RchiOBHm_Chr5g0084061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013527
Physical Location & Seq
Forward (+)
89682430 .. 89684545
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35816

Sequence Viewer

Length: 747 bp
ATGGCGGAGGAGGAGCCGACGCCGTCACCGGAAGAGAAGCAGGTGTTAGGCGATGACGGCACGTATAAGGGAGTGGCAGCAGAAGCAGAAGCAGCAGCAGCTTCAATGGCTTCGATGGCGGAGGATCTGCAGCGTACGGTGATGCAATCGAGGGACTCTGCCATTCGTTCAGCTCGCACTCTCCAAGATAATGTGCCGGAATATATGGACAAAGCCGCCTCCGACTACAGGACCTACGAACATGCTTTCTTCCACAAAATCAAAGTTGGATTGAAGAGTGCAACGGAGAACCCAGCCTCAACCATTGGAATTGGCCTCACTGCTGCTTTCATTCTTTTGCCAGGACCAAGAAGGTTCTTATTTCGCCATACATTGGGTCGATTTCAGAGCCTCGAGGCAAAATTTGCCAAAGCTGAGAAGAATGTAAACCAGTTCAAACTTTCAGTTGATCTGATGAAGCAGGAGAGCAAGAAACTTCTTGAGAGGGCAGCTTTTGCTGAAAAGGAAATGAAATTTGGCCAAACTGAGCTCAAGGATGTGGGAAGTCGAATTCAATCTCTATCCAAATCTATTCGCAAGGTTGACGCCCAAGCTGCAGATTTAATGGATGGGCTGCGAGAAATTCCTAGCGGGGAAGCTTTGAAGCTCAGAGCACAGGTTGCTGCAATGACATCACAATTGAAAACGCAGAAGACTGTGATGGACAAACGCATAATGAAGATTTCGGAGTTAGGAGTTCCAGTGTGA

Protein Analysis

248

Amino Acids

27.39

Weight (kDa)

9.1

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26410
fragaria_vesca FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica MD11G1001100.v1.1
prunus_persica Prupe.6G001300_v2.0.a1
pyrus_communis pycom11g00130
rosa_chinensis RchiOBHm_Chr5g0084061
rosa_laevigata RLG00000037078
rosa_multiflora Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii Rroxscaffold_1G00000600
rosa_rugosa Rorug05G0488800
rosa_samantha Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana Rw5G050350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
AbsI CCTCGAGG 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 31
AccB7I CCANNNNNTGG 1 cut(s) 373
AciI CCGC 4 cut(s) 5, 119, 216, 630
AclWI GGATC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 4 cut(s) 401, 512, 549, 621
AcyI GRCGYC 2 cut(s) 20, 585
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 228, 373
AgsI TTSAA 6 cut(s) 105, 274, 436, 554, 643, 682
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 8 cut(s) 101, 173, 413, 491, 529, 593, 638, 646
AluI AGCT 8 cut(s) 101, 173, 413, 491, 529, 593, 638, 646
Alw21I GWGCWC 2 cut(s) 531, 655
AlwI GGATC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 2 cut(s) 313, 517
ApoI RAATTY 4 cut(s) 401, 512, 549, 621
AspS9I GGNCC 2 cut(s) 231, 344
AsuHPI GGTGA 2 cut(s) 18, 151
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 231, 344
BalI TGGCCA 1 cut(s) 519
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 2 cut(s) 531, 655
BccI CCATC 3 cut(s) 109, 602, 694
BceAI ACGGC 2 cut(s) 7, 73
BciT130I CCWGG 1 cut(s) 342
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 3 cut(s) 128, 226, 594
BfuAI ACCTGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 231, 344
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 231, 344
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 698
BpuEI CTTGAG 2 cut(s) 500, 515
BsaAI YACGTR 1 cut(s) 63
BsaHI GRCGYC 2 cut(s) 20, 585
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 1 cut(s) 726
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 373
Bse1I ACTGG 2 cut(s) 430, 740
Bse3DI GCAATG 1 cut(s) 672
BseBI CCWGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 541, 613
BseLI CCNNNNNNNGG 2 cut(s) 228, 373
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 3 cut(s) 405, 516, 661
BseNI ACTGG 2 cut(s) 430, 740
BseRI GAGGAG 2 cut(s) 23, 26
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 315, 519
BsiHKAI GWGCWC 2 cut(s) 531, 655
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 29, 197
BsiWI CGTACG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 228, 373
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 315, 519
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 531, 655
Bsp143I GATC 2 cut(s) 124, 448
BspACI CCGC 4 cut(s) 5, 119, 216, 630
BspANI GGCC 2 cut(s) 315, 519
BspCNI CTCAG 3 cut(s) 406, 517, 660
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 2 cut(s) 132, 598
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 672
BsrI ACTGG 2 cut(s) 430, 740
BssMI GATC 2 cut(s) 124, 448
BssNI GRCGYC 2 cut(s) 20, 585
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 139, 697
Bst6I CTCTTC 2 cut(s) 27, 269
BstACI GRCGYC 2 cut(s) 20, 585
BstAPI GCANNNNNTGC 3 cut(s) 404, 494, 659
BstBAI YACGTR 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 3 cut(s) 414, 525, 647
BstF5I GGATG 2 cut(s) 541, 613
BstKTI GATC 2 cut(s) 127, 451
BstMBI GATC 2 cut(s) 124, 448
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 3 cut(s) 128, 226, 594
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 315, 519
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 541, 613
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 747
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 231, 344
CseI GACGC 2 cut(s) 28, 593
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 242
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 414, 525, 647
DpnI GATC 2 cut(s) 126, 450
DpnII GATC 2 cut(s) 124, 448
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 27, 269
EarI CTCTTC 2 cut(s) 27, 269
EciI GGCGGA 2 cut(s) 20, 134
Ecl136II GAGCTC 1 cut(s) 529
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 231, 344
Eco53kI GAGCTC 1 cut(s) 529
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 529
EcoO109I RGGNCCY 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 531
FaeI CATG 1 cut(s) 245
FaiI YATR 6 cut(s) 66, 204, 206, 243, 369, 713
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 241
FauI CCCGC 1 cut(s) 623
FokI GGATG 2 cut(s) 548, 620
FriOI GRGCYC 1 cut(s) 531
FspBI CTAG 1 cut(s) 627
GsaI CCCAGC 1 cut(s) 296
HaeIII GGCC 2 cut(s) 315, 519
HapII CCGG 2 cut(s) 29, 197
HgaI GACGC 2 cut(s) 28, 593
Hin1I GRCGYC 2 cut(s) 20, 585
Hin1II CATG 1 cut(s) 245
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 1 cut(s) 155
HpaII CCGG 2 cut(s) 29, 197
HphI GGTGA 2 cut(s) 18, 151
Hpy166II GTNNAC 2 cut(s) 427, 583
Hpy188I TCNGA 5 cut(s) 223, 387, 453, 650, 727
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 2 cut(s) 427, 583
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 2 cut(s) 139, 697
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 5 cut(s) 130, 145, 281, 596, 665
HpyF3I CTNAG 3 cut(s) 414, 525, 647
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 20, 585
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 124, 448
LmnI GCTCC 1 cut(s) 13
LweI GCATC 1 cut(s) 132
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 126, 450
MboI GATC 2 cut(s) 124, 448
MboII GAAGA 6 cut(s) 44, 241, 286, 430, 703, 730
MfeI CAATTG 1 cut(s) 677
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 2 cut(s) 531, 655
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 6 cut(s) 309, 401, 512, 549, 621, 677
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 246, 247
MnlI CCTC 9 cut(s) 4, 115, 144, 229, 307, 326, 388, 401, 477
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 519
MspI CCGG 2 cut(s) 29, 197
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 1 cut(s) 677
MvaI CCWGG 1 cut(s) 342
NdeII GATC 2 cut(s) 124, 448
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 24
NspI RCATGY 1 cut(s) 245
PaeR7I CTCGAG 1 cut(s) 392
PaqCI CACCTGC 1 cut(s) 31
Pfl23II CGTACG 1 cut(s) 134
PflFI GACNNNGTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 373
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 340
PspLI CGTACG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 231, 344
PspPPI RGGWCCY 1 cut(s) 231
PspXI VCTCGAGB 1 cut(s) 392
PstI CTGCAG 2 cut(s) 132, 598
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 22
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 602
Sau3AI GATC 2 cut(s) 124, 448
Sau96I GGNCC 2 cut(s) 231, 344
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 531, 655
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 3 cut(s) 128, 226, 594
Sfr274I CTCGAG 1 cut(s) 392
SinI GGWCC 2 cut(s) 231, 344
SlaI CTCGAG 1 cut(s) 392
SmlI CTYRAG 3 cut(s) 392, 479, 530
SmoI CTYRAG 3 cut(s) 392, 479, 530
Sse9I AATT 6 cut(s) 309, 401, 512, 549, 621, 677
SsiI CCGC 4 cut(s) 5, 119, 216, 630
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 139, 697
TaiI ACGT 1 cut(s) 65
TaqI TCGA 5 cut(s) 113, 149, 379, 393, 547
TasI AATT 6 cut(s) 309, 401, 512, 549, 621, 677
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 2 cut(s) 325, 747
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 4 cut(s) 319, 470, 524, 731
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 2 cut(s) 325, 747
Tth111I GACNNNGTC 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 231, 344
XapI RAATTY 4 cut(s) 401, 512, 549, 621
XceI RCATGY 1 cut(s) 245
XhoI CTCGAG 1 cut(s) 392
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.