MD03G1038000.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015040
Physical Location & Seq
Reverse (-)
2991314 .. 2992108
795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1038000.v1.1.491

Sequence Viewer

Length: 795 bp
ATGTTAGCCCTCCCACCTCCACCGCCGTCTCCAATTCCACCTTCGCCGCTACCTCAACCCCCGCCCCAACGGCATACCAGACGCCCGCCCCGGTCCCCAAGGCCAAGTACACCAATCTCCCAAATCATCATATCAAAGTTCGCTGCGAATCGAGGAGCCCCAGCACCTGATGAAGTAAATCTAGTCTCAAGTAAACCGACAAAGCAAACAAGACTGCGGCAACCTCAGCGGACAAATCCGCTCATATGGTGCTGTGCTATTGCGTGTCTCATATTTAGCCTTATTCTTATTTTCTTTGGAATTGCAACTTTGATACTCTTCCTAGTTGTCAAACCGAAAACCCCATCATTTGACATCCCCAATGCAAGCCTCAACACCATCTACTTCGACTCACCGGAATACTTCAACGGCGACTTCACTTTCCTCGCAAATTTCTCCAACCCTAATCGGAAAATCGATATAAGATTTGAGTATCTGGATATGGAGCTTTACTTTTCTGACAGGCTCATAGCAACTCAATCTCTTGCACCTTTCACACAGAGACCTGGAGAAGGAAGGTTGGGATCAGTTCGCTTAATATCGAGCTTGGTTTACCTGCCTGTCAATCACGCTGTGGCACTTCGGACACAGGTGCAGAACAATCGGGTCACCTATAATATGAGAGGAACATTTAAAGTGAGAGCCAGTCTAGGTATGATCCATTTTTCTTACTGGTTGCACAGCAGATGCCAGTTACAGATGACAGGTCCGCCAACTGGTGTTTTAGTTGCAAGAAGTTGCAAATCTAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

265

Amino Acids

29.7

Weight (kDa)

10.54

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 146 - 242 1.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26490 AT5G56050
fragaria_vesca FvH4_3g42130
malus_domestica MD03G1038000.v1.1 MD11G1039100.v1.1
prunus_persica Prupe.6G029700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0075341
rosa_laevigata RLG00000036551
rosa_multiflora Rmu_sc0000770.1_g000034
rosa_roxburghii Rroxscaffold_1G00006190
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495400 Rh5BG517100 Rh5CG540700 Rh5DG532400
rosa_wichuraiana Rw5G045970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 603
AccBSI CCGCTC 1 cut(s) 241
AciI CCGC 8 cut(s) 23, 47, 62, 86, 217, 229, 239, 749
AclWI GGATC 2 cut(s) 571, 691
AcsI RAATTY 1 cut(s) 430
AcyI GRCGYC 1 cut(s) 82
AdeI CACNNNGTG 1 cut(s) 613
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 551, 755
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 1 cut(s) 544
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 2 cut(s) 487, 585
AluI AGCT 2 cut(s) 487, 585
Alw26I GTCTC 4 cut(s) 33, 190, 272, 535
AlwI GGATC 2 cut(s) 571, 691
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 93, 746
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 384, 640
AvaII GGWCC 2 cut(s) 93, 746
BanII GRGCYC 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 352, 386
BceAI ACGGC 3 cut(s) 10, 86, 424
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 546
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 4 cut(s) 33, 190, 272, 535
BfaI CTAG 3 cut(s) 182, 323, 689
BfuAI ACCTGC 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 70
BisI GCNGC 3 cut(s) 47, 144, 218
BlsI GCNGC 3 cut(s) 48, 145, 219
Bme1390I CCNGG 2 cut(s) 91, 546
Bme18I GGWCC 2 cut(s) 93, 746
BmgT120I GGNCC 2 cut(s) 93, 746
BmiI GGNNCC 2 cut(s) 95, 157
BmrFI CCNGG 2 cut(s) 91, 546
BmsI GCATC 1 cut(s) 716
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 89, 98
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 755
Bse1I ACTGG 4 cut(s) 684, 716, 730, 760
BseBI CCWGG 1 cut(s) 546
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 89, 98
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 2 cut(s) 551, 755
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 4 cut(s) 684, 716, 730, 760
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 653
BshFI GGCC 1 cut(s) 103
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 2 cut(s) 91, 395
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 551, 755
BsmAI GTCTC 4 cut(s) 33, 190, 272, 535
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 563, 696
BspACI CCGC 8 cut(s) 23, 47, 62, 86, 217, 229, 239, 749
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 95, 157
BspMI ACCTGC 1 cut(s) 603
BspPI GGATC 2 cut(s) 571, 691
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 241
BsrI ACTGG 4 cut(s) 684, 716, 730, 760
BssECI CCNNGG 2 cut(s) 89, 98
BssMI GATC 2 cut(s) 563, 696
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 86, 367
BstDEI CTNAG 1 cut(s) 225
BstEII GGTNACC 1 cut(s) 646
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 2 cut(s) 566, 699
BstMAI GTCTC 4 cut(s) 33, 190, 272, 535
BstMBI GATC 2 cut(s) 563, 696
BstMWI GCNNNNNNNGC 2 cut(s) 70, 226
BstNI CCWGG 1 cut(s) 546
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 2 cut(s) 89, 544
BstV1I GCAGC 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 456
BsuRI GGCC 1 cut(s) 103
BsuTUI ATCGAT 1 cut(s) 456
BtsCI GGATG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 603
Cac8I GCNNGC 2 cut(s) 86, 367
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 93, 746
ClaI ATCGAT 1 cut(s) 456
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 9 cut(s) 8, 103, 158, 279, 369, 487, 505, 585, 683
CviKI_1 RGCY 9 cut(s) 8, 103, 158, 279, 369, 487, 505, 585, 683
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 565, 698
DpnII GATC 2 cut(s) 563, 696
DraI TTTAAA 1 cut(s) 673
DraIII CACNNNGTG 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 2 cut(s) 93, 746
Eco91I GGTNACC 1 cut(s) 646
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoO65I GGTNACC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 33
FaqI GGGAC 1 cut(s) 79
FauI CCCGC 2 cut(s) 69, 93
FauNDI CATATG 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 47, 144, 218
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 3 cut(s) 47, 144, 218
FspBI CTAG 3 cut(s) 182, 323, 689
GluI GCNGC 3 cut(s) 47, 144, 218
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 1 cut(s) 103
HapII CCGG 2 cut(s) 91, 395
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
HinfI GANTC 2 cut(s) 148, 389
HpaII CCGG 2 cut(s) 91, 395
HphI GGTGA 2 cut(s) 384, 640
Hpy166II GTNNAC 3 cut(s) 110, 194, 592
Hpy188I TCNGA 3 cut(s) 450, 499, 624
Hpy188III TCNNGA 1 cut(s) 476
Hpy8I GTNNAC 3 cut(s) 110, 194, 592
HpyAV CCTTC 3 cut(s) 51, 545, 549
HpyCH4V TGCA 7 cut(s) 305, 365, 527, 634, 718, 770, 780
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 226
HpyF3I CTNAG 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 82
Kzo9I GATC 2 cut(s) 563, 696
LmnI GCTCC 2 cut(s) 155, 484
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 716
MaeI CTAG 3 cut(s) 182, 323, 689
MaeIII GTNAC 2 cut(s) 646, 732
MalI GATC 2 cut(s) 565, 698
MbiI CCGCTC 1 cut(s) 241
MboI GATC 2 cut(s) 563, 696
MboII GAAGA 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 33, 300, 430
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 8 cut(s) 20, 27, 63, 146, 234, 380, 434, 656
MseI TTAA 2 cut(s) 575, 672
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 2 cut(s) 91, 395
MspR9I CCNGG 2 cut(s) 91, 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 2 cut(s) 70, 226
NciI CCSGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 245
NdeII GATC 2 cut(s) 563, 696
NlaIV GGNNCC 2 cut(s) 95, 157
NmuCI GTSAC 1 cut(s) 646
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 48, 145, 219
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 544
PspEI GGTNACC 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 95, 157
PspPI GGNCC 2 cut(s) 93, 746
PstNI CAGNNNCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 575, 672
SatI GCNGC 3 cut(s) 47, 144, 218
Sau3AI GATC 2 cut(s) 563, 696
Sau96I GGNCC 2 cut(s) 93, 746
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 2 cut(s) 91, 546
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 1 cut(s) 716
SinI GGWCC 2 cut(s) 93, 746
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 3 cut(s) 33, 300, 430
SsiI CCGC 8 cut(s) 23, 47, 62, 86, 217, 229, 239, 749
SspMI CTAG 3 cut(s) 182, 323, 689
StyD4I CCNGG 2 cut(s) 89, 544
StyI CCWWGG 1 cut(s) 98
TaqI TCGA 4 cut(s) 151, 387, 456, 581
TasI AATT 3 cut(s) 33, 300, 430
TatI WGTACW 1 cut(s) 107
TauI GCSGC 2 cut(s) 49, 220
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 575, 672
Tru9I TTAA 2 cut(s) 575, 672
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 93, 746
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 430
XspI CTAG 3 cut(s) 182, 323, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.