RLG00000037078

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013527
Physical Location & Seq
Forward (+)
88098326 .. 88099996
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037078

Sequence Viewer

Length: 759 bp
ATGGCGGAGGAGGAGCCGACGCCGACGCCGACGCCGTCACCAGAAGAGAAGCAGGTGATAGGCGATGACGGCGCGTATAAGGGAGTGGCAGCAGAAGCAGAAGCAGCAGCAGCTTCAATGGCTTCGATGGCGGAGGATCTGCAGCGTACGGTGATGCAATCGAGGGACTCTGCCATTCGTTCAGCTCGCACTCTCCAAGATAATGTGCCGGAATATATGGACAAAGCCGCCTCCGACTACAGGACCTACGAACATGCTTTCTTCCACAAAATCAAAGATGGATTGAAGAGTGCAACAGAGAACCCAGCCTCAACCATTGGAATTGGCCTCACTGCTGCTTTCATTCTTTTGCCAGGACCAAGAAGGTTCTTATTTCGCCATACATTGGGTCGATTTCAGAGCCTCGAGGCAAAATTTGCCAAAGCTGAGAAGAATGTAAACCAGTTCAAACTTTCGGTTGATCTGATGAAGCAGGAGAGCAAGAAACTTCTTCAGAGGGCAGCTTTTGCTGAAAAGGAAATGAAATTTGGCCAAACTGAGCTCAAGGATGTGGGAAGTCGAATTCAATCTCTATCCAAATCTATTCGCAAGGTTGACGCCCAAGCTGCAGATTTAATGGATGGGCTGCGAGAAATTCCTAGCGGGGAAGCTTTGAAGCTCAGAGCACAGGTTGCTGCAATGACATCACAATTGAAAACGCAGAAGTCTGTGATGCACAAACGCATAATGAAGATTTCGGAGTTAGGAGTTCCAGTGTGA

Protein Analysis

253

Amino Acids

27.78

Weight (kDa)

9.24

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26410
fragaria_vesca FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica MD11G1001100.v1.1
prunus_persica Prupe.6G001300_v2.0.a1
pyrus_communis pycom11g00130
rosa_chinensis RchiOBHm_Chr5g0084061
rosa_laevigata RLG00000037078
rosa_multiflora Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii Rroxscaffold_1G00000600
rosa_rugosa Rorug05G0488800
rosa_samantha Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana Rw5G050350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AbsI CCTCGAGG 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 385
AccII CGCG 1 cut(s) 74
AciI CCGC 4 cut(s) 5, 131, 228, 642
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 4 cut(s) 413, 524, 561, 633
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 4 cut(s) 20, 26, 32, 597
AfaI GTAC 1 cut(s) 148
AfiI CCNNNNNNNGG 2 cut(s) 240, 385
AgsI TTSAA 6 cut(s) 117, 286, 448, 566, 655, 694
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 8 cut(s) 113, 185, 425, 503, 541, 605, 650, 658
AluI AGCT 8 cut(s) 113, 185, 425, 503, 541, 605, 650, 658
Alw21I GWGCWC 2 cut(s) 543, 667
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 2 cut(s) 325, 529
ApoI RAATTY 4 cut(s) 413, 524, 561, 633
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 243, 356
AsuHPI GGTGA 3 cut(s) 30, 67, 163
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 2 cut(s) 243, 356
BalI TGGCCA 1 cut(s) 531
BanII GRGCYC 1 cut(s) 543
Bbv12I GWGCWC 2 cut(s) 543, 667
BccI CCATC 3 cut(s) 121, 272, 614
BceAI ACGGC 2 cut(s) 19, 85
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 639
BfmI CTRYAG 3 cut(s) 140, 238, 606
BfuAI ACCTGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 2 cut(s) 243, 356
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 2 cut(s) 243, 356
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 144, 702
BpuEI CTTGAG 1 cut(s) 527
BsaHI GRCGYC 4 cut(s) 20, 26, 32, 597
BsaXI ACNNNNNCTCC 1 cut(s) 738
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 385
Bse1I ACTGG 2 cut(s) 442, 752
Bse3DI GCAATG 1 cut(s) 684
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 2 cut(s) 553, 625
BseLI CCNNNNNNNGG 2 cut(s) 240, 385
BseMI GCAATG 1 cut(s) 684
BseMII CTCAG 3 cut(s) 417, 528, 673
BseNI ACTGG 2 cut(s) 442, 752
BseRI GAGGAG 2 cut(s) 23, 26
BseYI CCCAGC 1 cut(s) 304
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 327, 531
BsiHKAI GWGCWC 2 cut(s) 543, 667
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 209
BsiWI CGTACG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 240, 385
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 327, 531
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 543, 667
Bsp143I GATC 2 cut(s) 136, 460
BspACI CCGC 4 cut(s) 5, 131, 228, 642
BspANI GGCC 2 cut(s) 327, 531
BspCNI CTCAG 3 cut(s) 418, 529, 672
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 2 cut(s) 144, 610
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 684
BsrI ACTGG 2 cut(s) 442, 752
BssMI GATC 2 cut(s) 136, 460
BssNI GRCGYC 4 cut(s) 20, 26, 32, 597
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 39, 281
BstACI GRCGYC 4 cut(s) 20, 26, 32, 597
BstAPI GCANNNNNTGC 3 cut(s) 416, 506, 671
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 3 cut(s) 426, 537, 659
BstF5I GGATG 2 cut(s) 553, 625
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 139, 463
BstMBI GATC 2 cut(s) 136, 460
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 3 cut(s) 140, 238, 606
BstUI CGCG 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 2 cut(s) 327, 531
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 2 cut(s) 553, 625
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 2 cut(s) 330, 759
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 243, 356
CseI GACGC 4 cut(s) 28, 34, 40, 605
Csp6I GTAC 1 cut(s) 147
CviAII CATG 1 cut(s) 254
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 3 cut(s) 426, 537, 659
DpnI GATC 2 cut(s) 138, 462
DpnII GATC 2 cut(s) 136, 460
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 39, 281
EarI CTCTTC 2 cut(s) 39, 281
EciI GGCGGA 2 cut(s) 20, 146
Ecl136II GAGCTC 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 243, 356
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 404
EcoICRI GAGCTC 1 cut(s) 541
EcoO109I RGGNCCY 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 543
FaeI CATG 1 cut(s) 257
FaiI YATR 6 cut(s) 78, 216, 218, 255, 381, 725
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 253
FauI CCCGC 1 cut(s) 635
FokI GGATG 2 cut(s) 560, 632
FriOI GRGCYC 1 cut(s) 543
FspBI CTAG 1 cut(s) 639
GlaI GCGC 1 cut(s) 73
GsaI CCCAGC 1 cut(s) 308
HaeIII GGCC 2 cut(s) 327, 531
HapII CCGG 1 cut(s) 209
HgaI GACGC 4 cut(s) 28, 34, 40, 605
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 4 cut(s) 20, 26, 32, 597
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 30, 67, 163
Hpy166II GTNNAC 2 cut(s) 439, 595
Hpy188I TCNGA 6 cut(s) 235, 399, 465, 495, 662, 739
Hpy8I GTNNAC 2 cut(s) 439, 595
Hpy99I CGWCG 3 cut(s) 22, 28, 34
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 142, 157, 293, 608, 677, 715
HpyF3I CTNAG 3 cut(s) 426, 537, 659
Hsp92I GRCGYC 4 cut(s) 20, 26, 32, 597
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 136, 460
LmnI GCTCC 1 cut(s) 13
LweI GCATC 2 cut(s) 144, 702
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 36
MalI GATC 2 cut(s) 138, 462
MboI GATC 2 cut(s) 136, 460
MboII GAAGA 6 cut(s) 56, 253, 298, 442, 482, 742
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 543, 667
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 6 cut(s) 321, 413, 524, 561, 633, 689
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 9 cut(s) 4, 127, 156, 241, 319, 338, 400, 413, 489
Mox20I TGGCCA 1 cut(s) 531
MscI TGGCCA 1 cut(s) 531
MseI TTAA 1 cut(s) 614
Msp20I TGGCCA 1 cut(s) 531
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 689
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 74
NdeII GATC 2 cut(s) 136, 460
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 36
NspI RCATGY 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 404
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 32
Pfl23II CGTACG 1 cut(s) 146
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 385
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PpuMI RGGWCCY 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 1 cut(s) 352
PspLI CGTACG 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 243, 356
PspPPI RGGWCCY 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 404
PstI CTGCAG 2 cut(s) 144, 610
PsuI RGATCY 1 cut(s) 136
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 614
Sau3AI GATC 2 cut(s) 136, 460
Sau96I GGNCC 2 cut(s) 243, 356
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 543, 667
SfaNI GCATC 2 cut(s) 144, 702
SfcI CTRYAG 3 cut(s) 140, 238, 606
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 2 cut(s) 243, 356
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 404, 542
SmoI CTYRAG 2 cut(s) 404, 542
Sse9I AATT 6 cut(s) 321, 413, 524, 561, 633, 689
SsiI CCGC 4 cut(s) 5, 131, 228, 642
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 5 cut(s) 125, 161, 391, 405, 559
TasI AATT 6 cut(s) 321, 413, 524, 561, 633, 689
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 2 cut(s) 337, 759
TseFI GTSAC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 36
TspDTI ATGAA 4 cut(s) 331, 482, 536, 743
TspRI CASTG 2 cut(s) 337, 759
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 2 cut(s) 243, 356
XapI RAATTY 4 cut(s) 413, 524, 561, 633
XceI RCATGY 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 404
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.