Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Forward (+)

3674558 .. 3676840

Gene Structure 2283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1042800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGTTGAATCAGAGCTTCTGCTTCTGCTTTTCCATTGTTTTCCTTTTCCTTTTTCTGGGTCTTCCTGCTTCTTCTTCCTCACCAACTTTCATTTCAGATGGTGTCTTTGAATCTCAGGCTTCTATTGGCCGGAACTTGCTGCAGGCCAAGAAAGGTTGCCCAGTGAACTTTGAGTTTTTGAACTACACGGTTATCACAAGCCAATGCAAAGGACCCCAATACCCTGCTAAACAGTGTTGTGATGCATTCAAGGAATTGGCTTGCCCTTACGCAGATGTGATTAATGACTTGACAAATGAATGCGCTTCAATTATGTTCAGCTACATCAACCTCTACGGAAACTACCCACCTGGACTTTTCGCCAATGAGTGCCATGACGGAAAAGAAGGTCTGATATGCCCTGCATTACCACCATCTGCAGTGGCCAATGATGTAAATGGGGCTCATACCATACACTATCCGTCTCCATTGCTAATGCTCGCTGCGGGCTTCCTAGTGTTGTTCCGGTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.74

Weight (kDa)

5.17

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	56 - 132	7.5e-41	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	488
AcoI	YGGCCR	2 cut(s)	130, 426
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	5 cut(s)	10, 113, 184, 253, 312
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	2 cut(s)	18, 324
AluI	AGCT	2 cut(s)	18, 324
Alw26I	GTCTC	1 cut(s)	471
AoxI	GGCC	3 cut(s)	130, 147, 426
ApeKI	GCWGC	2 cut(s)	142, 485
AseI	ATTAAT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	129, 472
BccI	CCATC	2 cut(s)	95, 424
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	2 cut(s)	143, 420
BisI	GCNGC	2 cut(s)	143, 486
BlsI	GCNGC	2 cut(s)	144, 487
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	129, 472
BshFI	GGCC	3 cut(s)	132, 149, 428
BsiSI	CCGG	2 cut(s)	133, 508
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmI	GAATGC	2 cut(s)	248, 308
BsnI	GGCC	3 cut(s)	132, 149, 428
Bsp1286I	GDGCHC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	3 cut(s)	132, 149, 428
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	2 cut(s)	147, 424
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	193, 237
BstC8I	GCNNGC	4 cut(s)	147, 265, 483, 490
BstDEI	CTNAG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	308
BstMAI	GTCTC	1 cut(s)	471
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	2 cut(s)	143, 420
BstV1I	GCAGC	2 cut(s)	129, 472
BstV2I	GAAGAC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	132, 149, 428
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	3 cut(s)	171, 242, 429
Cac8I	GCNNGC	4 cut(s)	147, 265, 483, 490
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	130, 426
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	380
FaiI	YATR	6 cut(s)	317, 378, 400, 450, 455, 517
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	143, 486
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	143, 486
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	2 cut(s)	143, 486
HaeIII	GGCC	3 cut(s)	132, 149, 428
HapII	CCGG	2 cut(s)	133, 508
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	2 cut(s)	10, 113
HpaII	CCGG	2 cut(s)	133, 508
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	15, 100, 396
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	193, 237
HpyCH4V	TGCA	5 cut(s)	145, 210, 248, 407, 422
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	1 cut(s)	306
Lsp1109I	GCAGC	2 cut(s)	129, 472
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	497
MaeIII	GTNAC	1 cut(s)	510
MboII	GAAGA	3 cut(s)	56, 66, 69
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	257, 312
MluNI	TGGCCA	1 cut(s)	428
MnlI	CCTC	2 cut(s)	91, 344
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	428
MspI	CCGG	2 cut(s)	133, 508
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	248, 308
MvaI	CCWGG	1 cut(s)	354
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	250
PctI	GAATGC	2 cut(s)	248, 308
PfeI	GAWTC	2 cut(s)	10, 113
PkrI	GCNGC	2 cut(s)	144, 487
PpuMI	RGGWCCY	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	2 cut(s)	147, 424
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	143, 486
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	6 cut(s)	20, 160, 326, 336, 355, 394
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	143, 420
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	257, 312
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	193, 237
TasI	AATT	2 cut(s)	257, 312
TfiI	GAWTC	2 cut(s)	10, 113
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	171, 242, 429
TseI	GCWGC	2 cut(s)	142, 485
TspDTI	ATGAA	2 cut(s)	82, 315
TspGWI	ACGGA	3 cut(s)	354, 396, 453
TspRI	CASTG	3 cut(s)	171, 242, 429
VpaK11BI	GGWCC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	285
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.