG	2 cut(s)	34, 581
Sse9I	AATT	4 cut(s)	354, 446, 594, 666
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	3 cut(s)	5, 164, 409
SspMI	CTAG	1 cut(s)	776
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	158, 252, 424
TasI	AATT	4 cut(s)	354, 446, 594, 666
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	2 cut(s)	147, 792
TseI	GCWGC	7 cut(s)	122, 125, 152, 175, 368, 638, 658
TspDTI	ATGAA	5 cut(s)	117, 394, 515, 569, 776
TspGWI	ACGGA	2 cut(s)	212, 769
TspRI	CASTG	2 cut(s)	147, 792
Tth111I	GACNNNGTC	1 cut(s)	16
VpaK11BI	GGWCC	2 cut(s)	276, 389
XapI	RAATTY	2 cut(s)	594, 666
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.