Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015836

Physical Location & Seq

Genomic Coordinates Forward (+)

22735899 .. 22737339

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGCTCCTCTCTAGAGCTCTTTTCTTCTTTCTTCTACTCTCAGTTCTTTCTTCTTTCTCTTCTTCAAGTTTCATTTCAGATGGGGTCTTCGAATCTCAGAGTTTGGTTCTTGGCAGAAACTTGCTTCAGACCAAGAAAACATGTCCTGTGAACTTTGAGTTTATGAACTACACGATCATAACCAGCAAATGCAAAGGTCCCAAATACCCACCAAAAGAATGTTGTGGCGCCTTCAAGGACTTTGCGTGTCCTTACACTGACCAGCTCAACGACCTGAGCTCGGATTGTGCAACCACTATGTTCAGTTACATCAATCTCTATGGAAAATACCCGCCTGGACTTTTCGCTAACCAGTGCAAAGAAGGTAAAGAAGGTCTCGAATGCCCTGCCGGATCCCAGTTGCCTCCAGAGACATCAGCAGAGGTAAACGCAGCAACTACCTCGTCGTCCCGTCTTTGGCTGACCGTTTCCGCGGCTCTTTTGGTTTTTGTTAAGTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006935 GO:0008150 GO:0008219 GO:0009566 GO:0009567 GO:0009605 GO:0009856 GO:0009987 GO:0010183 GO:0010198 GO:0010483 GO:0010623 GO:0012501 GO:0016020 GO:0019953 GO:0022414 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040008 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0044425 GO:0044464 GO:0044703 GO:0044706 GO:0045927 GO:0048468 GO:0048518 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050896 GO:0050918 GO:0051703 GO:0051704 GO:0065007 GO:0071944 GO:0090406 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.46

Weight (kDa)

6.26

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LLG1	PF26578	51 - 127	1.6e-41	LLG1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26466 AT5G56170
fragaria_vesca	FvH4_3g41680 FvH4_3g41680
malus_domestica	MD03G1042000.v1.1 MD11G1042800.v1.1
prunus_persica	Prupe.6G033900_v2.0.a1 Prupe.6G033900_v2.0.a1
pyrus_communis	pycom03g03250 pycom11g03680
rosa_chinensis	RchiOBHm_Chr5g0074771
rosa_laevigata	RLG00000036503
rosa_samantha	Rh5AG491500 Rh5DG524900
rosa_wichuraiana	Rw5G045520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccII	CGCG	1 cut(s)	476
AciI	CCGC	3 cut(s)	335, 474, 476
AclWI	GGATC	2 cut(s)	390, 403
AcuI	CTGAAG	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	283, 459
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	69, 238
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	7, 20, 268, 282
AluI	AGCT	4 cut(s)	7, 20, 268, 282
Alw21I	GWGCWC	3 cut(s)	9, 22, 284
Alw26I	GTCTC	2 cut(s)	383, 407
AlwI	GGATC	2 cut(s)	390, 403
ApeKI	GCWGC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	3 cut(s)	9, 22, 284
BbsI	GAAGAC	1 cut(s)	82
Bbv12I	GWGCWC	3 cut(s)	9, 22, 284
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	4 cut(s)	371, 405, 426, 460
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	383, 407
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	234
BisI	GCNGC	2 cut(s)	435, 477
BlsI	GCNGC	2 cut(s)	436, 478
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	3 cut(s)	202, 232, 397
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	82
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 459
Bse1I	ACTGG	2 cut(s)	355, 400
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	283, 459
BseMII	CTCAG	3 cut(s)	57, 113, 269
BseNI	ACTGG	2 cut(s)	355, 400
BseXI	GCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	3 cut(s)	9, 22, 284
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	186, 436
BslI	CCNNNNNNNGG	2 cut(s)	283, 459
BsmAI	GTCTC	2 cut(s)	383, 407
BsmFI	GGGAC	2 cut(s)	186, 436
BsmI	GAATGC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	9, 22, 284
Bsp143I	GATC	2 cut(s)	177, 395
BspACI	CCGC	3 cut(s)	335, 474, 476
BspCNI	CTCAG	3 cut(s)	56, 112, 270
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	3 cut(s)	202, 232, 397
BspPI	GGATC	2 cut(s)	390, 403
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	355, 400
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	177, 395
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	43, 99, 278
BstDSI	CCRYGG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	476
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	180, 398
BstMAI	GTCTC	2 cut(s)	383, 407
BstMBI	GATC	2 cut(s)	177, 395
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BtgI	CCRYGG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	258, 362
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	200
Cfr42I	CCGCGG	1 cut(s)	477
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	6 cut(s)	7, 20, 268, 282, 463, 479
CviKI_1	RGCY	6 cut(s)	7, 20, 268, 282, 463, 479
DdeI	CTNAG	3 cut(s)	43, 99, 278
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	2 cut(s)	179, 397
DpnII	GATC	2 cut(s)	177, 395
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	3 cut(s)	7, 20, 282
Eco24I	GRGCYC	3 cut(s)	9, 22, 284
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	200
Eco53kI	GAGCTC	3 cut(s)	7, 20, 282
Eco57I	CTGAAG	1 cut(s)	113
EcoICRI	GAGCTC	3 cut(s)	7, 20, 282
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	3 cut(s)	9, 22, 284
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	1 cut(s)	147
FaiI	YATR	5 cut(s)	145, 167, 182, 302, 324
FaqI	GGGAC	2 cut(s)	186, 436
FatI	CATG	1 cut(s)	143
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	435, 477
FriOI	GRGCYC	3 cut(s)	9, 22, 284
Fsp4HI	GCNGC	2 cut(s)	435, 477
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	2 cut(s)	435, 477
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	234
HapII	CCGG	1 cut(s)	393
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	393
Hpy166II	GTNNAC	2 cut(s)	154, 430
Hpy188I	TCNGA	5 cut(s)	82, 102, 132, 286, 506
Hpy188III	TCNNGA	3 cut(s)	15, 380, 410
Hpy8I	GTNNAC	2 cut(s)	154, 430
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	244, 359, 368
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4V	TGCA	3 cut(s)	195, 293, 360
HpyF3I	CTNAG	3 cut(s)	43, 99, 278
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
KspI	CCGCGG	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	177, 395
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	2 cut(s)	179, 397
MboI	GATC	2 cut(s)	177, 395
MboII	GAAGA	6 cut(s)	19, 26, 45, 54, 57, 82
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	9, 22, 284
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	4 cut(s)	20, 417, 418, 454
MseI	TTAA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	476
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	2 cut(s)	177, 395
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	3 cut(s)	202, 232, 397
NspI	RCATGY	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	93
PciI	ACATGT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	436, 478
PluTI	GGCGCC	1 cut(s)	234
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	143
Psp124BI	GAGCTC	3 cut(s)	9, 22, 284
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	202, 232, 397
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	395
SacI	GAGCTC	3 cut(s)	9, 22, 284
SacII	CCGCGG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	2 cut(s)	435, 477
Sau3AI	GATC	2 cut(s)	177, 395
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	3 cut(s)	9, 22, 284
SfoI	GGCGCC	1 cut(s)	232
Sfr303I	CCGCGG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	200
SsiI	CCGC	3 cut(s)	335, 474, 476
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	3 cut(s)	9, 22, 284
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	469
TaqI	TCGA	2 cut(s)	93, 381
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	265, 362
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	64, 182
TspRI	CASTG	2 cut(s)	265, 362
VpaK11BI	GGWCC	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.