Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Reverse (-)

1044680 .. 1046654

Gene Structure 1975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGGAGGAGGAGCCGACGCCGTCGCCGTCACCGGAAGAGAAGCAGGTGACAGGCGATGACGGCACGTATAAGGGAGTGGCAGCAGAAGCAGAAGCAGCAGCAGCTTCAATGGCTTCGATGGCGGAGGATCTGCAGCGTACGGTGTTGCAATCGAGGGACTCTGCCATTCGTTCAGCTCGCACTCTCCAAGATAATGTGCCGGAATATATGGACAAAGCCGCCTCCGACTACAGGACCTACGAACAGGCTTTCTTCCACAAAATCAAAGATGGATTGAAGAGTGCAACAGAGAACCCAGCCTCAACCATTGGAATTGGCCTCACTGCTGCCTTCATTCTTTTGCCAGGACCAAGAAGGTTCTTATTTCGCCATACATTGGGTCGATTTCAGAGCCTCGAGGCAAAATTTGCCAAAGCTGAGAAGAATGTAAACCAGTTCAAACTTTCAGTTGATCTGATGAAGCAGGAGAGCAAGAAACTTCTTCAGAGGGCAGCTTTTGCTGAAAAGGAAATGAAATTTGGCCAAACTGAGCTCAAGGATGTGGGAAGTCGAATTCAATCTCTATCCAAATCTATTCGCAAGGTTGACGCCCAAGCTGCAGATTTAATGGATGGGCTGCGAGAAATTCCTAGCGGGGAAGCTTTGAAGCTCAGAGCACAGGTTGCTGCAATGACATCACAATTGAAAACACAGAAGTCTGTGATGGACAAACGCATAATGAAGATTTCGGAGTTAGGAGTTCCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.53

Weight (kDa)

9.1

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	37
AbsI	CCTCGAGG	1 cut(s)	398
Acc36I	ACCTGC	1 cut(s)	37
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	4 cut(s)	5, 125, 222, 636
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	4 cut(s)	407, 518, 555, 627
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	20, 591
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	234, 379
AgsI	TTSAA	6 cut(s)	111, 280, 442, 560, 649, 688
AjnI	CCWGG	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	8 cut(s)	107, 179, 419, 497, 535, 599, 644, 652
AluI	AGCT	8 cut(s)	107, 179, 419, 497, 535, 599, 644, 652
Alw21I	GWGCWC	2 cut(s)	537, 661
AlwI	GGATC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	319, 523
ApoI	RAATTY	4 cut(s)	407, 518, 555, 627
AspS9I	GGNCC	2 cut(s)	237, 350
AsuHPI	GGTGA	2 cut(s)	24, 61
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	237, 350
BalI	TGGCCA	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	537, 661
BccI	CCATC	4 cut(s)	115, 266, 608, 700
BceAI	ACGGC	3 cut(s)	7, 13, 79
BciT130I	CCWGG	1 cut(s)	348
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	3 cut(s)	134, 232, 600
BfuAI	ACCTGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	237, 350
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	237, 350
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	20, 591
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 379
Bse1I	ACTGG	2 cut(s)	436, 746
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	547, 619
BseLI	CCNNNNNNNGG	2 cut(s)	234, 379
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	3 cut(s)	411, 522, 667
BseNI	ACTGG	2 cut(s)	436, 746
BseRI	GAGGAG	2 cut(s)	23, 26
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	2 cut(s)	321, 525
BsiHKAI	GWGCWC	2 cut(s)	537, 661
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	35, 203
BsiWI	CGTACG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	234, 379
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	321, 525
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	537, 661
Bsp143I	GATC	2 cut(s)	130, 454
BspACI	CCGC	4 cut(s)	5, 125, 222, 636
BspANI	GGCC	2 cut(s)	321, 525
BspCNI	CTCAG	3 cut(s)	412, 523, 666
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	138, 604
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	2 cut(s)	436, 746
BssMI	GATC	2 cut(s)	130, 454
BssNI	GRCGYC	2 cut(s)	20, 591
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	33, 275
BstACI	GRCGYC	2 cut(s)	20, 591
BstAPI	GCANNNNNTGC	3 cut(s)	410, 500, 665
BstBAI	YACGTR	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	3 cut(s)	420, 531, 653
BstF5I	GGATG	2 cut(s)	547, 619
BstKTI	GATC	2 cut(s)	133, 457
BstMBI	GATC	2 cut(s)	130, 454
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	3 cut(s)	134, 232, 600
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	321, 525
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	547, 619
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 753
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	237, 350
CseI	GACGC	2 cut(s)	28, 599
Csp6I	GTAC	1 cut(s)	141
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	3 cut(s)	420, 531, 653
DpnI	GATC	2 cut(s)	132, 456
DpnII	GATC	2 cut(s)	130, 454
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	33, 275
EarI	CTCTTC	2 cut(s)	33, 275
EciI	GGCGGA	2 cut(s)	20, 140
Ecl136II	GAGCTC	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	237, 350
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	555
EcoRII	CCWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	537
FaiI	YATR	5 cut(s)	72, 210, 212, 375, 719
FaqI	GGGAC	1 cut(s)	173
FauI	CCCGC	1 cut(s)	629
FokI	GGATG	2 cut(s)	554, 626
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	1 cut(s)	633
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	321, 525
HapII	CCGG	2 cut(s)	35, 203
HgaI	GACGC	2 cut(s)	28, 599
Hin1I	GRCGYC	2 cut(s)	20, 591
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	35, 203
HphI	GGTGA	2 cut(s)	24, 61
Hpy166II	GTNNAC	2 cut(s)	433, 589
Hpy188I	TCNGA	6 cut(s)	229, 393, 459, 489, 656, 733
Hpy8I	GTNNAC	2 cut(s)	433, 589
Hpy99I	CGWCG	2 cut(s)	22, 28
HpyAV	CCTTC	2 cut(s)	343, 351
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	136, 151, 287, 602, 671
HpyF3I	CTNAG	3 cut(s)	420, 531, 653
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	2 cut(s)	20, 591
Kzo9I	GATC	2 cut(s)	130, 454
LmnI	GCTCC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	30, 49
MalI	GATC	2 cut(s)	132, 456
MboI	GATC	2 cut(s)	130, 454
MboII	GAAGA	6 cut(s)	50, 247, 292, 436, 476, 736
MfeI	CAATTG	1 cut(s)	683
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	537, 661
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	6 cut(s)	315, 407, 518, 555, 627, 683
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	4, 121, 150, 235, 313, 332, 394, 407, 483
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	525
MspI	CCGG	2 cut(s)	35, 203
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	348
NdeII	GATC	2 cut(s)	130, 454
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	2 cut(s)	30, 49
PaeR7I	CTCGAG	1 cut(s)	398
PaqCI	CACCTGC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
Pfl23II	CGTACG	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	379
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	346
PspLI	CGTACG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	237, 350
PspPPI	RGGWCCY	1 cut(s)	237
PspXI	VCTCGAGB	1 cut(s)	398
PstI	CTGCAG	2 cut(s)	138, 604
PsuI	RGATCY	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	608
Sau3AI	GATC	2 cut(s)	130, 454
Sau96I	GGNCC	2 cut(s)	237, 350
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	537, 661
SfcI	CTRYAG	3 cut(s)	134, 232, 600
Sfr274I	CTCGAG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	237, 350
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	398, 536
SmoI	CTYRAG	2 cut(s)	398, 536
Sse9I	AATT	6 cut(s)	315, 407, 518, 555, 627, 683
SsiI	CCGC	4 cut(s)	5, 125, 222, 636
SspMI	CTAG	1 cut(s)	633
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	5 cut(s)	119, 155, 385, 399, 553
TasI	AATT	6 cut(s)	315, 407, 518, 555, 627, 683
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	2 cut(s)	331, 753
TseFI	GTSAC	2 cut(s)	30, 49
Tsp45I	GTSAC	2 cut(s)	30, 49
TspDTI	ATGAA	4 cut(s)	325, 476, 530, 737
TspRI	CASTG	2 cut(s)	331, 753
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	237, 350
XapI	RAATTY	4 cut(s)	407, 518, 555, 627
XhoI	CTCGAG	1 cut(s)	398
XspI	CTAG	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.