Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Forward (+)

88198396 .. 88199806

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG575100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGGAGGAGGAGCCGACGCCGACGCCGGAAGAGAAGCAGGTGAAAGGCGATGACGGCGCGTATAAGGGAGTGGCAGCAGAAGCAGAAGCAGCAGCAGCTTCAATGGCTTCGATGGCGGAGGATCTGCAGCGTACTGTGATGCAATCGAGGGACTCTGCCATTCGTTCAGCTCGCACTCTCCAAGATAATGTGCCGGAATATATGGACAAAGCCGTCTCCGACTACAGGACCTACGAACATGCTTTCTTCCACAAAATCAAAGATGGATTGAAGAGTGCAACAGAGAACCCAACCTCAACCATTGGAATTGGCCTCACTGCTGCTTTCATTCTTTTGCCAGGACCAAGAAGGTTCTTATTTCGCCATACATTGGGTCGATTTCAGAGCCTCGAGGCAAAATTTGCCAAAGCTGAGAAGAATGTAAACCAGTTCAAACTTTCAGTTGATCTGATGAAGCAGGAGAGCAAGAAACTTCTTGAGAGGGCAGCTTTTGCTGAAAAGGAAATGAAATTTGGCCAAACTGAGCTCAAGGATGTGGGAAGTCGAATTCAATCTCTATCCAAATCTATTCGCAAGGTTGACGCCCAAGCTGCAGATTTAATGGATGGGCTGCGAGAAATTCCTAGCGGGGAAGCTTTGAAGCTCAGAGCACAGGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

24.49

Weight (kDa)

7.86

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
AasI	GACNNNNNNGTC	1 cut(s)	215
AbsI	CCTCGAGG	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	62
AciI	CCGC	2 cut(s)	119, 630
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	4 cut(s)	401, 512, 549, 621
AcyI	GRCGYC	3 cut(s)	20, 26, 585
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	228, 373
AgsI	TTSAA	5 cut(s)	105, 274, 436, 554, 643
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	9 cut(s)	101, 173, 413, 491, 529, 593, 638, 646, 663
AluI	AGCT	9 cut(s)	101, 173, 413, 491, 529, 593, 638, 646, 663
Alw21I	GWGCWC	2 cut(s)	531, 655
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	132
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	313, 517
ApeKI	GCWGC	9 cut(s)	77, 92, 95, 98, 130, 323, 488, 593, 613
ApoI	RAATTY	4 cut(s)	401, 512, 549, 621
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	231, 344
AsuHPI	GGTGA	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	231, 344
BalI	TGGCCA	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	531
Bbv12I	GWGCWC	2 cut(s)	531, 655
BbvI	GCAGC	9 cut(s)	89, 104, 107, 110, 142, 310, 500, 580, 600
BccI	CCATC	3 cut(s)	109, 260, 602
BceAI	ACGGC	2 cut(s)	73, 200
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	627
BfmI	CTRYAG	3 cut(s)	128, 226, 594
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	9 cut(s)	78, 93, 96, 99, 131, 324, 489, 594, 614
BlsI	GCNGC	9 cut(s)	79, 94, 97, 100, 132, 325, 490, 595, 615
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	231, 344
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	231, 344
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	500, 515
BsaHI	GRCGYC	3 cut(s)	20, 26, 585
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 373
Bse1I	ACTGG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	2 cut(s)	541, 613
BseLI	CCNNNNNNNGG	2 cut(s)	228, 373
BseMII	CTCAG	3 cut(s)	405, 516, 661
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	2 cut(s)	23, 26
BseXI	GCAGC	9 cut(s)	89, 104, 107, 110, 142, 310, 500, 580, 600
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	315, 519
BsiHKAI	GWGCWC	2 cut(s)	531, 655
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	29, 197
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	228, 373
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	315, 519
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	531, 655
Bsp143I	GATC	2 cut(s)	124, 448
BspACI	CCGC	2 cut(s)	119, 630
BspANI	GGCC	2 cut(s)	315, 519
BspCNI	CTCAG	3 cut(s)	406, 517, 660
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	132, 598
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	430
BssMI	GATC	2 cut(s)	124, 448
BssNI	GRCGYC	3 cut(s)	20, 26, 585
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	2 cut(s)	27, 269
BstACI	GRCGYC	3 cut(s)	20, 26, 585
BstAPI	GCANNNNNTGC	2 cut(s)	404, 494
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	3 cut(s)	414, 525, 647
BstF5I	GGATG	2 cut(s)	541, 613
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	127, 451
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	124, 448
BstMWI	GCNNNNNNNGC	9 cut(s)	57, 83, 92, 98, 107, 116, 404, 494, 593
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	3 cut(s)	128, 226, 594
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	9 cut(s)	89, 104, 107, 110, 142, 310, 500, 580, 600
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	315, 519
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	541, 613
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	231, 344
CseI	GACGC	3 cut(s)	28, 34, 593
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	242
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	414, 525, 647
DpnI	GATC	2 cut(s)	126, 450
DpnII	GATC	2 cut(s)	124, 448
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	27, 269
EarI	CTCTTC	2 cut(s)	27, 269
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	231, 344
Eco53kI	GAGCTC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	531
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	1 cut(s)	245
FaiI	YATR	5 cut(s)	66, 204, 206, 243, 369
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	623
Fnu4HI	GCNGC	9 cut(s)	78, 93, 96, 99, 131, 324, 489, 594, 614
FokI	GGATG	2 cut(s)	548, 620
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	9 cut(s)	78, 93, 96, 99, 131, 324, 489, 594, 614
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	9 cut(s)	78, 93, 96, 99, 131, 324, 489, 594, 614
HaeIII	GGCC	2 cut(s)	315, 519
HapII	CCGG	2 cut(s)	29, 197
HgaI	GACGC	3 cut(s)	28, 34, 593
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	3 cut(s)	20, 26, 585
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	29, 197
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	2 cut(s)	427, 583
Hpy188I	TCNGA	4 cut(s)	223, 387, 453, 650
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	2 cut(s)	427, 583
Hpy99I	CGWCG	2 cut(s)	22, 28
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	130, 145, 281, 596
HpyF10VI	GCNNNNNNNGC	9 cut(s)	57, 83, 92, 98, 107, 116, 404, 494, 593
HpyF3I	CTNAG	3 cut(s)	414, 525, 647
Hsp92I	GRCGYC	3 cut(s)	20, 26, 585
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	124, 448
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	26, 42, 210, 214, 327, 354, 443, 446, 641
Lsp1109I	GCAGC	9 cut(s)	89, 104, 107, 110, 142, 310, 500, 580, 600
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	627
MalI	GATC	2 cut(s)	126, 450
MboI	GATC	2 cut(s)	124, 448
MboII	GAAGA	4 cut(s)	44, 241, 286, 430
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	531, 655
MlsI	TGGCCA	1 cut(s)	519
MluCI	AATT	5 cut(s)	309, 401, 512, 549, 621
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	4, 115, 144, 307, 326, 388, 401, 477
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	2 cut(s)	29, 197
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	9 cut(s)	57, 83, 92, 98, 107, 116, 404, 494, 593
NdeII	GATC	2 cut(s)	124, 448
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	392
PaqCI	CACCTGC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	9 cut(s)	79, 94, 97, 100, 132, 325, 490, 595, 615
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	231, 344
PspPPI	RGGWCCY	1 cut(s)	231
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	132, 598
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	9 cut(s)	78, 93, 96, 99, 131, 324, 489, 594, 614
Sau3AI	GATC	2 cut(s)	124, 448
Sau96I	GGNCC	2 cut(s)	231, 344
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	531, 655
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	3 cut(s)	128, 226, 594
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	231, 344
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	3 cut(s)	392, 479, 530
SmoI	CTYRAG	3 cut(s)	392, 479, 530
Sse9I	AATT	5 cut(s)	309, 401, 512, 549, 621
SsiI	CCGC	2 cut(s)	119, 630
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	5 cut(s)	113, 149, 379, 393, 547
TasI	AATT	5 cut(s)	309, 401, 512, 549, 621
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	9 cut(s)	77, 92, 95, 98, 130, 323, 488, 593, 613
TspDTI	ATGAA	3 cut(s)	319, 470, 524
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	231, 344
XapI	RAATTY	4 cut(s)	401, 512, 549, 621
XceI	RCATGY	1 cut(s)	245
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.