RLG00000036503

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015836
Physical Location & Seq
Reverse (-)
81352614 .. 81354177
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036503

Sequence Viewer

Length: 525 bp
ATGGGGTTGAATCAGAGCTTCAGCTTCTGCTTTGCTACTCTCTTCTTCTTCATTTTGTTGGGTCTTCCTGCTTCTACTTCATCTTCTCCCACTTTCATTTCAGATGGTATCTTTGAATCTCAGGCTTCTATTGGCCGGAACCTACTGCAGGCCAAGAAAGGTTGTCCAGTAAACTTTGAGTTTTTGAACTACTCCATCATCACAAGCCAATGCAAAGGACCACGATACCCCGCTCAGCAGTGTTGTGCTTCATTCAAGGAATTGGCTTGCCCTTATGCAGATGTATTGAACGACTTGACAAATGAATGTGCTTCTATTATGTTCAGCTACATCAACCTCTATGGAAACTACCCTCCTGGCCTTTTTGCCAATGAGTGCCGTGAGGGGAAATTGGGTCTTGCATGCCCTGCATTACCGCCTTCAACTTTGGCAGATGATGTAAACGGGGTTCATACCACCTCCTCTCCATCTCCATTGCCAATGCTCACAGCTGGTTTCCTATTGTTGCTGTTCCGGTTACTTTGA

Protein Analysis

175

Amino Acids

18.84

Weight (kDa)

5.24

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LLG1 PF26578 57 - 133 3.4e-39 LLG1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26466 AT5G56170
fragaria_vesca FvH4_3g41680 FvH4_3g41680
malus_domestica MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis pycom03g03250 pycom11g03680
rosa_chinensis RchiOBHm_Chr5g0074771
rosa_laevigata RLG00000036503
rosa_samantha Rh5AG491500 Rh5DG524900
rosa_wichuraiana Rw5G045520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 233
AciI CCGC 2 cut(s) 231, 416
AcoI YGGCCR 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 4
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 6 cut(s) 10, 116, 187, 256, 289, 423
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 4 cut(s) 18, 24, 327, 491
AluI AGCT 4 cut(s) 18, 24, 327, 491
AlwNI CAGNNNCTG 1 cut(s) 27
AoxI GGCC 3 cut(s) 133, 150, 358
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 56
BccI CCATC 3 cut(s) 98, 203, 475
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 234
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 473
BseMII CTCAG 2 cut(s) 134, 248
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 1 cut(s) 451
BshFI GGCC 3 cut(s) 135, 152, 360
BsiSI CCGG 2 cut(s) 136, 514
BslI CCNNNNNNNGG 1 cut(s) 148
BsnI GGCC 3 cut(s) 135, 152, 360
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 2 cut(s) 231, 416
BspANI GGCC 3 cut(s) 135, 152, 360
BspCNI CTCAG 2 cut(s) 133, 247
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 1 cut(s) 167
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 150, 268, 403
BstDEI CTNAG 2 cut(s) 120, 234
BstENI CCTNNNNNAGG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 56
BsuRI GGCC 3 cut(s) 135, 152, 360
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 3 cut(s) 150, 268, 403
CaiI CAGNNNCTG 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 1 cut(s) 402
DdeI CTNAG 2 cut(s) 120, 234
EaeI YGGCCR 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 405
FaiI YATR 5 cut(s) 276, 320, 342, 403, 453
FatI CATG 1 cut(s) 401
FauI CCCGC 1 cut(s) 238
HaeIII GGCC 3 cut(s) 135, 152, 360
HapII CCGG 2 cut(s) 136, 514
Hin1II CATG 1 cut(s) 405
HinfI GANTC 2 cut(s) 10, 116
HpaII CCGG 2 cut(s) 136, 514
Hpy166II GTNNAC 2 cut(s) 172, 442
Hpy188I TCNGA 2 cut(s) 15, 103
Hpy8I GTNNAC 2 cut(s) 172, 442
HpyAV CCTTC 1 cut(s) 429
HpyCH4V TGCA 5 cut(s) 148, 213, 278, 401, 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 120, 234
Hsp92II CATG 1 cut(s) 405
LpnPI CCDG 9 cut(s) 81, 107, 134, 149, 180, 342, 369, 420, 477
MaeIII GTNAC 1 cut(s) 516
MbiI CCGCTC 1 cut(s) 233
MboII GAAGA 5 cut(s) 34, 37, 40, 56, 75
MluCI AATT 2 cut(s) 260, 389
MnlI CCTC 5 cut(s) 347, 363, 376, 469, 472
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 2 cut(s) 136, 514
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 407
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 140
NspI RCATGY 1 cut(s) 405
PaeI GCATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 10, 116
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 218
PsrI GAACNNNNNNTAC 2 cut(s) 432, 464
PstI CTGCAG 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 491
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 357
SetI ASST 8 cut(s) 20, 26, 144, 163, 329, 339, 461, 493
SfcI CTRYAG 1 cut(s) 146
SinI GGWCC 1 cut(s) 218
SphI GCATGC 1 cut(s) 405
Sse9I AATT 2 cut(s) 260, 389
SsiI CCGC 2 cut(s) 231, 416
StyD4I CCNGG 1 cut(s) 355
TasI AATT 2 cut(s) 260, 389
TfiI GAWTC 2 cut(s) 10, 116
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 6 cut(s) 40, 69, 85, 240, 318, 440
TspRI CASTG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 146
XceI RCATGY 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.