Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Reverse (-)

80723700 .. 80725810

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGTTGAATCAGAGCTTCAGCTTCTGTTTTGCTGCTCTCTTCTTCTTCTTCATTTTGTTGGGTCTCCCTGCTTCTTCTTCATCTTCTCCCACTTTCATTTCAGATGGTATCTTTGAATCTCAGGTTTCTATTGGCCGGAACCTACTGCAGGCCAAGAAAGGTTGTCCAGTAAACTTTGAGTTTTTGAACTACACCATCATCACAAGCCAATGCAAAGGACCACGATACCCTGCTGAGCAGTGTTGTGCTTCATTCAAGGAATTGGCTTGCCCTTATGCAGATGTATTGAACGACTTGACAAATGAATGTGCTTCTATTATGTTCAGCTACATCAACCTCTATGGAAACTACCCTCCTGGCCTTTTTGCCAACGAGTGCCACGAGGGGAAATTGGGTCTTGCATGCCCTGCATTACCGCCTTCAACTTTGGCTGATGATGTAAACGGGGTTCATACCACCACCTCTCCATCTCCATTGCTAATGCTCACAGCTGGTTTCCTATTGTTGCTTTTCCGGTTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.04

Weight (kDa)

4.97

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	58 - 134	1.3e-39	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	10, 119, 190, 259, 292, 426
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	18, 24, 330, 494
AluI	AGCT	4 cut(s)	18, 24, 330, 494
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	27
AoxI	GGCC	3 cut(s)	136, 153, 361
ApeKI	GCWGC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	101, 206, 478
BciT130I	CCWGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	1 cut(s)	36
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	360
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	137, 228
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	3 cut(s)	138, 155, 363
BsiSI	CCGG	2 cut(s)	139, 517
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	138, 155, 363
Bso31I	GGTCTC	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	3 cut(s)	138, 155, 363
BspCNI	CTCAG	2 cut(s)	136, 229
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	3 cut(s)	153, 271, 406
BstDEI	CTNAG	2 cut(s)	123, 237
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	138, 155, 363
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	153, 271, 406
CaiI	CAGNNNCTG	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	221
CviAII	CATG	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	123, 237
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	358
FaeI	CATG	1 cut(s)	408
FaiI	YATR	6 cut(s)	279, 323, 345, 406, 456, 526
FatI	CATG	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	138, 155, 363
HapII	CCGG	2 cut(s)	139, 517
Hin1II	CATG	1 cut(s)	408
HinfI	GANTC	2 cut(s)	10, 119
HpaII	CCGG	2 cut(s)	139, 517
Hpy166II	GTNNAC	2 cut(s)	175, 445
Hpy188I	TCNGA	2 cut(s)	15, 106
Hpy8I	GTNNAC	2 cut(s)	175, 445
HpyAV	CCTTC	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	151, 216, 281, 404, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	123, 237
Hsp92II	CATG	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	519
MboII	GAAGA	7 cut(s)	34, 37, 40, 43, 69, 72, 78
MluCI	AATT	2 cut(s)	263, 392
MnlI	CCTC	4 cut(s)	350, 366, 379, 475
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	2 cut(s)	139, 517
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	1 cut(s)	143
NspI	RCATGY	1 cut(s)	408
PaeI	GCATGC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	10, 119
PkrI	GCNGC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	27
PvuII	CAGCTG	1 cut(s)	494
SatI	GCNGC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	9 cut(s)	20, 26, 129, 147, 166, 332, 342, 467, 496
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	221
SphI	GCATGC	1 cut(s)	408
Sse9I	AATT	2 cut(s)	263, 392
SsiI	CCGC	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	358
TasI	AATT	2 cut(s)	263, 392
TfiI	GAWTC	2 cut(s)	10, 119
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	6 cut(s)	43, 72, 88, 243, 321, 443
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.