AT4G26490

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015040
Physical Location & Seq
Forward (+)
13380409 .. 13381440
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26490.1

Sequence Viewer

Length: 807 bp
ATGCCAAATCTACCTCATCTTCCTCCTCCACCGCAGTTGCAACCGCCCGAAACGCCATCATGGGAAACACCATCGTCTGTATGGTATACTCCAAGAACCACACCATGGAGAACACCACAGAGCACACAATCCACACCAGTTGGCCAAATGGTCTTAACAAAGCCAGCAACGGTTAGATTCAACGGTCTTGATGCAGAGCCGAGGAAAGATAGGGTGATTCTCCGTCAGCCAAGGAGTAGCAGGACCAGTCTCTGGATATGGTGTGTTGCCGGTTTCTGTTTTGTGTTCAGCCTTTTGCTTATCTTTTTTGCGATTGCCACTTTGATAGTGTTTCTTGCGATTAGACCAAGAATACCTGTTTTCGACATCCCAAACGCAAACCTACACACGATCTACTTCGACACGCCGGAGTTTTTCAACGGCGATTTGTCCATGCTGGTGAATTTCACTAACCCTAATAAGAAGATAGAAGTGAAGTTTGAGAAGCTTCGGATTGAGCTCTTCTTCTTCAATAGATTGATTGCAGCGCAAGTGGTCCAGCCATTCTTGCAGAAAAAGCATGAGACGAGGTTGGAACCAATCCGTTTGATCTCTAGTTTGGTAGGCTTGCCTGTAAACCACGCGGTGGAACTCAGGAGACAGCTGGAAAACAACAAGATAGAATATGAGATTAGAGGTACCTTCAAAGTCAAAGCTCATTTTGGAATGATTCATTACTCTTATCAGCTGCACGGGAGGTGCCAACTTCAGATGACCGGTCCACCAACCGGAATCCTGATTTCTCGTAATTGCACGACGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

268

Amino Acids

30.95

Weight (kDa)

10.02

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 147 - 238 2.7e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 677
AccB1I GGYRCC 2 cut(s) 677, 738
AccB7I CCANNNNNTGG 3 cut(s) 105, 252, 625
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 623
AciI CCGC 3 cut(s) 32, 44, 623
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 731
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 4 cut(s) 105, 252, 625, 767
AgeI ACCGGT 1 cut(s) 755
AgsI TTSAA 4 cut(s) 181, 418, 511, 685
AluBI AGCT 5 cut(s) 487, 499, 643, 695, 727
AluI AGCT 5 cut(s) 487, 499, 643, 695, 727
Alw21I GWGCWC 2 cut(s) 125, 501
Alw26I GTCTC 3 cut(s) 254, 557, 631
AlwNI CAGNNNCTG 1 cut(s) 252
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 524, 727
ApoI RAATTY 1 cut(s) 442
AsiGI ACCGGT 1 cut(s) 755
Asp718I GGTACC 1 cut(s) 677
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 3 cut(s) 243, 535, 758
AsuHPI GGTGA 2 cut(s) 226, 451
AvaII GGWCC 3 cut(s) 243, 535, 758
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 2 cut(s) 677, 738
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 2 cut(s) 125, 501
BbvI GCAGC 2 cut(s) 536, 714
BccI CCATC 2 cut(s) 64, 79
BceAI ACGGC 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 254, 557, 631
BfaI CTAG 1 cut(s) 594
BisI GCNGC 2 cut(s) 525, 728
BlsI GCNGC 2 cut(s) 526, 729
Bme18I GGWCC 3 cut(s) 243, 535, 758
BmgT120I GGNCC 3 cut(s) 243, 535, 758
BmiI GGNNCC 3 cut(s) 576, 679, 740
BmsI GCATC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 104, 200, 230
BsaWI WCCGGW 2 cut(s) 755, 767
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 252, 625, 767
Bse118I RCCGGY 2 cut(s) 269, 755
Bse1I ACTGG 2 cut(s) 137, 246
BseDI CCNNGG 3 cut(s) 104, 200, 230
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 4 cut(s) 105, 252, 625, 767
BseMII CTCAG 1 cut(s) 646
BseNI ACTGG 2 cut(s) 137, 246
BseRI GAGGAG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 536, 714
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 677, 738
BshTI ACCGGT 1 cut(s) 755
BsiHKAI GWGCWC 2 cut(s) 125, 501
BsiSI CCGG 4 cut(s) 270, 407, 756, 768
BslI CCNNNNNNNGG 4 cut(s) 105, 252, 625, 767
BsmAI GTCTC 3 cut(s) 254, 557, 631
BsmBI CGTCTC 1 cut(s) 557
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 125, 501
Bsp143I GATC 2 cut(s) 390, 588
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 3 cut(s) 32, 44, 623
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 645
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 3 cut(s) 576, 679, 740
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 2 cut(s) 677, 738
BsrFI RCCGGY 2 cut(s) 269, 755
BsrI ACTGG 2 cut(s) 137, 246
BssAI RCCGGY 2 cut(s) 269, 755
BssECI CCNNGG 3 cut(s) 104, 200, 230
BssMI GATC 2 cut(s) 390, 588
BssNAI GTATAC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 104, 230
Bst1107I GTATAC 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 172, 185
Bst6I CTCTTC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 165, 608
BstDEI CTNAG 1 cut(s) 632
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 2 cut(s) 393, 591
BstMAI GTCTC 3 cut(s) 254, 557, 631
BstMBI GATC 2 cut(s) 390, 588
BstMWI GCNNNNNNNGC 3 cut(s) 52, 547, 556
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 536, 714
BstZ17I GTATAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 104
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 165, 608
CaiI CAGNNNCTG 1 cut(s) 252
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 2 cut(s) 269, 755
Cfr13I GGNCC 3 cut(s) 243, 535, 758
Csp6I GTAC 1 cut(s) 678
CspAI ACCGGT 1 cut(s) 755
CspCI CAANNNNNGTGG 4 cut(s) 18, 53, 121, 156
CviAII CATG 4 cut(s) 60, 105, 433, 560
CviQI GTAC 1 cut(s) 678
DdeI CTNAG 1 cut(s) 632
DpnI GATC 2 cut(s) 392, 590
DpnII GATC 2 cut(s) 390, 588
DraIII CACNNNGTG 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Ecl136II GAGCTC 1 cut(s) 499
Eco130I CCWWGG 2 cut(s) 104, 230
Eco24I GRGCYC 1 cut(s) 501
Eco47I GGWCC 3 cut(s) 243, 535, 758
Eco53kI GAGCTC 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 731
EcoICRI GAGCTC 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 104, 230
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 2 cut(s) 104, 230
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 4 cut(s) 63, 108, 436, 563
FaiI YATR 8 cut(s) 61, 82, 87, 106, 259, 434, 561, 666
FatI CATG 4 cut(s) 59, 104, 432, 559
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 525, 728
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 2 cut(s) 525, 728
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 528
GluI GCNGC 2 cut(s) 525, 728
HaeIII GGCC 1 cut(s) 144
HapII CCGG 4 cut(s) 270, 407, 756, 768
HhaI GCGC 1 cut(s) 529
Hin1II CATG 4 cut(s) 63, 108, 436, 563
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 4 cut(s) 177, 217, 709, 771
HpaII CCGG 4 cut(s) 270, 407, 756, 768
HphI GGTGA 2 cut(s) 226, 451
Hpy166II GTNNAC 3 cut(s) 87, 616, 761
Hpy188I TCNGA 2 cut(s) 492, 750
Hpy188III TCNNGA 4 cut(s) 188, 253, 634, 775
Hpy8I GTNNAC 3 cut(s) 87, 616, 761
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 2 cut(s) 172, 185
HpyCH4V TGCA 6 cut(s) 40, 194, 524, 550, 730, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 547, 556
HpyF3I CTNAG 1 cut(s) 632
Hsp92II CATG 4 cut(s) 63, 108, 436, 563
HspAI GCGC 1 cut(s) 527
KpnI GGTACC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 390, 588
LguI GCTCTTC 1 cut(s) 506
Lsp1109I GCAGC 2 cut(s) 536, 714
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 594
MalI GATC 2 cut(s) 392, 590
MboI GATC 2 cut(s) 390, 588
MboII GAAGA 5 cut(s) 11, 475, 493, 496, 499
MhlI GDGCHC 2 cut(s) 125, 501
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 2 cut(s) 442, 787
MluNI TGGCCA 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 552
MnlI CCTC 7 cut(s) 24, 33, 36, 195, 561, 668, 729
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 643, 727
MspI CCGG 4 cut(s) 270, 407, 756, 768
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 52, 547, 556
NcoI CCATGG 1 cut(s) 104
NdeII GATC 2 cut(s) 390, 588
NlaIII CATG 4 cut(s) 63, 108, 436, 563
NlaIV GGNNCC 3 cut(s) 576, 679, 740
NmeAIII GCCGAG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 506
PfeI GAWTC 4 cut(s) 177, 217, 709, 771
PflMI CCANNNNNTGG 3 cut(s) 105, 252, 625
PinAI ACCGGT 1 cut(s) 755
PkrI GCNGC 2 cut(s) 526, 729
Psp124BI GAGCTC 1 cut(s) 501
PspN4I GGNNCC 3 cut(s) 576, 679, 740
PspPI GGNCC 3 cut(s) 243, 535, 758
PstNI CAGNNNCTG 1 cut(s) 252
PvuII CAGCTG 2 cut(s) 643, 727
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 506
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 2 cut(s) 525, 728
Sau3AI GATC 2 cut(s) 390, 588
Sau96I GGNCC 3 cut(s) 243, 535, 758
SduI GDGCHC 2 cut(s) 125, 501
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 3 cut(s) 243, 535, 758
SmiMI CAYNNNNRTG 1 cut(s) 437
Sse9I AATT 2 cut(s) 442, 787
SsiI CCGC 3 cut(s) 32, 44, 623
SspMI CTAG 1 cut(s) 594
SstI GAGCTC 1 cut(s) 501
StyI CCWWGG 2 cut(s) 104, 230
TaaI ACNGT 2 cut(s) 172, 185
TaqI TCGA 2 cut(s) 363, 399
TasI AATT 2 cut(s) 442, 787
TfiI GAWTC 4 cut(s) 177, 217, 709, 771
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseI GCWGC 2 cut(s) 524, 727
TspDTI ATGAA 1 cut(s) 701
TspGWI ACGGA 2 cut(s) 212, 572
Van91I CCANNNNNTGG 3 cut(s) 105, 252, 625
VpaK11BI GGWCC 3 cut(s) 243, 535, 758
XapI RAATTY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.