Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013527

Physical Location & Seq

Genomic Coordinates Forward (+)

38166672 .. 38168758

Gene Structure 2087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGAGGAGGAGCCGACGACGCCGTCACCGGAGATTAAGAAGAACGAAGGCGATGAAGGGAAGTATAAGGGAGTGGCAGCAGAAGCAGAAGCAGCGGCGGCTTCTATGGCTTTGATGGCGGAGGATCTGCAGCGTTCGGTGATGCAATCCAGGGACTCCGCCATGCGTTCTGCTCGGATTCTCCAACATAATATGCCGGGATACATCGACAAAGCCGCCTCCAAATACAGGACCTACGAACATGCTTTCTTCCACAAAATCAAAGAAGGAGTGAAGAGAGCAGCCGAAAACCCAGCCTCCACCATTGGAATTGGCCTTACTGCCGCCTTCATTTTTTTACGAGGACCAAGAAGGTTCTTGTTTCGCAATACATTGGGTCGATTTCAGAGCCTGGAGGCAAAATATGCCAAAGCTGAGAAGAATGTAAACCAGCTCAACCTTTCTGTTGATCTGATGAAGCAGGAGAGCAAGAAACTTCTTGAGAGAGCAGGTTATGCTGAAAAACATATGAAAGTTGGCCAAACTGATCTCATGGATGTGGGAAGTCGGATTCAATCTCTGTCCAAATCTATGCGCAAGGTTGACTCCCAAGCTGCAGATTTGATGGATGGGTTGCGAGAAATTCCTAGCGGGGAAGCTTTGAAGCTCAGATCACAGGTTGCTGCAATGACATCAGAACTGAAAACGCAGAAGGCTGTGATGGACAAACACATAATGAAGATTTCTGAATTAGGACTGCCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001678 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009743 GO:0009746 GO:0009749 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0019725 GO:0023051 GO:0033500 GO:0034284 GO:0042221 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:1901700 GO:1901701 GO:1902659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.62

Weight (kDa)

9.48

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26410
fragaria_vesca	FvH4_3g45950 FvH4_3g45950 FvH4_3g45950
malus_domestica	MD11G1001100.v1.1
prunus_persica	Prupe.6G001300_v2.0.a1
pyrus_communis	pycom11g00130
rosa_chinensis	RchiOBHm_Chr5g0084061
rosa_laevigata	RLG00000037078
rosa_multiflora	Rmu_co8001390.1_g000001 Rmu_ssc0000372.1_g000088
rosa_roxburghii	Rroxscaffold_1G00000600
rosa_rugosa	Rorug05G0488800
rosa_samantha	Rh5AG541400 Rh5BG566700 Rh5CG588700 Rh5DG575100
rosa_wichuraiana	Rw5G050350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
Acc16I	TGCGCA	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	482
AciI	CCGC	8 cut(s)	5, 98, 101, 122, 162, 219, 327, 633
AclWI	GGATC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	1 cut(s)	624
AcyI	GRCGYC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	557, 646
AjnI	CCWGG	2 cut(s)	152, 393
AluBI	AGCT	5 cut(s)	416, 436, 596, 641, 649
AluI	AGCT	5 cut(s)	416, 436, 596, 641, 649
AlwI	GGATC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	2 cut(s)	316, 520
ApeKI	GCWGC	6 cut(s)	80, 95, 133, 284, 596, 665
ApoI	RAATTY	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	2 cut(s)	234, 347
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	21, 154
AvaII	GGWCC	2 cut(s)	234, 347
BalI	TGGCCA	1 cut(s)	522
BbvI	GCAGC	6 cut(s)	92, 107, 145, 296, 583, 652
BccI	CCATC	4 cut(s)	112, 601, 605, 697
BceAI	ACGGC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	154, 395
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	131, 597
BfuAI	ACCTGC	1 cut(s)	482
BfuI	GTATCC	1 cut(s)	197
Bme1390I	CCNGG	3 cut(s)	154, 201, 395
Bme18I	GGWCC	2 cut(s)	234, 347
BmgT120I	GGNCC	2 cut(s)	234, 347
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	3 cut(s)	154, 201, 395
BmsI	GCATC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	675
BseBI	CCWGG	2 cut(s)	154, 395
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	544, 616
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	408, 664
BseNI	ACTGG	1 cut(s)	743
BseRI	GAGGAG	2 cut(s)	23, 26
BseXI	GCAGC	6 cut(s)	92, 107, 145, 296, 583, 652
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	318, 522
BsiSI	CCGG	2 cut(s)	32, 200
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	318, 522
Bsp143I	GATC	4 cut(s)	127, 451, 529, 653
BspACI	CCGC	8 cut(s)	5, 98, 101, 122, 162, 219, 327, 633
BspANI	GGCC	2 cut(s)	318, 522
BspCNI	CTCAG	2 cut(s)	409, 663
BspLI	GGNNCC	1 cut(s)	15
BspMAI	CTGCAG	2 cut(s)	135, 601
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	743
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	4 cut(s)	127, 451, 529, 653
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	154, 395
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	2 cut(s)	407, 497
BstDEI	CTNAG	2 cut(s)	417, 650
BstF5I	GGATG	2 cut(s)	544, 616
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	4 cut(s)	130, 454, 532, 656
BstMBI	GATC	4 cut(s)	127, 451, 529, 653
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 86, 95, 101, 110, 119, 407, 497
BstNI	CCWGG	2 cut(s)	154, 395
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	152, 199, 393
BstSFI	CTRYAG	2 cut(s)	131, 597
BstV1I	GCAGC	6 cut(s)	92, 107, 145, 296, 583, 652
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	318, 522
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	544, 616
BtsIMutI	CAGTG	1 cut(s)	750
BveI	ACCTGC	1 cut(s)	482
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	2 cut(s)	234, 347
CseI	GACGC	1 cut(s)	31
CviAII	CATG	3 cut(s)	166, 245, 535
DdeI	CTNAG	2 cut(s)	417, 650
DpnI	GATC	4 cut(s)	129, 453, 531, 655
DpnII	GATC	4 cut(s)	127, 451, 529, 653
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	3 cut(s)	20, 137, 151
Eco47I	GGWCC	2 cut(s)	234, 347
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	152, 393
FaeI	CATG	3 cut(s)	169, 248, 538
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	165, 244, 534
FauI	CCCGC	1 cut(s)	626
FauNDI	CATATG	1 cut(s)	510
FokI	GGATG	2 cut(s)	551, 623
FspBI	CTAG	1 cut(s)	630
FspI	TGCGCA	1 cut(s)	578
GlaI	GCGC	1 cut(s)	578
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	2 cut(s)	318, 522
HapII	CCGG	2 cut(s)	32, 200
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	579
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	169, 248, 538
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	4 cut(s)	158, 181, 553, 587
HpaII	CCGG	2 cut(s)	32, 200
HphI	GGTGA	2 cut(s)	21, 154
Hpy166II	GTNNAC	2 cut(s)	430, 586
Hpy188I	TCNGA	7 cut(s)	180, 390, 456, 552, 653, 679, 730
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	2 cut(s)	430, 586
Hpy99I	CGWCG	2 cut(s)	22, 25
HpyAV	CCTTC	6 cut(s)	44, 53, 263, 340, 348, 688
HpyCH4V	TGCA	4 cut(s)	133, 148, 599, 668
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 86, 95, 101, 110, 119, 407, 497
HpyF3I	CTNAG	2 cut(s)	417, 650
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	169, 248, 538
HspAI	GCGC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	127, 451, 529, 653
LmnI	GCTCC	1 cut(s)	13
Lsp1109I	GCAGC	6 cut(s)	92, 107, 145, 296, 583, 652
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	4 cut(s)	129, 453, 531, 655
MboI	GATC	4 cut(s)	127, 451, 529, 653
MboII	GAAGA	5 cut(s)	55, 244, 289, 433, 733
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	522
MluCI	AATT	3 cut(s)	312, 624, 731
MluNI	TGGCCA	1 cut(s)	522
MlyI	GAGTC	2 cut(s)	152, 581
MmeI	TCCRAC	2 cut(s)	211, 530
MnlI	CCTC	6 cut(s)	4, 118, 232, 310, 338, 391
Mox20I	TGGCCA	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	522
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	32, 200
MspR9I	CCNGG	3 cut(s)	154, 201, 395
MvaI	CCWGG	2 cut(s)	154, 395
MwoI	GCNNNNNNNGC	8 cut(s)	22, 86, 95, 101, 110, 119, 407, 497
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	4 cut(s)	127, 451, 529, 653
NlaIII	CATG	3 cut(s)	169, 248, 538
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	27
NsbI	TGCGCA	1 cut(s)	578
NspI	RCATGY	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	181, 553
PflFI	GACNNNGTC	1 cut(s)	25
PleI	GAGTC	2 cut(s)	152, 581
PpsI	GAGTC	2 cut(s)	152, 581
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	152, 393
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	2 cut(s)	152, 393
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	234, 347
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	2 cut(s)	135, 601
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	4 cut(s)	127, 451, 529, 653
Sau96I	GGNCC	2 cut(s)	234, 347
SchI	GAGTC	2 cut(s)	152, 581
ScrFI	CCNGG	3 cut(s)	154, 201, 395
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	2 cut(s)	131, 597
SinI	GGWCC	2 cut(s)	234, 347
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	312, 624, 731
SsiI	CCGC	8 cut(s)	5, 98, 101, 122, 162, 219, 327, 633
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	152, 199, 393
TaqI	TCGA	2 cut(s)	210, 382
TasI	AATT	3 cut(s)	312, 624, 731
TauI	GCSGC	4 cut(s)	101, 104, 221, 329
TfiI	GAWTC	2 cut(s)	181, 553
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	6 cut(s)	80, 95, 133, 284, 596, 665
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	5 cut(s)	72, 322, 473, 527, 734
TspRI	CASTG	1 cut(s)	750
Tth111I	GACNNNGTC	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	234, 347
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	1 cut(s)	248
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.