Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Reverse (-)

81291552 .. 81293450

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG524900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCATCTGCAGGTTGTCCAGTAAACTTTGAGTTTTTGAACTACACCATCATCACAAGCCAATGCAAAGGACCACGATACCCTGCTGACAAGTGTTGTGCTTCATTCAAGGAATTGGCTTGCCCTTATACAGATGTATTGAACGACTTGACAAATGAATGTGCTTCTATTATGTTCAGCTACATCAACCTCTATGGAAACTACCCTCCTGGCCTTTTTGCCAATGAGTGCCACGAGGGGAAATTGGGTCTTGCATGCCCTGCATTACCGCCTTCAACTTTGGCTGATGATGTAAACGGGGTTCATACCACCTCCTCTCCATCTCCATTGCCAATGCTCACAGCTGGTTTCCTATTGTTGCTGTTCCGGTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.51

Weight (kDa)

4.85

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	8 - 84	2e-39	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AciI	CCGC	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	40, 109, 142, 276
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	180, 344
AluI	AGCT	2 cut(s)	180, 344
AoxI	GGCC	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	233
BccI	CCATC	2 cut(s)	56, 328
BciT130I	CCWGG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	2
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	326
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	304
BshFI	GGCC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	367
BsnI	GGCC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	121, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	121, 256
Cfr13I	GGNCC	1 cut(s)	71
CviAII	CATG	1 cut(s)	255
CviJI	RGCY	6 cut(s)	60, 119, 180, 213, 284, 344
CviKI_1	RGCY	6 cut(s)	60, 119, 180, 213, 284, 344
Eco47I	GGWCC	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	258
FaiI	YATR	5 cut(s)	129, 173, 195, 256, 306
FatI	CATG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	367
Hin1II	CATG	1 cut(s)	258
HpaII	CCGG	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	25, 295
Hpy8I	GTNNAC	2 cut(s)	25, 295
HpyAV	CCTTC	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	11, 66, 254, 263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	258
LpnPI	CCDG	6 cut(s)	33, 96, 195, 222, 273, 330
MaeIII	GTNAC	1 cut(s)	369
MluCI	AATT	2 cut(s)	113, 242
MnlI	CCTC	5 cut(s)	200, 216, 229, 322, 325
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	258
NspI	RCATGY	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	71
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	344
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	5 cut(s)	16, 182, 192, 314, 346
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	71
SphI	GCATGC	1 cut(s)	258
Sse9I	AATT	2 cut(s)	113, 242
SsiI	CCGC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	208
TasI	AATT	2 cut(s)	113, 242
TspDTI	ATGAA	3 cut(s)	93, 171, 293
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.