Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Reverse (-)

13367625 .. 13368629

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26466.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGCTGATATTATTATTCTTCTTTCTGATGGCACTGTTGGTATCTCTCTCCTCTTCAAGTTCCATATCGGATGGTGTGTTTGAATCACAAACCTCGGTTAGTGGAAGGAACCTTCGTCATGCCAAGAAAAAATGTGAAGTGAACTTTGAGTATATGGACTACAAGGTCTTGACAAAGAGGTGCAAAGGTCCAGCGTTTCCAGCCAAAGAATGTTGCTCTGCTTTTAAAGAATTTGCATGTCCTTACGTGAGTCAGATCAACGACATGAATAGTGATTGTGCACAGACAATGTTCAGCTACATGAATATTTATGGAAACTACCCTACTGGCCTTTTCGCTAACGAGTGCAGAGAAAGGAAAGATGGGCTTGTTTGCCCTTTACCACCTCTCTATTCACATAACCTAAACGCCTCAACTGCTGATTCGACTCCTCGTTTTATCTCGCTGTTGATCTCTGCTGCAACCGCTGTTTTTGCTTTGTTAGTGTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.34

Weight (kDa)

7.51

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	48 - 124	6e-36	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AciI	CCGC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	60, 86
AluBI	AGCT	2 cut(s)	7, 300
AluI	AGCT	2 cut(s)	7, 300
Alw21I	GWGCWC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	25, 68, 359
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	43, 423
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	370
BshFI	GGCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	258, 453
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	258, 453
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	261, 456
BstMBI	GATC	2 cut(s)	258, 453
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 419, 467, 476
BstNSI	RCATGY	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	4 cut(s)	122, 240, 268, 304
CviJI	RGCY	5 cut(s)	7, 206, 300, 333, 370
CviKI_1	RGCY	5 cut(s)	7, 206, 300, 333, 370
DpnI	GATC	2 cut(s)	260, 455
DpnII	GATC	2 cut(s)	258, 453
DraI	TTTAAA	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	191
FaeI	CATG	4 cut(s)	125, 243, 271, 307
FaiI	YATR	9 cut(s)	68, 123, 156, 158, 241, 269, 305, 315, 402
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	4 cut(s)	121, 239, 267, 303
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	125, 243, 271, 307
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	4 cut(s)	86, 253, 425, 430
Hpy166II	GTNNAC	3 cut(s)	145, 284, 492
Hpy188I	TCNGA	3 cut(s)	30, 73, 258
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	3 cut(s)	145, 284, 492
HpyAV	CCTTC	2 cut(s)	102, 125
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	186, 239, 284, 351, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 419, 467, 476
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	125, 243, 271, 307
Kzo9I	GATC	2 cut(s)	258, 453
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	207, 216, 315
Lsp1109I	GCAGC	1 cut(s)	448
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	260, 455
MboI	GATC	2 cut(s)	258, 453
MboII	GAAGA	2 cut(s)	13, 48
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	262, 424
MnlI	CCTC	6 cut(s)	64, 106, 174, 399, 424, 444
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	470
MwoI	GCNNNNNNNGC	4 cut(s)	203, 419, 467, 476
NdeII	GATC	2 cut(s)	258, 453
NlaIII	CATG	4 cut(s)	125, 243, 271, 307
NlaIV	GGNNCC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	86, 425
PkrI	GCNGC	1 cut(s)	463
PleI	GAGTC	2 cut(s)	261, 424
PpsI	GAGTC	2 cut(s)	261, 424
Ppu21I	YACGTR	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	462
Sau3AI	GATC	2 cut(s)	258, 453
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	2 cut(s)	262, 424
SduI	GDGCHC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	468
SspI	AATATT	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	86, 425
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	284, 320
TspRI	CASTG	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.