Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Forward (+)

3318364 .. 3320486

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1042000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGTTTCATCAGAGCTTCTGCTTCTGCTTTTCCATTGTTTTCCTCTTCCTTTTTCTGGGTCTGCCTGCTTCTTCTTCCTCTCCAACTTTCATTTCAGATGGTGTCTTTGAATCTCAGGCTTCTGTCGGCCGGCACTTGCTGCAGGCCAAGAAAGGTTGTCCAGTGAACTTTGAGTTTTTGAACTACACTACTATCACAACCCAATGCAAAGGACCCCGATACCCTGCTAAACAGTGTTGTGATGCATTCAAGGAATTGGCTTGCCCTTATGCAGATGTGCTTAATGACTTGACAAACGAATGCGCTTCAATTATGTTCAGCTACATTAACCTCTACGGAAAGTACCCACCTGGACTTTTTGCCAATGAGTGCCACGAAGGAAAGGAAGGTCTGGAATGCCCTGCCTTACCACCATCTACGGAGGTGGCCAAGGATGTAAATGGGGCTCATACCACAAGCTATCCATCTCCGTTGCTAATGCTAACCGCCGGCATCCTAGCGTTGTTGTTCCGGTTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.09

Weight (kDa)

5.75

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	56 - 132	3.7e-40	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	489
AcoI	YGGCCR	2 cut(s)	130, 429
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	113, 184, 253, 312
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	3 cut(s)	18, 324, 462
AluI	AGCT	3 cut(s)	18, 324, 462
AoxI	GGCC	3 cut(s)	130, 147, 429
ApeKI	GCWGC	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	451
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	3 cut(s)	95, 424, 475
BciT130I	CCWGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	2 cut(s)	235, 504
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	2 cut(s)	132, 491
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	442, 495
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	164
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	132, 149, 431
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	133, 492, 514
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmI	GAATGC	3 cut(s)	248, 308, 404
BsnI	GGCC	3 cut(s)	132, 149, 431
Bsp1286I	GDGCHC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	3 cut(s)	132, 149, 431
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	132, 491
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	2 cut(s)	132, 491
BssECI	CCNNGG	1 cut(s)	432
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstC8I	GCNNGC	5 cut(s)	69, 134, 147, 265, 493
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	442, 495
BstHHI	GCGC	1 cut(s)	308
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	129
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	132, 149, 431
BtsCI	GGATG	2 cut(s)	442, 495
BtsIMutI	CAGTG	2 cut(s)	171, 242
Cac8I	GCNNGC	5 cut(s)	69, 134, 147, 265, 493
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	2 cut(s)	132, 491
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	346
CviJI	RGCY	9 cut(s)	18, 122, 132, 149, 263, 324, 431, 449, 462
CviKI_1	RGCY	9 cut(s)	18, 122, 132, 149, 263, 324, 431, 449, 462
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	117
EaeI	YGGCCR	2 cut(s)	130, 429
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	215
Eco52I	CGGCCG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	432
FaiI	YATR	4 cut(s)	273, 317, 453, 523
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	2 cut(s)	449, 482
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	143
HaeIII	GGCC	3 cut(s)	132, 149, 431
HapII	CCGG	3 cut(s)	133, 492, 514
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	3 cut(s)	133, 492, 514
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	15, 100
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	374, 383
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	4 cut(s)	145, 210, 248, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	117
HspAI	GCGC	1 cut(s)	306
KroI	GCCGGC	2 cut(s)	132, 491
KroNI	GCCGGC	2 cut(s)	134, 493
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	2 cut(s)	235, 504
MaeI	CTAG	1 cut(s)	500
MaeIII	GTNAC	1 cut(s)	516
MboII	GAAGA	3 cut(s)	40, 66, 69
MhlI	GDGCHC	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	2 cut(s)	257, 312
MluNI	TGGCCA	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	4 cut(s)	56, 91, 344, 418
Mox20I	TGGCCA	1 cut(s)	431
Mph1103I	ATGCAT	1 cut(s)	250
MroNI	GCCGGC	2 cut(s)	132, 491
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	2 cut(s)	285, 330
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	3 cut(s)	133, 492, 514
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	3 cut(s)	248, 308, 404
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	142
NaeI	GCCGGC	2 cut(s)	134, 493
NgoMIV	GCCGGC	2 cut(s)	132, 491
NlaIV	GGNNCC	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	250
PctI	GAATGC	3 cut(s)	248, 308, 404
PdiI	GCCGGC	2 cut(s)	134, 493
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	285, 330
SatI	GCNGC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	451
SetI	ASST	8 cut(s)	20, 160, 326, 336, 355, 394, 429, 464
SfaNI	GCATC	2 cut(s)	235, 504
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	257, 312
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	237
TasI	AATT	2 cut(s)	257, 312
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	285, 330
Tru9I	TTAA	2 cut(s)	285, 330
TscAI	CASTG	2 cut(s)	171, 242
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	3 cut(s)	354, 437, 462
TspRI	CASTG	2 cut(s)	171, 242
VpaK11BI	GGWCC	1 cut(s)	215
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.