Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Reverse (-)

34961174 .. 34963184

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGTTGAATCAGAGCTTCAGCTTCTGCTTTGCTACTCTTATCTTCTTTGTTTTGTTGGGCCTCCCTGCTTCTTCTTCATCTTCTCCCACTTTCATTTCAGATGGTATCTTTGAATCTCAGGCTTCTATTGGCCGGAACTTACTTCAGGCCAAGAAAGGTTGTCCAGTAAACTTTGAGTTTTTGAACTACACCATCATCACAAGCCAATGCAAAGGACCACGGTACCCTGCCGATCCGTGTTGTGCTTCATTCAAGGAATTGGCATGCCCTTATACAGATGTATTGAACGACTTGACAAACGAATGTGCTTCTATTATGTTCAGCTACATCAACCTTTACGGAAACTACCCTCCTGGCCTTTTTGCCAATGAGTGCCGCGAGGGGAAATTGGGTCTTGAATGCCCTGCATTACCGCCTTCAACTGTGGCTGATGATGTAAACGGGGTTCATACCACCTCCTCTCCATCTCCATTGTTAATGCTCACATCTGGTTTCCTATTGTTGCTGTTCCGGTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.89

Weight (kDa)

4.81

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	57 - 133	5.6e-39	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	379, 416
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	4, 131
AfaI	GTAC	1 cut(s)	227
AgsI	TTSAA	7 cut(s)	10, 116, 187, 256, 289, 401, 423
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	18, 24, 327
AluI	AGCT	3 cut(s)	18, 24, 327
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	27
AoxI	GGCC	4 cut(s)	61, 133, 150, 358
Asp718I	GGTACC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	61, 218
AvaII	GGWCC	1 cut(s)	218
BaeI	ACNNNNGTAYC	2 cut(s)	209, 242
BanI	GGYRCC	1 cut(s)	225
BccI	CCATC	3 cut(s)	98, 203, 475
BciT130I	CCWGG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	61, 218
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bse1I	ACTGG	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	4 cut(s)	63, 135, 152, 360
BshNI	GGYRCC	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	136, 514
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	4 cut(s)	63, 135, 152, 360
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	2 cut(s)	379, 416
BspANI	GGCC	4 cut(s)	63, 135, 152, 360
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	225, 427, 522
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	63, 135, 152, 360
BtgI	CCRYGG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	61, 218
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	267
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	2 cut(s)	4, 131
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	268, 276, 320, 453
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	379
HaeIII	GGCC	4 cut(s)	63, 135, 152, 360
HapII	CCGG	2 cut(s)	136, 514
Hin1II	CATG	1 cut(s)	270
HinfI	GANTC	2 cut(s)	10, 116
HpaII	CCGG	2 cut(s)	136, 514
Hpy166II	GTNNAC	2 cut(s)	172, 442
Hpy188I	TCNGA	2 cut(s)	15, 103
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	172, 442
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	3 cut(s)	225, 427, 522
HpyCH4V	TGCA	2 cut(s)	213, 410
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	270
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	516
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	4 cut(s)	37, 66, 69, 75
MluCI	AATT	2 cut(s)	260, 389
MnlI	CCTC	5 cut(s)	74, 363, 376, 469, 472
MseI	TTAA	1 cut(s)	479
MspI	CCGG	2 cut(s)	136, 514
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	381
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	1 cut(s)	227
NspI	RCATGY	1 cut(s)	270
PaeI	GCATGC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	10, 116
PkrI	GCNGC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	2 cut(s)	61, 218
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PstNI	CAGNNNCTG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	1 cut(s)	379
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	61, 218
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	6 cut(s)	20, 26, 163, 329, 339, 461
SinI	GGWCC	1 cut(s)	218
SphI	GCATGC	1 cut(s)	270
Sse9I	AATT	2 cut(s)	260, 389
SsiI	CCGC	2 cut(s)	379, 416
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	225, 427, 522
TasI	AATT	2 cut(s)	260, 389
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	10, 116
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TspDTI	ATGAA	4 cut(s)	69, 85, 240, 440
TspGWI	ACGGA	2 cut(s)	228, 357
VpaK11BI	GGWCC	1 cut(s)	218
XceI	RCATGY	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.