Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Forward (+)

2573484 .. 2575668

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G033900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTGTTGAATCAAAGCTTTTGCTTCAGCTTTGCAATTATCTTCTTCTTCCTTTTGATGGGTTTTCCTGCGTCTTCTTCTTCTCCTACTTTCATTTCAGATGGTATCTTTGAATCTCAGGCTTCAATCGGCCGGAACCTACTGCAGGCCAAGAAAGGCTGTCCGGTGAACTTTGAGTTTTTGAACTACACTGTTATCACAAGCCGATGCAAAGGACCACAGTACCCTGCTGCCCAGTGTTGTGATGCATTCAAGGAATTGGCTTGTCCTTATACAGATGTGCTGAATGACTTGACAAATGAATGTGCTTCAATTATGTTCAGCTACATTAACCTCTATGGAAACTACCCACCGGGGCTTTTTGCCAATGAGTGCCATGAAGGGAAGGAAGGTCTTCTATGCCCTGCATTACCACCATCAGCGTCGGCTGACGATGTAAATGGTGTTCATACCACATGCAATCGATCTCCATTGCTAATGCTCACAGCTGGTTTCGTAGTATTGTTATTCAGGTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

5.0

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	58, 145
AgsI	TTSAA	6 cut(s)	10, 113, 126, 184, 253, 312
AluBI	AGCT	4 cut(s)	18, 30, 324, 488
AluI	AGCT	4 cut(s)	18, 30, 324, 488
AoxI	GGCC	2 cut(s)	130, 147
ApeKI	GCWGC	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	206, 239
BbsI	GAAGAC	2 cut(s)	66, 386
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	52, 95, 424
BcnI	CCSGG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	2 cut(s)	197, 235
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	66, 386
BpuMI	CCSGG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 145
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	470
BseCI	ATCGAT	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	353
BseLI	CCNNNNNNNGG	2 cut(s)	58, 145
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	235
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	132, 149
BshVI	ATCGAT	1 cut(s)	463
BsiEI	CGRYCG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	133, 164, 353
BslI	CCNNNNNNNGG	2 cut(s)	58, 145
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	132, 149
Bsp143I	GATC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	132, 149
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	193, 222
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	467
BstMBI	GATC	1 cut(s)	464
BstMCI	CGRYCG	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	2 cut(s)	66, 386
BstZI	CGGCCG	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	132, 149
BsuTUI	ATCGAT	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	189, 242
Cac8I	GCNNGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	215
ClaI	ATCGAT	1 cut(s)	463
CseI	GACGC	2 cut(s)	60, 411
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	377, 456
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	130
EagI	CGGCCG	1 cut(s)	130
EclXI	CGGCCG	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	215
Eco52I	CGGCCG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	250
FaeI	CATG	2 cut(s)	380, 459
FaiI	YATR	8 cut(s)	273, 317, 339, 378, 400, 450, 457, 520
FatI	CATG	2 cut(s)	376, 455
Fnu4HI	GCNGC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	132, 149
HapII	CCGG	3 cut(s)	133, 164, 353
HgaI	GACGC	2 cut(s)	60, 411
Hin1II	CATG	2 cut(s)	380, 459
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	10, 113
HpaII	CCGG	3 cut(s)	133, 164, 353
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	374, 379, 383
HpyCH4III	ACNGT	2 cut(s)	193, 222
HpyCH4V	TGCA	6 cut(s)	35, 145, 210, 248, 407, 459
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	380, 459
Kzo9I	GATC	1 cut(s)	464
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	197, 235
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	7 cut(s)	34, 37, 40, 66, 69, 72, 386
MluCI	AATT	3 cut(s)	36, 257, 312
MnlI	CCTC	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	3 cut(s)	133, 164, 353
MspR9I	CCNGG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	2 cut(s)	380, 459
NlaIV	GGNNCC	1 cut(s)	137
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	1 cut(s)	459
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	10, 113
PkrI	GCNGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	215
PsrI	GAACNNNNNNTAC	2 cut(s)	429, 461
PstI	CTGCAG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	464
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	8 cut(s)	20, 32, 141, 326, 336, 394, 490, 515
SfaNI	GCATC	2 cut(s)	197, 235
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	3 cut(s)	36, 257, 312
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	193, 222
TaqI	TCGA	1 cut(s)	463
TasI	AATT	3 cut(s)	36, 257, 312
TfiI	GAWTC	2 cut(s)	10, 113
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	2 cut(s)	196, 242
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	4 cut(s)	82, 315, 393, 437
TspRI	CASTG	2 cut(s)	196, 242
VpaK11BI	GGWCC	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.